BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79360.1 Length=1784 Score E Sequences producing significant alignments: (Bits) Value Ahg927355 jgi|Araly1|927355|scaffold_202916.1 2621 0.0 > Ahg927355 jgi|Araly1|927355|scaffold_202916.1 Length=1621 Score = 2621 bits (1419), Expect = 0.0 Identities = 1553/1619 (96%), Gaps = 3/1619 (0%) Strand=Plus/Plus Query 84 gaaaaCTCGTGCAACATGGCAGAACCAACTCAGCCGCTTCTGACCGATTCCAACTCGTCA 143 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6 GAAAACTCGTGCAACATGGCAGAACCAACTCAGCCGCTTCTGACCGATTCGAACTCGTCA 65 Query 144 TCACCGAGATCTCTCGACGACACAATCGAGAGTTACATTGGAAGCTTTGGGTGGGCTCAG 203 ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 66 TCACCAAGATCTTTCGACGACACAATCGAGAGTTACATAGGAAGCTTTGGGTGGGCTCAG 125 Query 204 TTTCTTCAAGCGGCTTTAGTCTCATTCTCCGGTGTTTTCGACGCTCAACAAACTTTCATC 263 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 126 TTTCTTCAAGCGGCTTTAGTTTCATTCTCCGGTGTTTTCGACGCTCAACAAACTTTCATC 185 Query 264 TCTGTGTTTACAGACTCCGAACCCACGTGGCACTGCACCGACTCGAACTCGATCTGCCAT 323 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 186 TCTGTGTTCACAGACTCCGAACCCACGTGGCACTGCACCGACTCAAACTCGATCTGCCAT 245 Query 324 GAATCCATCTCCAACATCTGTATCCTCCCCAAAACCGCATGGTCTTGGGATTACTCTCCT 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 GAATCCATCTCCAACATCTGTATCCTCCCCAAAACCGCATGGTCTTGGGATTACTCTCCT 305 Query 384 CACGTCTCTGTTATATCCGAATGGGGTCTCCAATGCGCCGGCTCTTTCGTCAAGGGCTTA 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306 CACGTCTCTGTTATATCCGAATGGGGTCTCCAATGCGCCGGCTCTTTCGTCAAGGGCTTA 365 Query 444 CCGGAGAGTTCTTTCTTCGTCGGATGTTTAATCGGAGGTTTGGTTCTCTCAACACTTGCT 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 CCGGAGAGTTCTTTCTTCGTCGGATGTTTAATCGGAGGTTTGGTTCTCTCAACACTTGCT 425 Query 504 GATTCTTCCTTGGGTCGTAAAAACATGTTGTTTCTGTCCTGTCTCGTTATGGCGATATCA 563 ||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||| Sbjct 426 GATTCTTCCTTGGGTCGTAAAAACATGTTGTTTCTCTCGTGTCTCGTGATGGCGATTTCA 485 Query 564 ACGATGCTAACGGTTTTCTCACCAAACATTTGGGTTTACGCTGTTCTTCGATTCGTTAAT 623 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 ACGATGCTAACCGTTTTCTCACCAAACATTTGGGTTTACGCTGTTCTTCGATTCGTTAAT 545 Query 624 GGATTTGGTCGAGCGACGATAGGGACATGTGCGCTCGTTCTTTCGACGGAATTAGTTGGG 683 ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct 546 GGATTCGGTCGAGCGACGATAGGGACATGTGCCCTCGTGCTTTCGACGGAATTGGTTGGG 605 Query 684 AAGAAATGGCGAGGACGAGTAGGGATAATGAGTTTCTTCGGATTCATGCTTGGCTTTTTG 743 |||||||||||||||||||| || || |||||||||||||||||||||||||| |||||| Sbjct 606 AAGAAATGGCGAGGACGAGTTGGAATCATGAGTTTCTTCGGATTCATGCTTGGATTTTTG 665 Query 744 TCTCTTCCTTTGATGGCTTACATGAACAGAGGAAGTTCTTGGAGGATTCTCTACGCATGG 803 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||| Sbjct 666 TCTCTTCCATTGATGGCTTACATGAACAGAGGAAGTTCGTGGAGGATTCTCTATGTATGG 725 Query 804 ACTTCGATTCCAACGATAATATACTGCGTTCTTGTTCGGTTTTTCGTTTGTGAGTCTCCA 863 || |||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 726 ACGTCGATTCCGACAATAATCTACTGCGTTCTTGTTCGATTTTTCGTTTGTGAGTCTCCG 785 Query 864 