BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79090.1 Length=3000 Score E Sequences producing significant alignments: (Bits) Value Ahg909539 jgi|Araly1|909539|Al_scaffold_0002_2620 3764 0.0 Ahg920567 jgi|Araly1|920567|scaffold_101848.1 1242 0.0 > Ahg909539 jgi|Araly1|909539|Al_scaffold_0002_2620 Length=2367 Score = 3764 bits (2038), Expect = 0.0 Identities = 2251/2353 (96%), Gaps = 18/2353 (1%) Strand=Plus/Plus Query 323 TCCCGTAACTCAGGATCTTAAGAAATTTGGAGATAATTCTACAGGTAACACAATGTTTGA 382 |||||| ||| ||||||||||||| |||||||||||| || ||||| | ||||||||||| Sbjct 24 TCCCGTGACTGAGGATCTTAAGAATTTTGGAGATAATCCTTCAGGTGATACAATGTTTGA 83 Query 383 TGCATCTCAATATGCCTTTTTTGGGAACGATGTTGTCGAGGAGGTTGAGCTGGGTGGATT 442 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 84 TGCATCTCAGTATGCCTTTTTTGGGAACGATGTTGTCGAGGAGGTTGAGCTTGGTGGATT 143 Query 443 GGAAGAAGAAGATGAGATTTTGTCTTTCACTGGAATAGCAGAAGACTTTTCATTTGATAA 502 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 GGATGAGGAAGATGAGATTTTGTCTTTCACTGGAATAGCAGAAGACTTTTCATTTGATAA 203 Query 503 GGAAGAGGTTGGAGATTCTAGACTTCTGTCTGACGTTGATGATCTTGCTAGTACTTTTTC 562 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 204 GGAAGAGGTTGAAGATTCTAGACTTCTGTCTGACGTTGATGATCTTGCTAGTACTTTTTC 263 Query 563 AAAGTTGAATAGGGAACCTGATGTGTATAGTAA-TACGGGGCCAATCACTGATAGGCGAT 621 |||||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||| Sbjct 264 AAAGTTGAATAGGGAACCTGATGTATATAG-AAGTACAGGGCCAATCACTGATAGGCGAT 322 Query 622 CAAGT-CAGAATTCTTTAGCTGCTGAGTGGACCCATGGGGAAGAGTTACCAAATTGGTAC 680 ||| | ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 323 CAA-TACAGAATTCTCTAGCTGCTGAGTGGACCCATGGGGAGGAGTTGCCAAATTGGTAC 381 Query 681 GGCCGGCAAATACTGGACTCTGATGCCATTAAAGATGACAAGGTGTGGTCAGCACAGCCA 740 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 382 GGCCGGCCAATACTGGACTCTGATGCCATTAAAGATGACAAGGCGTGGTCAGCACAGCCT 441 Query 741 TTTTCATCTCTGGACCGTGTTGAGCAGAGAATCCCTGACAGAACAAAATTGTATCCAGAA 800 |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| Sbjct 442 TTTTCATCTCTGGACCTTGTTCAGCAGAGAAACCCTGACAGAACAAAATTGTATCCAGAA 501 Query 801 CCACAACGTCAACTGCATCAAGACCATAATCAACAACAGTTTTCCAGCGAACCAATTCTT 860 ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 502 CCACAGGGTCAACCGCATCAAGACCATAATCAACAACAGTTTTCCAGCGAACCAATTCTT 561 Query 861 GTCCCGAAGTCATCTTTTGTTTCATACCCTCCTCCAGGCAGCATATCACCAGATCAGCGT 920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 562 GTCCCGAAGTCATCTTTTGTTTCATACCCTCCTCCAGGCAGCATATCACCAGATCAGCGT 621 Query 921 TTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGGATCGCCAAACTTT 980 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 622 TTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGGATCGCCAAACTTC 681 Query 981 TCTCCTTTTCCAAATTTGCAGCCTCAGTTGCCTAGCATGCATCATGGATCACCGCAGCAT 1040 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 682 TCTCCTTTTCCAACTTTGCAGCCTCAGTTGCCTACCATGCATCATGGATCACCGCAGCAT 741 Query 1041 ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAATCTCCCTCCAGCTCAA 1100 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 742 ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAATCGCCCTCCAGCTCAA 