BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79270.1 Length=2531 Score E Sequences producing significant alignments: (Bits) Value Ahg477094 jgi|Araly1|477094|fgenesh2_kg.2__2224__AT1G79270.1 3661 0.0 > Ahg477094 jgi|Araly1|477094|fgenesh2_kg.2__2224__AT1G79270.1 Length=2477 Score = 3661 bits (1982), Expect = 0.0 Identities = 2357/2525 (93%), Gaps = 77/2525 (3%) Strand=Plus/Plus Query 36 TATAGAATTAATTGTGTTAGTTAATGCCAAATTAAGATTCTCTTTTTTAAAATCACTTTT 95 |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1 TATAGAATTAATTGTGTTAGTTAATGCCAAATTAAGATTCTCTTTTTT-TAATAACTTTT 59 Query 96 TGAAGAAGCACTTACAAGAGAGTTGTGTTAAGAATAGATTCCAGATGGAAAAGTTGGCAA 155 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TGAAGAAGCACTTTGAAGAGAGTTGTGTTAAGAATAGATTCCAGATGGAAAAGTTGGCAA 119 Query 156 GAAAAGATGTTTTAAG-TTTTTGCCTTGTCGTCTAATCCAACGGTCGATCTTCGTTCATA 214 |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 120 TAAAAGATGTTTT-AGTTTTTTGCCTTGTCGTCTAATCCAACGGTCAATCTTCGTTCATA 178 Query 215 TCAAGAATCCTTATGACGTGGACCATTCTCTTCCCTCCATCTGTACCTCTTCCCAACCTC 274 |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 179 TCAAGAATCC--ATGACGTGGACCATTCTCTTCCCTCCATCTGTACCTCTTCTCAACCTC 236 Query 275 TATTTT--TTAATTTACATCGAAAATAAATAAGAAGGATTGCaaaagaaaaaatag-aaa 331 | |||| || |||| |||| |||||||||||||||||||||||||||||||| | ||| Sbjct 237 TTTTTTAATTTATTTGCATCTAAAATAAATAAGAAGGATTGCAAAAGAAAAAA-GGAAAA 295 Query 332 aaaaaCTCTCTGttcttctttcttcttcttcttcgtcgtaagcca-ttaccatttc-t-t 388 ||||| |||||||||||||||||||||||| | |||||||||| |||||||||| | | Sbjct 296 AAAAAAACTCTGTTCTTCTTTCTTCTTCTTC-T--TCGTAAGCCATTTACCATTTCTTCT 352 Query 389 ctc-c-c-tctctctgtttttctttGTTGCGTATCTGTACTTAGTTTTCAAACATAAAAA 445 ||| | | |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 353 CTCTCTCGTCTCTCTGTTTTTCTTTGTTACGTATCTGTACTTTGTTTTCAAACATAAAAA 412 Query 446 TAAAACATATCTTTAGCTGATGTTGTCTTCTTCTTGATAAACAGATTTTCTACAGCtttt 505 ||||| |||||||| | ||||| | | ||||||||| | ||||||||||||||| || Sbjct 413 TAAAAGATATCTTTTGTTGATG-T-T-TTCTTCTTG----A-AGATTTTCTACAGCTATT 464 Query 506 tttC-TTT-CTAATTTAATAATTCTTGAGACTTTTTAAAACCCTCTGCGAAACAGATGAT 563 |||| ||| |||||| |||||||||||||| ||| |||||||||||| |||||||| || Sbjct 465 TTTCTTTTCCTAATTAAATAATTCTTGAGA-ATTTCAAAACCCTCTGCAAAACAGATAAT 523 Query 564 TCGAGTTTTGGTTTCTTCATCTGTGTTTTGATTTTTTCGTCTTTTAT-TCTTAGTCAAAC 622 ||||||||||||||||||||||||||||||||||||||||||||| | || | | ||| Sbjct 524 TCGAGTTTTGGTTTCTTCATCTGTGTTTTGATTTTTTCGTCTTTT-TGTC-T--T--AAC 577 Query 623 ACATAAATTTCTTTTACTAC-TCTTCGTAGATGACTTCTCATGTTCCAAAACATCCTCGT 681 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 578 ACATAAATTTCTTTTACTACTTCTTCGTAGATGACTTCTCATGTTCCAAAACATCCTCGT 637 Query 682 AAATCCTTTGAAGATATGGTGAAGAATCTTAAAGTGGATCCTCTTGCTAAGGTCACTGCC 741 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 638 AAATCCATTGAAGATATGGTGAAGAATCTTAAAGTGGATCCTCTTGCTAAGGTCACTGCC 697 Query 742 TCCACCACTTCCATGGTTTCTGCAAAAGAGAATAAGAATCAGTCAGAGGCAGAGCCATCA 801 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 698 TCCACCACTTCCATGGTTTCTGCAAAAGAGAATAAGAATCAGT------CAGAGCCATCA 751 Query 802 