BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79380.1 Length=1820 Score E Sequences producing significant alignments: (Bits) Value Ahg477103 jgi|Araly1|477103|fgenesh2_kg.2__2233__AT1G79380.1 2422 0.0 > Ahg477103 jgi|Araly1|477103|fgenesh2_kg.2__2233__AT1G79380.1 Length=1728 Score = 2422 bits (1311), Expect = 0.0 Identities = 1636/1779 (92%), Gaps = 78/1779 (4%) Strand=Plus/Plus Query 1 ATATATAGTTTAAtttttttCTAGGTTTTCGTTCGAACTCATGTGGGTTCAGTAAAT--A 58 ||||||||||| |||||||||| || ||||| | ||||||||||||||||||||| | Sbjct 1 ATATATAGTTTCATTTTTTTCT-GGGTTTCG---GTACTCATGTGGGTTCAGTAAATAAA 56 Query 59 AATG-TT-TAAGTCCCCATCTGGCCGCGTCAAAAATACTTAGATAACAACAATTAGTGGT 116 |||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 57 AATGTTTATAAGTCCCCATCTGGCCGCGTCAAAAATAC-TAGAT---AACAATTAGTGGT 112 Query 117 TGACATAGAAAAGTAATGATTGTTGCCGCGTAGAATGAAATTAATAAAATT-ATAAAGAA 175 || ||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||| Sbjct 113 TGGCATAGAAAAGTAATGATTGTTGCCGCGTAGAATGAAAATAAT-AAATTAATTAAGAA 171 Query 176 CAGTGAAGCAATAAATGTTTCCTTGGCGTCTTGAAGAGTAGTCTTCTTAAATATTCCAGC 235 ||||||||||||||| | || || ||||||||||||||||| ||| Sbjct 172 CAGTGAAGCAATAAA--------T---GT-TT------TAGTCTTCTTAAATATTTCAG- 212 Query 236 CCaaaaaaaaaaaGATTCTATCCATTATCAAGAGAAGaaaaaaaaTCTGAATTCCAATTC 295 | |||||||||||||||||||||||||||||| | | ||||||||||||||||| ||||| Sbjct 213 CAAAAAAAAAAAAGATTCTATCCATTATCAAG-G-A-AAAAAAAATCTGAATTCGAATTC 269 Query 296 gaagaagaagaagaagaagaaagGAGATGACTATGGGGAATTTCTTAAAGAGATTTGGAA 355 | || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 270 ------G-AG--GAAGAAGAAAGGAGATGACTATGGGGAATTTCTTAAAGAGATTTGGAA 320 Query 356 GTGG---AA--A-AAGCAGAAGCAGTAGAAATATGACTCTGGGAACGACGTCGTCTCAAT 409 |||| || | ||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 321 GTGGAAAAAGCAGAAGCAGAAGCAGTAGAAGTATGACTCTGGGAACAACGTCGTCTCAAT 380 Query 410 CTCATGAACCATCACCGT---CGGATCCTTCACTCTCCCTTGCCGATAATACCAACGCCA 466 ||||||||||||| |||| |||||||| || |||||||||||||||||| ||||||| Sbjct 381 CTCATGAACCATCTCCGTCGGCGGATCCTCCAGTCTCCCTTGCCGATAATATCAACGCCG 440 Query 467 CCAAGAAGAAGTACGCTCTCATCCCTGACCGCTTCTCTTCCCTCGACCAGGTATCAAAAG 526 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 441 CCAAGAAGAAGTACGCTCTCATCCCTGACCGCTTCTCCTCCCTCGACCAGGTATCAAAAG 500 Query 527 CTCTAAGAGAAGCTGGTCTTGAATCATCCAATCTCATTCTCGGAGTTGATTTCACAAAGA 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 501 CTCTAAGAGAAGCTGGTCTTGAATCATCCAATCTCATTCTCGGAGTTGATTTCACAAAGA 560 Query 587 GCAACGAGTGGACTGGGAAAACTTCTTTCGATGGAAAATGTCTGCACGCGCTCGGCGAAA 646 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 561 GCAACGAGTGGACTGGGAAAACTTCTTTCGATGGAAAATGTCTGCACGCCCTCGGCGAAA 620 Query 647 CTTCGAATCCATATGAAAAGGCGATTTTTGTAATCGGCCAAACGTTGGCTCCTTTTGATG 706 || |||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 621 CTCCGAATCCATATGAAAAGGCGATTTTTGTAATCGGCCAAACGTTGGCTCCTTTCGACG 680 Query 707 AAGACAATCTCATCCCTTGTTTCGGCTTTGGCGATTCAACAACTCATGACGAGGAAGTGT 766 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 681 AAGATAATCTCATCCCTTGTTTCGGCTTTGGCGATTCAACAACTCACGACGAGGAAGTGT 740 Query 767 TCGGTTTCCATAGCGACAATTCTCCATGTCATGGCTTCGAAGAGGTCTTAGCATGTTACA 826 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 741 TCGGTTTCCATAGCGACAATTCTCCATGTCATGGCTTCGAAGAGGTCTTAGCATGTTACA 800 Query 827 AGAGAATTGCACCCAACTTGCGTCTATCAGGGCCAACGTCGTATGGACCGCTCATCGATG 