801 Query 1101 TGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCCGGGATCATGAATAATGCGATG 1160 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 802 TGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCTGGGATCATGAATAATGCGATG 861 Query 1161 CTACAACAGCCTCCTCATCAAAACGGTTTGATGCCTCCACAGATGCAGGGCTCTCAGAAT 1220 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 862 CTACAACAGCCACCTCATCAAAACGGTTTGATGCCTCCACAGATGCAGGGCTCTCAGAAT 921 Query 1221 AGGTTACCACATCCGATGCAGCCTCCTCTCGGGCATATGCCAGGAATGCAGCCTCAGTTA 1280 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 922 AGGTTACCACATCCGATGCAGCCTTCTCTCGGGCATATGCCAGGAATGCAGCCTCAGTTA 981 Query 1281 TTTAATTCCCATCTTTCTCGATCATCATCCTCTGGAAATTATGATGGAATGCTTGGGTTT 1340 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 982 TTTAATTCCCATCTTTCTCGATCATCTTCATCTGGAAATTATGATGGAATGCTTGGGTTT 1041 Query 1341 GGTGATCTGAGGGAAGTAAGACCAGGATCAGGTCATGGGAACAGACAGAATGTGCGTTTT 1400 |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1042 GGTGATCTGAGGGAAGCAAGACCAGGATCAGGTCATGGGAACAGACAGAACATGCGTTTT 1101 Query 1401 CCCCAACAAGGCTTTGATGCTGGCGTTCAGAGAAGATATCCATTCCGGTCTAAATATATG 1460 | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1102 CATCAACAAGGCTTTGATACTGGCATTCAGAGAAGATATCCATTCCGGTCTAAATATATG 1161 Query 1461 TCAGCTGGTGAGATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGAT 1520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 TCAGCTGGTGAGATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGAT 1221 Query 1521 CCTTATGTTGATGATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAA 1580 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1222 CCTTACGTTGATGATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAA 1281 Query 1581 CTGAAGCATCATTTCTGTCCAAATCATTTGAGGGACCTTCAACAGCGTGCACGGTCGAAC 1640 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| Sbjct 1282 CTGAAGCATCATTTCTGTCCAAATCATTTGAGGGACCTCCAACAGCGTGCACGGACAAAC 1341 Query 1641 AACGAGCCCCATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATC 1700 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1342 AACGAGCCCCATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATT 1401 Query 1701 CGCAGGCCTCGTCCTCTGCTTGAAGTGGACCCTCCAAATTCAGCTAAATTTGGTAATGCA 1760 ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1402 CGCAGGCCTCGTCCTCTTCTTGAAGTGGACCCTCCAAATTCAGCTAAATCTGGTAATGCA 1461 Query 1761 GAGCATAAACCTACGGATAAGCCCCTTGATCAAGAGCCGATGCTTGCAGCTAGAGTGTAC 1820 ||||||| || | ||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1462 GAGCATA--CC---G-ATAAGCCCCTTGATCAAGAACCGATGCTTGCAGCTAGAGTATAC 1515 Query 1821 ATTGAGGATGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTT 1880 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1516 ATTGAGGATGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTC 1575 Query 1881 AACCAACTCCAGGACGGAGGACACCAGTTGAAACAAAGACGACAAG-CATTGTTGCAGAG 1939 ||||||||||||||||||||| ||||||||||| |||||||||| | |||||||||||| Sbjct 1576 AACCAACTCCAGGACGGAGGAAACCAGTTGAAAAAAAGACGACA-GTCATTGTTGCAGAA 1634 Query 1940 CCTTGCGGTTTCACTTCAGCTCGGTGATCCCCTCGCCAAGAATGGGCAAAGCCAGTCTCT 1999 