BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G79090.1

Length=3000
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg909539 jgi|Araly1|909539|Al_scaffold_0002_2620                   3764    0.0  
  Ahg920567 jgi|Araly1|920567|scaffold_101848.1                       1242    0.0  


> Ahg909539 jgi|Araly1|909539|Al_scaffold_0002_2620
Length=2367

 Score = 3764 bits (2038),  Expect = 0.0
 Identities = 2251/2353 (96%), Gaps = 18/2353 (1%)
 Strand=Plus/Plus

Query  323   TCCCGTAACTCAGGATCTTAAGAAATTTGGAGATAATTCTACAGGTAACACAATGTTTGA  382
             |||||| ||| ||||||||||||| |||||||||||| || ||||| | |||||||||||
Sbjct  24    TCCCGTGACTGAGGATCTTAAGAATTTTGGAGATAATCCTTCAGGTGATACAATGTTTGA  83

Query  383   TGCATCTCAATATGCCTTTTTTGGGAACGATGTTGTCGAGGAGGTTGAGCTGGGTGGATT  442
             ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  84    TGCATCTCAGTATGCCTTTTTTGGGAACGATGTTGTCGAGGAGGTTGAGCTTGGTGGATT  143

Query  443   GGAAGAAGAAGATGAGATTTTGTCTTTCACTGGAATAGCAGAAGACTTTTCATTTGATAA  502
             ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  144   GGATGAGGAAGATGAGATTTTGTCTTTCACTGGAATAGCAGAAGACTTTTCATTTGATAA  203

Query  503   GGAAGAGGTTGGAGATTCTAGACTTCTGTCTGACGTTGATGATCTTGCTAGTACTTTTTC  562
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  204   GGAAGAGGTTGAAGATTCTAGACTTCTGTCTGACGTTGATGATCTTGCTAGTACTTTTTC  263

Query  563   AAAGTTGAATAGGGAACCTGATGTGTATAGTAA-TACGGGGCCAATCACTGATAGGCGAT  621
             |||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||
Sbjct  264   AAAGTTGAATAGGGAACCTGATGTATATAG-AAGTACAGGGCCAATCACTGATAGGCGAT  322

Query  622   CAAGT-CAGAATTCTTTAGCTGCTGAGTGGACCCATGGGGAAGAGTTACCAAATTGGTAC  680
             ||| | ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  323   CAA-TACAGAATTCTCTAGCTGCTGAGTGGACCCATGGGGAGGAGTTGCCAAATTGGTAC  381

Query  681   GGCCGGCAAATACTGGACTCTGATGCCATTAAAGATGACAAGGTGTGGTCAGCACAGCCA  740
             ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct  382   GGCCGGCCAATACTGGACTCTGATGCCATTAAAGATGACAAGGCGTGGTCAGCACAGCCT  441

Query  741   TTTTCATCTCTGGACCGTGTTGAGCAGAGAATCCCTGACAGAACAAAATTGTATCCAGAA  800
             |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct  442   TTTTCATCTCTGGACCTTGTTCAGCAGAGAAACCCTGACAGAACAAAATTGTATCCAGAA  501

Query  801   CCACAACGTCAACTGCATCAAGACCATAATCAACAACAGTTTTCCAGCGAACCAATTCTT  860
             |||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  502   CCACAGGGTCAACCGCATCAAGACCATAATCAACAACAGTTTTCCAGCGAACCAATTCTT  561

Query  861   GTCCCGAAGTCATCTTTTGTTTCATACCCTCCTCCAGGCAGCATATCACCAGATCAGCGT  920
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  562   GTCCCGAAGTCATCTTTTGTTTCATACCCTCCTCCAGGCAGCATATCACCAGATCAGCGT  621

Query  921   TTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGGATCGCCAAACTTT  980
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  622   TTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGGATCGCCAAACTTC  681

Query  981   TCTCCTTTTCCAAATTTGCAGCCTCAGTTGCCTAGCATGCATCATGGATCACCGCAGCAT  1040
             ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  682   TCTCCTTTTCCAACTTTGCAGCCTCAGTTGCCTACCATGCATCATGGATCACCGCAGCAT  741

Query  1041  ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAATCTCCCTCCAGCTCAA  1100
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  742   ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAATCGCCCTCCAGCTCAA  801

Query  1101  TGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCCGGGATCATGAATAATGCGATG  1160
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  802   TGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCTGGGATCATGAATAATGCGATG  861