886 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 801 GGAGAATTGCACCCAACTTGCGTCTATCAGGGCCAACGTCGTATGGACCGCTCATCGATG 860 Query 887 CTGCTG-TCGACATTGTGGAGAAGAACAACGGACAATTCCATGTTCTGGTGATTGTTGCA 945 |||| | | |||||||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 861 CTGC-GATTGACATTGTCGAGAAGAACAACGGACAATTCCATGTTCTGGTGATCGTCGCA 919 Query 946 GATGGACAGGTAACGAGAGGTACGGATATGGCCGAGGGAGAACTCAGTCAACAAGAGAAA 1005 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 920 GATGGACAGGTAACGAGAGGTACGGATATGGCCGAGGGAGAACTCAGTCAACAAGAGAAA 979 Query 1006 ACAACCATCGACGCGATTGTAAATGCAAGCTCGTATGCTTTGTCGATTGTTTTAGTCGGT 1065 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 980 TCAACCATCGACGCCATTGTAAATGCAAGCTCGTATGCTTTGTCGATTGTTTTAGTCGGT 1039 Query 1066 GTTGGAGACGGACCATGGGAAGACATGAGGAAGTTCGATGATAAGATCCCTAAGCGTGAA 1125 ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1040 GTTGGAGACGGGCCATGGGAAGACATGAGGAAGTTTGATGACAAGATCCCTAAGCGTGAA 1099 Query 1126 TTCGACAACTTTCAGTTTGTGAATTTCACAGAGATTATGACGAGAAACTCACCAGAGTCT 1185 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1100 TTCGACAACTTTCAGTTTGTGAATTTCACAGAGATTATGACCAGAAACTCACCAGAGTCT 1159 Query 1186 GCCAAAGAAACTGCTTTTGCTCTAGCTGCTCTAATGGAGATTCCCTTTCAGTATCAAGCA 1245 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1160 GCCAAAGAAACTGCCTTTGCTCTTGCTGCTCTAATGGAGATTCCCTTTCAGTATCAAGCA 1219 Query 1246 GCCATCGAACTCCGCTTACTCGGGAAGCAGACGGGCTTAGCGAAGACAATAGTTCCGAGG 1305 |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| Sbjct 1220 GCCATCGAACTCCGCTTACTCGGGAAACAGACGGGCACAGCTAAGACAATAGTTCCGAGG 1279 Query 1306 CCACCACCAATTCCGTACACACCTCCAACTAATGCTGAACTACCATCAACTGCATCACCT 1365 |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1280 CCACCACCAACTCCATACACGCCTCCAACTAATGCTGAACTACCATCAACTGCATCACCT 1339 Query 1366 GCATCACCTGAACAAACCCAGAGTTGCCCGATTTGTCTGACTAACCGAAAAGACGTGGCT 1425 | | || || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1340 G-A--AC---AA-A--CCCAGAGTTGCCCGATTTGTCTGACTAACCGAAAAGACGTGGCT 1390 Query 1426 TTCAGCTGTGGCCACATGACTTGTGGAGATTGCGGATCCAAAATATCAAATTGCCCGATC 1485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1391 TTCAGCTGTGGCCACATGACTTGTGGAGATTGCGGATCCAAAATATCAAATTGCCCGATC 1450 Query 1486 TGTCGAGTAAGGATCACGAACCGGCTAAAGCTTTACACATGATCAATGGCCACGAA-Ctt 1544 || |||||| ||||||||| ||| |||| ||||||||| ||||||||| |||| || ||| Sbjct 1451 TGCCGAGTACGGATCACGAGCCGCCTAAGGCTTTACACGTGATCAATGCCCACAAAACTT 1510 Query 1545 tttttCTGACCACGGCTTTACACGTGATCAATGCC-A-A--C--A-AA-CTTTATCTCTG 1596 ||| |||||||||||||||||||||||||||||| | | | | || |||||| |||| Sbjct 1511 TTTC-CTGACCACGGCTTTACACGTGATCAATGCCGACATGCCGAGAAACTTTATTTCTG 1569 Query 1597 CACATAACAAATCGCTTGCACATAG---CCATCTCCTTTGTAGAATCTACAATTTGGTTT 1653 ||||||||||| ||||||| ||| || |||||||||||||||||||| |||||||| Sbjct 1570 CACATAACAAAAGGCTTGCATATACTATCCTTCTCCTTTGTAGAATCTACAGTTTGGTTT 1629 Query 1654 GCCAAGTGTTTCTGACAATGTTCCACAATCAGCGTGTACCATGTAATTCTGTATGTACTG 1713 ||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||| Sbjct 1630 GCCAAGTGTTTCTGAGAATGTTCCACAATCAGCATGTACCATGTAATTCCGTATCTACTA 1689 Query 1714 TAAAACATTAACTTTGCAAACAAGAATGAAGAAGCAATG 1752 ||||||| ||||||||||||||||||||||||||||||| Sbjct 1690 TAAAACAGTAACTTTGCAAACAAGAATGAAGAAGCAATG 1728 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68333899530 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5