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1635 CCTTGCGGCTTCACTTCAGCTCGGTGATCCCCTCGCCAAGAATGGGCAAAGCCGGTCTCA 1694 Query 2000 TGATGATTTTCTCTTTCTAAGGGTTATCTCTCTTCCAAAGGGTCGAAAGCTACTTATAAG 2059 |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| Sbjct 1695 TGATGATTTTCTCTTTCTAAGGATAATCTCTCTTCCAAAGGGTCGGAAGCTACTTATAAG 1754 Query 2060 GTATCTTCAGCTAATTTTCCCTGGCAGCGACCTAATGCGGATAGTTTGCATGGCCATTTT 2119 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1755 GTATCTTCAGCTAATTTTCCCTGGCAGCGACCTAATGCGGATAGTTTGTATGGCCATTTT 1814 Query 2120 CCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAACCAC 2179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1815 CCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAACCAC 1874 Query 2180 AAATAAGCTTGCAACAGTTATCAACTTGTGCATTCAAAACATGGAGTTAGGACCGGTAAG 2239 | |||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 1875 ATATAAACTTGCAAAAGTTATCAACGTGTGCATTCAAAACATGGAGTTGGGACCGGTAAG 1934 Query 2240 CACGTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCCTTAGGCAG 2299 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1935 CACGTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCCTTGGGCAG 1994 Query 2300 TCCTGTTGGAGACGGAGCTTCCACAGTATTGAAATCAATACTCGACAGAGCTTCCGAGCT 2359 |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||| Sbjct 1995 TCCTGTTGGAGACGGAGCTTCCACGGTACTGAAATCAACACTCGACAGAGCTTCGGAGCT 2054 Query 2360 TATCCGGGCTAATAATTTCAACAACGCAGGGATAGCTCTATGGCGCGCTTCCTTTAATGA 2419 ||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 2055 TATTCGGGCTAATAATTTCAACAACGCAGGCATGGCTCTATGGCGCGCTTCCTTTAACGA 2114 Query 2420 GTTCTTTAATATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATCATGCAGAGTTT 2479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2115 GTTCTTTAATATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATCATGCAGAGTTT 2174 Query 2480 G----CA-A-TTGCCACCGCATTTTGCCACTGAGATATCTGAAGAAGCTGCAAAAGCCAT 2533 | || | ||||||||||| ||||| |||||||||||||| | ||||||||||||||| Sbjct 2175 GAATTCACAATTGCCACCGCAGTTTGCTACTGAGATATCTGATGCAGCTGCAAAAGCCAT 2234 Query 2534 TGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATTGATGAGCAGCA 2593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2235 TGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATTGATGAGCAGCA 2294 Query 2594 AAAGAGGATACTGATGGAGTTTTTGAAACGATCTATGCTCGGAAGCCAGAAAACCGAGCC 2653 |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2295 AAAGAGAATACTAATGGAGTTTTTGAAAAGATCTATGCTCGGAAGCCAGAAAACCGAGCC 2354 Query 2654 AGTATTAAGTTGA 2666 ||| ||||||||| Sbjct 2355 AGTCTTAAGTTGA 2367 > Ahg920567 jgi|Araly1|920567|scaffold_101848.1 Length=2353 Score = 1242 bits (672), Expect = 0.0 Identities = 1428/1781 (80%), Gaps = 100/1781 (6%) Strand=Plus/Plus Query 908 ACCAGATCAGCGTTTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGG 967 ||||||||||| ||| ||||| || |||| || || ||| |||| |||| |||| || || Sbjct 548 ACCAGATCAGCATTTTGGACAACCAAATACACAATTTCATTCTGATGGGTCTCATATCGG 607 Query 968 ATCGCCAAACT-TTTCTCCTTTTCCAAATT-TGCAGCCTCAGTTGCCTAGCATGCATCAT 1025 ||||||||| | | ||||| ||||||| || | || ||||||||| | ||| | ||| Sbjct 608 ATCGCCAAA-TCTCTCTCCATTTCCAAGTTCT-CATCCTCAGTTGGTTGGCA--C-GCAT 