AGGTGGCTTTTCGTTAGAGGCCGTAGAGAAGAAGCTATTTCGATTCTCAAAAGGGTTGCT 923 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 786 AGGTGGCTTTTCGTTAGAGGTCGTAAAGAAGAAGCTATTTCGATTCTCAAAAGGGTTGCT 845 Query 924 TCGATTCCGTCTACTGATGTAAGCAGTGGTGGTGCAATATCTATGAGTTTTTCGAGCTTA 983 ||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||| Sbjct 846 TCGATTCCGTCGACTGATGTAAACATTGGTGGTGCAATATCTATGAGCTTTTCGAGCTTA 905 Query 984 CCTTTTGAAGAAGATGAAGAGAAGCCTAGTACTAATGTTAACATCTTCACGACCATGAAG 1043 || |||||||| || ||||||||||||| | |||||||||||||||||||||||||||| Sbjct 906 CCATTTGAAGATGAGGAAGAGAAGCCTA--A-TAATGTTAACATCTTCACGACCATGAAG 962 Query 1044 GTGTTGGTAGAGAAAAGATGGGCGCTTAAGAGATTATCCGCGGTAATGGCCATTGCGTTC 1103 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 ATGTTGGTAGAGAAAAGATGGGCGCTTAAGAGATTATCCGCGGTAATGGCCATTGCGTTC 1022 Query 1104 GGGATTGGTTTGGTCTATTACGGGATGCCTTTAGCGTTATCGAATCTTGATTTCAACATC 1163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 GGGATTGGTTTGGTCTATTACGGGATGCCTTTAGCGTTATCGAATCTTGATTTCAACATC 1082 Query 1164 TATTTAAGTGCAGCGTTTAATGCGTTGATGGATTTACCAGCGAACCTCATCACGCTTTTC 1223 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1083 TATTTAAGTGCAGCGTTTAATGCGTTGATGGATTTACCAGCGAACCTCATCACTCTTTTC 1142 Query 1224 CTAGTCGATAAACTCAGTAGGAGAAACGCGCTTATCGGATTTACGGCTTTAGGTGGAGTC 1283 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1143 CTAGTTGATAAACTCAGTAGGAGAAACGCGCTTATCGGATTTACGGCTTTAGGTGGAGTC 1202 Query 1284 TCTAGCGTTCTCATATTTGCGTTACATAATATGAGAATTGGAAACCACGGGGCGTTACAG 1343 |||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||| Sbjct 1203 TCTAGCGTTCTCATATTTGCGTTACAGAATATGAGAATCGGAAACCATGGGGCGCTACAG 1262 Query 1344 TTGGCGTTAGAGCTAATCTCTTACTTTAGCGCGTGTTCGGCTTTTAACATGGAGATGATA 1403 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1263 CTGGCGTTAGAGCTAATCTCTTACTTTAGTGCGTGTTCCGCTTTTAACATGGAGATGATA 1322 Query 1404 TACACGATCGAGCTGTTTCCGACATGTGTGAGAAACTCGGCTATCGCAATGGCTAGACAG 1463 ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1323 TACACAATCGAGTTGTTTCCTACATGTGTGAGAAACTCGGCTATCGCAATGGCTAGACAG 1382 Query 1464 GCTTTGGTGCTTGGTGGAGTTTTCAGCCCTATTATGGTAGCAGCTGGTCGGAAAAACGCG 1523 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1383 GCTTTGGTGCTTGGTGGGGTTTTCAGCCCTATTATGGTAGCAGCTGGTCGGAAAAACTCG 1442 Query 1524 TTCTGGTCGTTCGGATTGTTTGGTCTTGCTATAGGTTTGTTGGGATTGTTTGCAGTTGGA 1583 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1443 TTCTGGTCGTTCGGGTTGTTCGGTCTTGCTATAGGTTTGTTGGGATTGTTTGCAGTTGGA 1502 Query 1584 TTGCCAGAGACTAGAGGGAGTGATCTATGTGACACTATGGACGAGGAAGAGTGCAAAGAC 1643 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1503 TTGCCAGAGACTAGAGGGAGTGATCTATGTGACACTATGGACGAGGAAGAGTGCAAAGAT 1562 Query 1644 CGGCGGAGTAAAGTCGCCGTTAATAATGTCATTGCATGAAATGGTGAAGAATTTGAAAA 1702 || ||||||||||||||| |||||| ||| ||||||||| ||| ||||||||||||||| Sbjct 1563 CGACGGAGTAAAGTCGCCATTAATAGTGTGATTGCATGATATGATGAAGAATTTGAAAA 1621 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66962650710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5