Query  1161  CTACAACAGCCTCCTCATCAAAACGGTTTGATGCCTCCACAGATGCAGGGCTCTCAGAAT  1220
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  862   CTACAACAGCCACCTCATCAAAACGGTTTGATGCCTCCACAGATGCAGGGCTCTCAGAAT  921

Query  1221  AGGTTACCACATCCGATGCAGCCTCCTCTCGGGCATATGCCAGGAATGCAGCCTCAGTTA  1280
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  922   AGGTTACCACATCCGATGCAGCCTTCTCTCGGGCATATGCCAGGAATGCAGCCTCAGTTA  981

Query  1281  TTTAATTCCCATCTTTCTCGATCATCATCCTCTGGAAATTATGATGGAATGCTTGGGTTT  1340
             |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  982   TTTAATTCCCATCTTTCTCGATCATCTTCATCTGGAAATTATGATGGAATGCTTGGGTTT  1041

Query  1341  GGTGATCTGAGGGAAGTAAGACCAGGATCAGGTCATGGGAACAGACAGAATGTGCGTTTT  1400
             |||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||
Sbjct  1042  GGTGATCTGAGGGAAGCAAGACCAGGATCAGGTCATGGGAACAGACAGAACATGCGTTTT  1101

Query  1401  CCCCAACAAGGCTTTGATGCTGGCGTTCAGAGAAGATATCCATTCCGGTCTAAATATATG  1460
             |  ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct  1102  CATCAACAAGGCTTTGATACTGGCATTCAGAGAAGATATCCATTCCGGTCTAAATATATG  1161

Query  1461  TCAGCTGGTGAGATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGAT  1520
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1162  TCAGCTGGTGAGATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGAT  1221

Query  1521  CCTTATGTTGATGATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAA  1580
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1222  CCTTACGTTGATGATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAA  1281

Query  1581  CTGAAGCATCATTTCTGTCCAAATCATTTGAGGGACCTTCAACAGCGTGCACGGTCGAAC  1640
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct  1282  CTGAAGCATCATTTCTGTCCAAATCATTTGAGGGACCTCCAACAGCGTGCACGGACAAAC  1341

Query  1641  AACGAGCCCCATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATC  1700
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1342  AACGAGCCCCATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATT  1401

Query  1701  CGCAGGCCTCGTCCTCTGCTTGAAGTGGACCCTCCAAATTCAGCTAAATTTGGTAATGCA  1760
             ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1402  CGCAGGCCTCGTCCTCTTCTTGAAGTGGACCCTCCAAATTCAGCTAAATCTGGTAATGCA  1461

Query  1761  GAGCATAAACCTACGGATAAGCCCCTTGATCAAGAGCCGATGCTTGCAGCTAGAGTGTAC  1820
             |||||||  ||   | ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  1462  GAGCATA--CC---G-ATAAGCCCCTTGATCAAGAACCGATGCTTGCAGCTAGAGTATAC  1515

Query  1821  ATTGAGGATGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTT  1880
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1516  ATTGAGGATGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTC  1575

Query  1881  AACCAACTCCAGGACGGAGGACACCAGTTGAAACAAAGACGACAAG-CATTGTTGCAGAG  1939
             ||||||||||||||||||||| ||||||||||| |||||||||| | |||||||||||| 
Sbjct  1576  AACCAACTCCAGGACGGAGGAAACCAGTTGAAAAAAAGACGACA-GTCATTGTTGCAGAA  1634

Query  1940  CCTTGCGGTTTCACTTCAGCTCGGTGATCCCCTCGCCAAGAATGGGCAAAGCCAGTCTCT  1999
             |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  1635  CCTTGCGGCTTCACTTCAGCTCGGTGATCCCCTCGCCAAGAATGGGCAAAGCCGGTCTCA  1694

Query  2000  TGATGATTTTCTCTTTCTAAGGGTTATCTCTCTTCCAAAGGGTCGAAAGCTACTTATAAG  2059
             |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct  1695  TGATGATTTTCTCTTTCTAAGGATAATCTCTCTTCCAAAGGGTCGGAAGCTACTTATAAG  1754

Query  2060  GTATCTTCAGCTAATTTTCCCTGGCAGCGACCTAATGCGGATAGTTTGCATGGCCATTTT  2119
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1755  GTATCTTCAGCTAATTTTCCCTGGCAGCGACCTAATGCGGATAGTTTGTATGGCCATTTT  1814

Query  2120  CCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAACCAC  2179
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1815  CCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAACCAC  1874

