BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79075.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value Ahg932745 jgi|Araly1|932745|scaffold_400733.1 182 2e-45 > Ahg932745 jgi|Araly1|932745|scaffold_400733.1 Length=197 Score = 182 bits (98), Expect = 2e-45 Identities = 130/144 (90%), Gaps = 7/144 (5%) Strand=Plus/Minus Query 86 AGTGGAAGAAGAAGCGTATGAGGAGGCTTAAGAGGAAGAGACGAAAGATGAGACAGCGTT 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 155 AGTGGAAGAAGAAGCGTATGAGGAGGCTTAAGAGGAAGAGACGAAAGATGAGACAGCGAT 96 Query 146 CTAAGTAAATTTGCCTTT-GAAGACAAT--G-CGACTCTGTTTCTTGCTTCTCTCCCTT- 200 | |||||| |||| |||| |||| |||| | ||||| |||||||||||||||||| || Sbjct 95 CCAAGTAA-TTTGGCTTTTGAAGTCAATTCGACGACTGTGTTTCTTGCTTCTCTCC-TTC 38 Query 201 TCTCTCTTGCAAACATTGTTCTTA 224 | |||||||||||||||| ||||| Sbjct 37 TATCTCTTGCAAACATTGATCTTA 14 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10149386674 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5