BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G79075.1

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932745 jgi|Araly1|932745|scaffold_400733.1                        182    2e-45


> Ahg932745 jgi|Araly1|932745|scaffold_400733.1
Length=197

 Score =  182 bits (98),  Expect = 2e-45
 Identities = 130/144 (90%), Gaps = 7/144 (5%)
 Strand=Plus/Minus

Query  86   AGTGGAAGAAGAAGCGTATGAGGAGGCTTAAGAGGAAGAGACGAAAGATGAGACAGCGTT  145
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  155  AGTGGAAGAAGAAGCGTATGAGGAGGCTTAAGAGGAAGAGACGAAAGATGAGACAGCGAT  96

Query  146  CTAAGTAAATTTGCCTTT-GAAGACAAT--G-CGACTCTGTTTCTTGCTTCTCTCCCTT-  200
            | |||||| |||| |||| |||| ||||  | ||||| |||||||||||||||||| || 
Sbjct  95   CCAAGTAA-TTTGGCTTTTGAAGTCAATTCGACGACTGTGTTTCTTGCTTCTCTCC-TTC  38

Query  201  TCTCTCTTGCAAACATTGTTCTTA  224
            | |||||||||||||||| |||||
Sbjct  37   TATCTCTTGCAAACATTGATCTTA  14



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10149386674


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5