Query  2180  AAATAAGCTTGCAACAGTTATCAACTTGTGCATTCAAAACATGGAGTTAGGACCGGTAAG  2239
             | |||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||
Sbjct  1875  ATATAAACTTGCAAAAGTTATCAACGTGTGCATTCAAAACATGGAGTTGGGACCGGTAAG  1934

Query  2240  CACGTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCCTTAGGCAG  2299
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1935  CACGTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCCTTGGGCAG  1994

Query  2300  TCCTGTTGGAGACGGAGCTTCCACAGTATTGAAATCAATACTCGACAGAGCTTCCGAGCT  2359
             |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||
Sbjct  1995  TCCTGTTGGAGACGGAGCTTCCACGGTACTGAAATCAACACTCGACAGAGCTTCGGAGCT  2054

Query  2360  TATCCGGGCTAATAATTTCAACAACGCAGGGATAGCTCTATGGCGCGCTTCCTTTAATGA  2419
             ||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct  2055  TATTCGGGCTAATAATTTCAACAACGCAGGCATGGCTCTATGGCGCGCTTCCTTTAACGA  2114

Query  2420  GTTCTTTAATATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATCATGCAGAGTTT  2479
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2115  GTTCTTTAATATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATCATGCAGAGTTT  2174

Query  2480  G----CA-A-TTGCCACCGCATTTTGCCACTGAGATATCTGAAGAAGCTGCAAAAGCCAT  2533
             |    || | ||||||||||| ||||| |||||||||||||| | |||||||||||||||
Sbjct  2175  GAATTCACAATTGCCACCGCAGTTTGCTACTGAGATATCTGATGCAGCTGCAAAAGCCAT  2234

Query  2534  TGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATTGATGAGCAGCA  2593
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2235  TGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATTGATGAGCAGCA  2294

Query  2594  AAAGAGGATACTGATGGAGTTTTTGAAACGATCTATGCTCGGAAGCCAGAAAACCGAGCC  2653
             |||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  2295  AAAGAGAATACTAATGGAGTTTTTGAAAAGATCTATGCTCGGAAGCCAGAAAACCGAGCC  2354

Query  2654  AGTATTAAGTTGA  2666
             ||| |||||||||
Sbjct  2355  AGTCTTAAGTTGA  2367


> Ahg920567 jgi|Araly1|920567|scaffold_101848.1
Length=2353

 Score = 1242 bits (672),  Expect = 0.0
 Identities = 1428/1781 (80%), Gaps = 100/1781 (6%)
 Strand=Plus/Plus

Query  908   ACCAGATCAGCGTTTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGG  967
             ||||||||||| ||| ||||| || |||| || || ||| |||| |||| |||| || ||
Sbjct  548   ACCAGATCAGCATTTTGGACAACCAAATACACAATTTCATTCTGATGGGTCTCATATCGG  607

Query  968   ATCGCCAAACT-TTTCTCCTTTTCCAAATT-TGCAGCCTCAGTTGCCTAGCATGCATCAT  1025
             ||||||||| | | ||||| ||||||| || | || |||||||||  | |||  |  |||
Sbjct  608   ATCGCCAAA-TCTCTCTCCATTTCCAAGTTCT-CATCCTCAGTTGGTTGGCA--C-GCAT  662

Query  1026  GGATCACCGCAGCAT-ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAA  1084
             || ||||||||  || |||||||||| ||| |||||||| ||| ||||||||  ||| ||
Sbjct  663   GGGTCACCGCA-AATCACTGGAAACATGCCACAGTTTCGACCTTCTCTTCCTGGGAACAA  721

Query  1085  TCTCCCTCCAGCTCAATGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCCGGGAT  1144
             || ||| |||||||||||||||||| | |||||||||  |||||| |||||||| |||||
Sbjct  722   TCGCCCCCCAGCTCAATGGATGAATGGCCAAAATATGTTTCCTGGAGATAGTTCTGGGAT  781

Query  1145  CATGAATAATGCGATGCTACAACAGC--CT-CCTCATCAAAACGGTTTGATGCCTC--CA  1199
             |||||| ||   | | | ||||||||   | ||||||||||||||| | |||||||  ||
Sbjct  782   CATGAACAACATGTTACCACAACAGCAGTTACCTCATCAAAACGGTCTAATGCCTCAACA  841

Query  1200  -CA---GATG---C--A-G--GGCT-CTCAGAATAGGTTACCACATCCGATGCAGCCTCC  1246
              ||   ||||   |  | |  || | ||||||||||||||  ||||||||||||| | ||
Sbjct  842   GCAGCGGATGCCTCAGATGCAGGTTCCTCAGAATAGGTTAGTACATCCGATGCAG-C-CC  899