662 Query 1026 GGATCACCGCAGCAT-ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAA 1084 || |||||||| || |||||||||| ||| |||||||| ||| |||||||| ||| || Sbjct 663 GGGTCACCGCA-AATCACTGGAAACATGCCACAGTTTCGACCTTCTCTTCCTGGGAACAA 721 Query 1085 TCTCCCTCCAGCTCAATGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCCGGGAT 1144 || ||| |||||||||||||||||| | ||||||||| |||||| |||||||| ||||| Sbjct 722 TCGCCCCCCAGCTCAATGGATGAATGGCCAAAATATGTTTCCTGGAGATAGTTCTGGGAT 781 Query 1145 CATGAATAATGCGATGCTACAACAGC--CT-CCTCATCAAAACGGTTTGATGCCTC--CA 1199 |||||| || | | | |||||||| | ||||||||||||||| | ||||||| || Sbjct 782 CATGAACAACATGTTACCACAACAGCAGTTACCTCATCAAAACGGTCTAATGCCTCAACA 841 Query 1200 -CA---GATG---C--A-G--GGCT-CTCAGAATAGGTTACCACATCCGATGCAGCCTCC 1246 || |||| | | | || | |||||||||||||| ||||||||||||| | || Sbjct 842 GCAGCGGATGCCTCAGATGCAGGTTCCTCAGAATAGGTTAGTACATCCGATGCAG-C-CC 899 Query 1247 TCTCGGGCATATGCCAGGAATGCAGCCTCAGTTATTTAATTCCCATCTTTCTCGATCATC 1306 | ||||||| || |||||||||||||||| ||||||||||| | |||||||| ||| | Sbjct 900 -CACGGGCATTTGTCAGGAATGCAGCCTCAACTATTTAATTCCAACCTTTCTCGGTCAGC 958 Query 1307 ATCCTCTGGAAATTATGATGGAATGCTTGGGTTTGGTGATCTGAGGGAAGTAAGACCAGG 1366 |||||| || | |||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 959 ATCCTCGGGCAGTTATGATGCAATGCTTGGGTTTGGTGATCTGAGGGAAGCAAGACCAGG 1018 Query 1367 ATCAG-GTCATGGGAACAGACAGAATGTGCGTTTTCCCCAACAAGGCTTTGATGCTGG-C 1424 ||| | |||||||||||||||| || |||| |||| ||||| || ||||||| ||| | Sbjct 1019 ATC-GAGTCATGGGAACAGACAAAACATGCGCTTTCTTCAACAGGGTTTTGATGGTGGAC 1077 Query 1425 GTTC--A-GAG----AA-G-AT---ATCCATTCCGGTCTAAATATATGTCAGCTGGTGAG 1472 ||| | ||| || | || ||| |||||||| ||||||||| |||||| ||| Sbjct 1078 -TTCAGAGGAGAAATAATGCATGGCCTCCTTTCCGGTCGAAATATATGACAGCTGTTGAA 1136 Query 1473 ATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGATCCTTATGTTGAT 1532 |||||||| || || |||||||| ||||| ||||| || ||||||||||||||||| ||| Sbjct 1137 ATAGAGAACATCCTAAGAATGCAACTTGTGGCTACCCATAGCAATGATCCTTATGTAGAT 1196 Query 1533 GATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAACTGAAGCATCAT 1592 ||||| || ||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1197 GATTATTACCACCAGGCATGTCTTGCTAAGAAATCTGCTGGTGCAAAACTGAAGCATCAT 1256 Query 1593 TTCTGTCCAAATCATTTGAGGGACCTTCAA-CAGCGTGCACGGTCG-AACAACGAGCCCC 1650 |||||||||||||||||||| ||||||| | | ||||| || || ||||| ||||||| Sbjct 1257 TTCTGTCCAAATCATTTGAGAGACCTTCCATCT-CGTGCCCG-TCCTAACAATGAGCCCC 1314 Query 1651 ATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATCCGCAGGCCTC 1710 | || |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| Sbjct 1315 ACGCATTTCTTCAGGTTGATGCTCTTGGTAGAGTTCCTTTCTCTTCGATCCGCAGGCCTC 1374 Query 1711 GTCCTCTGCTTGAAGTGGACCCTCCAAATTCAGCTAAATTTGGTAATGC-AGAGCATAAA 1769 | |||||||||||| |||| |||||||||||| | |||| ||||||| | |||||| ||| Sbjct 1375 GGCCTCTGCTTGAAATGGATCCTCCAAATTCAACAAAATCTGGTAAT-CTAGAGCAGAAA 1433 Query 1770 CCTACGGATAAGCCCCTTGATCAAGAGCCGATGCTTGCAGCTAGAGTG-TACATTGAGGA 1828 ||| || ||||||||||| |||||||| |||||||||||||| ||| | |||||||| Sbjct 1434 GATACAGACAAGCCCCTTGAACAAGAGCCAATGCTTGCAGCTAGGGTGATT-ATTGAGGA 1492 Query 1829 TGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTTAACCAACT 1888 ||||| | ||| ||||||| || |||||||| || || ||||| ||||| || |||| Sbjct 1493 AGGTCTATACCTCTTCCTTGAGGTAGATGATATTGACCGGTTCTTAGAGTTCAATAAACT 1552 Query 1889 CCAGGACGGAGGACACCAGTTGAAACAAA-GACGACAAGCAT-TGTTGCA-GAGCCTTGC 1945 ||| || || ||| ||||||||| |||| | || ||||| | ||||| | | || |||| Sbjct 1553 CCAAGATGGTGGAAACCAGTTGAGGCAAAAG-CGGCAAGC-TCTGTTGGATGGGC-TTGC 1609 Query 1946 GGTTTCACTTCAGCTCGGTGATCCC-CTCGCCAAGAATGGGCAAAGCCAGTCT-CTTG-A 2002 || ||||| ||||| | ||| ||| || | ||||| ||||||| | ||| |||| | Sbjct 1610 AGTGTCACTGCAGCTTGTTGA-CCCACTTGGTAAGAACGGGCAAAAC-AGTGGGCTTGCA 1667 Query 2003 T----G-ATTTTCTCTTTCTAAGGGTTATCTCTCTTCCAAAGGGTCGAAAGCTACTTATA 2057 | | || || |||||||||| ||| ||| |||| |||||| || |||||||||| | Sbjct 1668 TTTCAGGATCTTGTCTTTCTAAGAATTACCTCCCTTCGAAAGGGCCGGAAGCTACTTACA 1727 Query 2058 AGGTATCTTCAGCTAATTTTCCCTGGCAGCGA-CCTAATGCGGATAGTTTGCATGGCCAT 2116 ||||| || ||||| |||||||||||||||| || |||||| || ||||||||||| || Sbjct 1728 AGGTACCTCCAGCTTCTTTTCCCTGGCAGCGATCC-AATGCGAATTGTTTGCATGGCTAT 1786 Query 2117 TTTCCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAA- 2175 ||| | || |||||||| ||||| ||||| | ||||| || | || | || ||||| Sbjct 1787 TTTTAGACACTTAAGGTCTTTGTTTGGAGTGCGATCATCAGATACTGAAACCA-CAAAAA 1845 Query 2176 CCACAAAT-AAGCTTGCAACAGTTATCAACTTG-TGCATTCAAAACATGGAG-TTAGGAC 2232 |||||| | || ||||||| |||| || ||| |||||||| | |||||| || |||| Sbjct 1846 CCACAA-TCAAACTTGCAAAAGTTGTCG-CTTTATGCATTCAGACCATGGATCTT-GGAC 1902 Query 2233 CGGTAAGCAC-GTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCC 2291 | |||||| | |||||||||||| || |||||||||||||||||| ||||||| || || Sbjct 1903 CCGTAAGC-CTGTGTCTAGCAGCAGTTTCTTGTTCTTCTGAGCAGCCACCGCTTCGTCCT 1961 Query 2292 TTAGGCAGTCCTGTTGGAGACGGAGCTTCCAC-AGTATTGAAATCAATACTCGACAGAGC 2350 || || |||||||| ||||||| |||| ||| | || | ||||| |||||| ||||| Sbjct 1962 TTGGGTAGTCCTGTCGGAGACGAAGCTACCATTA-TACTCAAATCTGCACTCGATAGAGC 2020 Query 2351 TTCCGAGCTTATCCGGGCTAATAATTTCAACAACGCAGGGAT-AGCTCTATGGCGCGCTT 2409 | |||||||| |||| |||||||||| ||||||| |||| || | ||| ||||| |||| Sbjct 2021 TACCGAGCTTCTCCGTGCTAATAATTACAACAACTCAGGCATGAA-TCTGTGGCGTGCTT 2079 Query 2410 CCTTTAATGAGTTCTTTAA-TATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATC 2468 ||||| |||||||||| || | | |||||| ||||||| ||||| ||||| || || Sbjct 2080 CCTTTGATGAGTTCTTCAACT-TACTGATGAAACACTGCATAAGCAAGTACGACAGTATA 2138 Query 2469 ATGCAGAG--T---TT-GCAATTGCCACCGCATTTTGCCACTGAGATATCTGAAGAAGCT 2522 ||||||| | || |||||||||||| || |||||||| ||||||||||||| ||| Sbjct 2139 ATGCAGAACCTGAATTCGCAATTGCCACCACACTTTGCCACAGAGATATCTGAAGCTGCT 2198 Query 2523 GCAAAAGCCATTGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATT 2582 ||| ||||||||||| | |||||||| || ||||||||||| | |||||||| ||||| Sbjct 2199 GCACAAGCCATTGTCAGGGAAATGCCTATCGAGCTTCTACGAGCGAGTTTCCCGCACATA 2258 Query 2583 -GATGA-GCAGCAAAAGAGGATACT-GATGGAGTTTTTGAA 2620 | || | |||||||||| ||||| | |||| || ||||| Sbjct 2259 AGC-GATG-AGCAAAAGAGAATACTTG-TGGAATTCTTGAA 2296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 113280388630 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5