TATTATGAAACTCTTGAGACATATCAAGGCCTGCCTTGTCCTTATGGTGGCTACTATGGA 861 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 752 TATTATGAAACTCTTGAGACATATCAAGGCCTGCCTTGTCCTTATGGAGGCTACTATGGA 811 Query 862 TACTACTATCCAGGTCTTGATGGTTCAGTTGGAGAAGCAAAGGATAATGGATACTATGGT 921 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 812 TTCTACTATCCAGGTCTTGACGGTTCAGTTGGAGAAGCAAAGGATAATGGATACTATGGT 871 Query 922 TATGGAACAGAAGTTCAGTACCCGGTAATGCAAGGGGAAAATGGGTCTGTGATCTACTTG 981 |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| Sbjct 872 TATGGAACAGAAGTTCAGTACCCGGTTATGCAAGGGGAAAATGGATCTTTGATCTACTTG 931 Query 982 ATGCCAGGGTTTCAGTCTTATGATGCAAGCCAAACTTATATGCCTATAAACCCGGTTGGT 1041 |||||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||| Sbjct 932 ATGCCAGGGTTTCAATCTTATGATGCTAGTCAAACTTATATGCCTATAAGCCCGGTTGGT 991 Query 1042 GTATCGAGTCAAGCACTTCATTCGCCGATGTATGCTGCTCAGGGTTATTATCAGAACCAA 1101 || || |||||||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 992 GTTTCTAGTCAAGCACTTCATTCGCCAATGTATGCAGCTCAGGGTTATTACCAGAACCAA 1051 Query 1102 TTTGGTTATGCAGATGTTTCATCGCCCACATATTTATGGGACCCTGTTGGAGACAGGTAT 1161 |||||||||| ||| ||| ||||||| || ||||||||||||||||||||||||| |||| Sbjct 1052 TTTGGTTATGGAGACGTTGCATCGCCGACCTATTTATGGGACCCTGTTGGAGACAAGTAT 1111 Query 1162 GTGTATGGTGTTGCTTCATATACCCCACCCTTGAAACAGAACATATCTTCTTCAAGTCAT 1221 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1112 GTGTATGGTGTTGCTTCAAATACCCCACCCTTGAAACAGAACATATCTTCTTCAAGTCAT 1171 Query 1222 AACCACAACAATTATTATTCAAAGAGCAAGAACTCCTTCACGGGTCACGGCATGGGAGAT 1281 || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1172 AATCACAACAATTATTACTCAAAGAGCAAGAACTCCTTCACGGGCCACGGCATGGGAGAT 1231 Query 1282 CGTCCTAAAACACCGCGAAAAGCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAAC 1341 ||||||||||||||||| | | | | |||||||||||||||| |||||||| |||| Sbjct 1232 CGTCCTAAAACACCGCG---A--A--A-A-AACAGCTATGCCCCACTCCCACTGCATAAC 1282 Query 1342 CAAGAAAAAGGTCGCATTGCTTACCCGATGGACCCAGTAAAGAAAAAGTCTGGAGCTTTA 1401 ||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1283 CAAGAAAGAGGAAGAATTGCTTACCCGATGGACCCGGTAAAGAAAAAGTCTGGAGCTTTG 1342 Query 1402 AATCGGGATGAAACAGAGAAGGCGAAAGCGAGG-ACAAAAGAAAATGGTACA-AGTATGA 1459 ||||||||||||||||||||||||||||||||| || ||||||||||||| | || | | Sbjct 1343 AATCGGGATGAAACAGAGAAGGCGAAAGCGAGGAAC-AAAGAAAATGGTA-ATAGCGTAA 1400 Query 1460 ATGACTTAGCAAACGGTCAAGATCATATTACCAATGGAGAATGTGAGTCATGTTCGTTGG 1519 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1401 ATGACTTAGCAAACGGTCAAGATCATATTACCAATGGAGAATGTGAGTCCTGCTCGTTGG 1460 Query 1520 ATGCTGAAGGGAATGAAAGAAGCAACGGTGTTGGTTCTGTGATCAGAAGGGATCAATATA 1579 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1461 ATGCTGAAGGGAATGAAAGGAGCAACGGTGTTGGTTCTGTGATCAGAAGGGATCAATATA 1520 Query 1580 ACCTC-CCTAGCTTTCAGACCAAATACGAGGAAGCAATCTTTTTTGTGATAAAATCGTAT 1638 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1521 ACCTCACC-AGCTTTCAGACCAAATACGACGAAGCAATCTTTTTTGTGATAAAATCGTAT 1579 Query 1639 AGCGAAGACGACATACACAAGAGCATCAAGTACAATGTCTGGTCTAGTACTCTCAATGGG 1698 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1580 AGCGAAGATGACATACACAAGAGCATTAAGTACAATGTCTGGTCTAGTACTCTCAATGGG 