Query  1247  TCTCGGGCATATGCCAGGAATGCAGCCTCAGTTATTTAATTCCCATCTTTCTCGATCATC  1306
              | ||||||| || ||||||||||||||||  ||||||||||| | |||||||| ||| |
Sbjct  900   -CACGGGCATTTGTCAGGAATGCAGCCTCAACTATTTAATTCCAACCTTTCTCGGTCAGC  958

Query  1307  ATCCTCTGGAAATTATGATGGAATGCTTGGGTTTGGTGATCTGAGGGAAGTAAGACCAGG  1366
             |||||| || | |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  959   ATCCTCGGGCAGTTATGATGCAATGCTTGGGTTTGGTGATCTGAGGGAAGCAAGACCAGG  1018

Query  1367  ATCAG-GTCATGGGAACAGACAGAATGTGCGTTTTCCCCAACAAGGCTTTGATGCTGG-C  1424
             ||| | |||||||||||||||| ||  |||| ||||  ||||| || ||||||| ||| |
Sbjct  1019  ATC-GAGTCATGGGAACAGACAAAACATGCGCTTTCTTCAACAGGGTTTTGATGGTGGAC  1077

Query  1425  GTTC--A-GAG----AA-G-AT---ATCCATTCCGGTCTAAATATATGTCAGCTGGTGAG  1472
              |||  | |||    || | ||    ||| |||||||| ||||||||| |||||| ||| 
Sbjct  1078  -TTCAGAGGAGAAATAATGCATGGCCTCCTTTCCGGTCGAAATATATGACAGCTGTTGAA  1136

Query  1473  ATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGATCCTTATGTTGAT  1532
             |||||||| || || |||||||| ||||| ||||| || ||||||||||||||||| |||
Sbjct  1137  ATAGAGAACATCCTAAGAATGCAACTTGTGGCTACCCATAGCAATGATCCTTATGTAGAT  1196

Query  1533  GATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAACTGAAGCATCAT  1592
             ||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct  1197  GATTATTACCACCAGGCATGTCTTGCTAAGAAATCTGCTGGTGCAAAACTGAAGCATCAT  1256

Query  1593  TTCTGTCCAAATCATTTGAGGGACCTTCAA-CAGCGTGCACGGTCG-AACAACGAGCCCC  1650
             |||||||||||||||||||| ||||||| | |  ||||| || ||  ||||| |||||||
Sbjct  1257  TTCTGTCCAAATCATTTGAGAGACCTTCCATCT-CGTGCCCG-TCCTAACAATGAGCCCC  1314

Query  1651  ATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATCCGCAGGCCTC  1710
             | || |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct  1315  ACGCATTTCTTCAGGTTGATGCTCTTGGTAGAGTTCCTTTCTCTTCGATCCGCAGGCCTC  1374

Query  1711  GTCCTCTGCTTGAAGTGGACCCTCCAAATTCAGCTAAATTTGGTAATGC-AGAGCATAAA  1769
             | |||||||||||| |||| |||||||||||| | |||| ||||||| | |||||| |||
Sbjct  1375  GGCCTCTGCTTGAAATGGATCCTCCAAATTCAACAAAATCTGGTAAT-CTAGAGCAGAAA  1433

Query  1770  CCTACGGATAAGCCCCTTGATCAAGAGCCGATGCTTGCAGCTAGAGTG-TACATTGAGGA  1828
               ||| || ||||||||||| |||||||| |||||||||||||| ||| |  ||||||||
Sbjct  1434  GATACAGACAAGCCCCTTGAACAAGAGCCAATGCTTGCAGCTAGGGTGATT-ATTGAGGA  1492

Query  1829  TGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTTAACCAACT  1888
              ||||| |  ||| ||||||| || |||||||| || || ||||| ||||| ||  ||||
Sbjct  1493  AGGTCTATACCTCTTCCTTGAGGTAGATGATATTGACCGGTTCTTAGAGTTCAATAAACT  1552

Query  1889  CCAGGACGGAGGACACCAGTTGAAACAAA-GACGACAAGCAT-TGTTGCA-GAGCCTTGC  1945
             ||| || || ||| |||||||||  |||| | || ||||| | ||||| | | || ||||
Sbjct  1553  CCAAGATGGTGGAAACCAGTTGAGGCAAAAG-CGGCAAGC-TCTGTTGGATGGGC-TTGC  1609

Query  1946  GGTTTCACTTCAGCTCGGTGATCCC-CTCGCCAAGAATGGGCAAAGCCAGTCT-CTTG-A  2002
              || ||||| ||||| | ||| ||| || |  ||||| ||||||| | |||   |||| |
Sbjct  1610  AGTGTCACTGCAGCTTGTTGA-CCCACTTGGTAAGAACGGGCAAAAC-AGTGGGCTTGCA  1667

Query  2003  T----G-ATTTTCTCTTTCTAAGGGTTATCTCTCTTCCAAAGGGTCGAAAGCTACTTATA  2057
             |    | || || ||||||||||  ||| ||| |||| |||||| || |||||||||| |
Sbjct  1668  TTTCAGGATCTTGTCTTTCTAAGAATTACCTCCCTTCGAAAGGGCCGGAAGCTACTTACA  1727

Query  2058  AGGTATCTTCAGCTAATTTTCCCTGGCAGCGA-CCTAATGCGGATAGTTTGCATGGCCAT  2116
             ||||| || |||||  |||||||||||||||| || |||||| || ||||||||||| ||
Sbjct  1728  AGGTACCTCCAGCTTCTTTTCCCTGGCAGCGATCC-AATGCGAATTGTTTGCATGGCTAT  1786

Query  2117  TTTCCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAA-  2175
             |||  | || |||||||| ||||| ||||| |  ||||| ||  | || | || ||||| 
Sbjct  1787  TTTTAGACACTTAAGGTCTTTGTTTGGAGTGCGATCATCAGATACTGAAACCA-CAAAAA  1845

Query  2176  CCACAAAT-AAGCTTGCAACAGTTATCAACTTG-TGCATTCAAAACATGGAG-TTAGGAC  2232
             |||||| | || ||||||| |||| ||  |||  |||||||| | ||||||  || ||||
Sbjct  1846  CCACAA-TCAAACTTGCAAAAGTTGTCG-CTTTATGCATTCAGACCATGGATCTT-GGAC  1902

Query  2233  CGGTAAGCAC-GTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCC  2291
             | |||||| | |||||||||||| || |||||||||||||||||| ||||||| || || 
Sbjct  1903  CCGTAAGC-CTGTGTCTAGCAGCAGTTTCTTGTTCTTCTGAGCAGCCACCGCTTCGTCCT  1961

Query  2292  TTAGGCAGTCCTGTTGGAGACGGAGCTTCCAC-AGTATTGAAATCAATACTCGACAGAGC  2350
             || || |||||||| ||||||| |||| |||  | || | |||||   |||||| |||||
Sbjct  1962  TTGGGTAGTCCTGTCGGAGACGAAGCTACCATTA-TACTCAAATCTGCACTCGATAGAGC  2020

Query  2351  TTCCGAGCTTATCCGGGCTAATAATTTCAACAACGCAGGGAT-AGCTCTATGGCGCGCTT  2409
             | |||||||| |||| |||||||||| ||||||| |||| || |  ||| ||||| ||||
Sbjct  2021  TACCGAGCTTCTCCGTGCTAATAATTACAACAACTCAGGCATGAA-TCTGTGGCGTGCTT  2079

Query  2410  CCTTTAATGAGTTCTTTAA-TATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATC  2468
             ||||| |||||||||| || | |  ||||||   ||||||| ||||| ||||| || || 
Sbjct  2080  CCTTTGATGAGTTCTTCAACT-TACTGATGAAACACTGCATAAGCAAGTACGACAGTATA  2138

Query  2469  ATGCAGAG--T---TT-GCAATTGCCACCGCATTTTGCCACTGAGATATCTGAAGAAGCT  2522
             |||||||   |   || |||||||||||| || |||||||| |||||||||||||  |||
Sbjct  2139  ATGCAGAACCTGAATTCGCAATTGCCACCACACTTTGCCACAGAGATATCTGAAGCTGCT  2198

Query  2523  GCAAAAGCCATTGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATT  2582
             ||| ||||||||||| | |||||||| || |||||||||||  | |||||||| ||||| 
Sbjct  2199  GCACAAGCCATTGTCAGGGAAATGCCTATCGAGCTTCTACGAGCGAGTTTCCCGCACATA  2258

Query  2583  -GATGA-GCAGCAAAAGAGGATACT-GATGGAGTTTTTGAA  2620
              |  || | |||||||||| ||||| | |||| || |||||
Sbjct  2259  AGC-GATG-AGCAAAAGAGAATACTTG-TGGAATTCTTGAA  2296



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 113280388630


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5