1639 Query 1699 AACAAGAAGTTAGACAGTGCATATCAAGAATCTCAGAAGAAGGCT-GCAGACAAAAGTGG 1757 |||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||| Sbjct 1640 AACAAGAAGTTAGACAGTGCATATCAAGAATCTCAGAAGA-GGATTGCAGAGAAAAGTGG 1698 Query 1758 AAAGTGCCCGGTTTTCCTGTTCTTCTCGGTGAATGCAAGTGGCCAATTCTGCGGTGTAGC 1817 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1699 AAAGTGCCCAGTTTTCCTATTCTTCTCGGTGAATGCAAGTGGCCAATTCTGCGGTGTAGC 1758 Query 1818 TGAGATGATTGGACGAGTTGATTATGAGAAAAGCATGGAGTTCTGGCAACAAGATAAGTG 1877 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1759 TGAGATGATGGGACGAGTTGATTATGAGAAAAGCATGGAGTTCTGGCAACAAGATAAGTG 1818 Query 1878 GACTGGCTATTTTCCGGTGAAGTGGCACATCATCAAAGATGTTCCAAATCCGCAACTACG 1937 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 1819 GACTGGCTATTTTCCGGTCAAGTGGCACATCATCAAAGATGTTCCAAATCCGCAATTACG 1878 Query 1938 ACATATCATACTAGAGAACAATGAGAACAAGCCTGTAACCAATAGCAGAGACACACAAGA 1997 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1879 ACATATCATACTAGAGAACAATGAGAACAAGCCTGTTACCAATAGCAGAGACACACAAGA 1938 Query 1998 GGTGAGGTTGCCTCAAGGGAATGAAGTGTTGAACATCTTTAAGAACTACGCAGCTAAGAC 2057 |||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 1939 GGTGAGGTTGCCACAAGGGAATGAAGTGTTGAACATCTTCAAGAACTATGCAGCAAAGAC 1998 Query 2058 ATCTATTTTAGATGATTTTGATTTTTATGAAAACAGAGAGAAGGTTATGGTACAGAAGAA 2117 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1999 ATCTATATTAGATGATTTTGATTTTTATGAAAACAGAGAGAAGGTTATGGTACAGAAGAA 2058 Query 2118 GCTAAGGTTCCCTCCGGTATTAAAGAAGAAAGAAGAAGACTTGGTTGCTGATTTTAAAAC 2177 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 2059 GCTAAGGTTCCCTCCTGTATTAAAGAAGAAAGAAGAAGACTTGGTTGCTGGTTTCAAAAC 2118 Query 2178 AATGGAGATGTCTAATACAGTCGAAGAGGGAAACACAGAGTTAACCGGG-ACAGTGAGCT 2236 ||||||||| |||||||||||||| | || ||||||||||||| ||||| ||||||| || Sbjct 2119 AATGGAGATATCTAATACAGTCGA-G-GG-AAACACAGAGTTA-CCGGGGACAGTGAACT 2174 Query 2237 AACTAGAAGAACATGTAGTGtttttggtttggtttttt----AAGGATCAATATAAACCG 2292 |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 2175 AACTAGAAGAACATGTAGTGTTTTGGGTTTGGTTTTTTTGTTAAGGATCAATATAAACCG 2234 Query 2293 TCCGATTGTTTCGGATTGCTTTGATTTTATTACAAGCGAGATGGCTTCTTCTTCTATTGT 2352 |||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| Sbjct 2235 TCCGATTGTTTCGGATTGCTTTGATTTTATTACAAGCGAGTTGGCTTCTTGTTTTATTGT 2294 Query 2353 TTCGTTGTATGGTGTAATGTTGGGTTTTTTCTTCAC-tttttttttttGGTTTTGTG--T 2409 ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | Sbjct 2295 TTCGTTGTATGGTGTAATGTTGGGTTTTT-CTTCACCTTTTTTTTTTTGGTTTTGTGAAT 2353 Query 2410 T-GTGTTTATGATATGTTTTGCAATTTGTAATCATTGGCAAAAATGATAGG-TTTGATTT 2467 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2354 TTGTGTTTATGATATGTTTTGCAATTTGTAATCATTGGCAAAAATGATAGGGTTTGATTT 2413 Query 2468 TATAGTGATATAAGAAAACCGGGATACAAAAAGAAAAGAGGTTTAGACATA-AAATGAGT 2526 |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2414 TATAGTGAAATAAGAAAACCGGGATACAAAAAGAAAAGAGGTTTAGACA-AGAAATGAGT 2472 Query 2527 TTCTC 2531 ||||| Sbjct 2473 TTCTC 2477 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95416063725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5