BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79430.2
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477109 jgi|Araly1|477109|fgenesh2_kg.2__2239__AT1G79430.2 2268 0.0
> Ahg477109 jgi|Araly1|477109|fgenesh2_kg.2__2239__AT1G79430.2
Length=1411
Score = 2268 bits (1228), Expect = 0.0
Identities = 1375/1441 (95%), Gaps = 30/1441 (2%)
Strand=Plus/Plus
Query 1 TTGCATCACATTCGTTTCTTGAATCCCCTCTTTCagagagagaaagagagtcagagagag 60
|||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||
Sbjct 1 TTGCATCACATTCGTTTCTTGAATTCCCTCTTTCAGAGAGAGTGAGAGAGAGATAGAGAG 60
Query 61 agagagagagaATGTTCCATGCTAAGAAACCTTCAAGTATGAATGGTTCATATGAGAACA 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGAGGGAGAATGTTCCATGCTAAGAAACCTTCAAGTATGAATGGTTCATATGAGAACA 120
Query 121 GAGCTATGTGCGTTCAAGGCGATTCAGGCCTTGTCCTCACCACCGACCCTAAACCGCGTT 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GAGCTATGTGCGTTCAAGGCGATTCAGGCCTCGTCCTCACCACCGACCCTAAACCGCGTT 180
Query 181 TGCGTTGGACCGTCGAACTCCACGAGCGTTTTGTGGACGCCGTCGCTCAGCTCGGCGGCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCGTTGGACCGTCGAACTCCACGAGCGTTTTGTGGACGCCGTCGCTCAGCTCGGCGGCC 240
Query 241 CCGACAAAGCGACCCCAAAGACGATTATGAGAGTTATGGGTGTGAAGGGTCTTACTCTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGACAAAGCGACCCCAAAGACGATTATGAGAGTTATGGGTGTGAAGGGTCTTACTCTTT 300
Query 301 ACCACCTAAAGAGCCATCTTCAGAAATTCAGGCTTGGAAAGCAGCCGCACAAGGAGTACG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCACCTAAAGAGCCATCTTCAGAAATTCAGGCTTGGAAAGCAGCCGCACAAGGAGTACG 360
Query 361 GAGATCACTCCACAAAGGAAGGTTCAAGAGCTTCTGCCATGGATATTCAGCGCAACGTAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGATCACTCCACAAAGGAAGGTTCAAGAGCTTCTGCCATGGATATTCAGCGCAACGTAG 420
Query 421 CTTCTTCTTCTGGCATGATGAGTCGCAACATGAATGAGATGCAAATGGAAGTGCAGAGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCTTCTTCTGGCATGATGAGTCGCAACATGAATGAGATGCAAATGGAAGTGCAGAGAA 480
Query 481 GGTTGCATGAACAGCTAGAGGTGCAAAGACATCTGCAACTGAGGATTGAAGCACAAGGAA 540
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 GATTGCACGAACAGCTAGAGGTGCAGAGACATCTGCAACTGAGGATTGAAGCACAAGGAA 540
Query 541 AGTACATGCAATCTATCTTGGAGAGAGCTTGCCAAACCCTAGCCGGTGAGAACATGGCAG 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTACATGCAATCTATATTGGAGAGAGCTTGCCAAACCCTAGCCGGTGAGAACATGGCAG 600
Query 601 CCGCCACCGCAGCAGCCGCCGTCGGAGGAGGATACAAGGGTAATCTGGGAAGTTCGAGTC 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 CCGCCACCGCAGCAGCCGCCGTCGGAGGAGGATACAAGGGTAATTTGGGAAGTTCGAGTC 660
Query 661 TTTCAGCAGCGGTGGGCCCACCTCCTCATCCTCTTAGTTTCCCGCCGTTTCAAGACCTAA 720
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 TTTCAGGAGCGGTGGGCCCACCTCCTCATCCTCTTAGTTTCCCGCCGTTTCAAGATCTAA 720
Query 721 ACATCTATGGAAACACAACCGACCAAGTCCTCGACCATCACAACTTCCATCATCAAAACA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACATCTATGGAAACACAACCGACCAAGTCCTCGACCATCACAACTTCCATCATCAAAACA 780
Query 781 TAGAGAACCATTTCACGGGTAACAATGCTGCAGACACCAACATTTACTTGGGGAAGAAGC 840
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TAGAGAACCATTTCACGGCCAACAATGCTGCAGACACCAACATTTACTTGGGGAAGAAGC 840
Query 841 GACCTAATCCTAATTTTGGTAACGATGTAAGGAAAGGACTATTGATGTGGTCTGATCAAG 900
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 841 GACCTAATCCTAATTTTGGTAACGATTTAAGGAAAGGACTATTGATGTGGTCAGATCAAG 900
Query 901 ATCACGATCTTTCCGCAAACCAATCGATCGATGATGAGCATAGAATTCAGATACAGATGG 960
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 ATCACGATCTTGCCGCAAACCAATCGATCGATGATGAGCATCGAATTCAGATACAGATGG 960
Query 961 CTACACATGTCTCCACGGATTTGGATTCTTTGTCGGAGATCTACGAAAGGAAATCAGGTT 1020
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCACACATGTCTCCACGGATTTGGATTCTTTGTCGGAGATCTACGAAAGGAAATCAGGTC 1020
Query 1021 TATCAGGTGATGAAGGGAATAATGGTGGGAAATTACTGGAAAGGCCATCGCCTAGGAGAT 1080
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1021 TATCAGGTGATGAAGGGAATAATGGTGGGAAATTACTAGAAAGGCCATCGCCTCGGAGAT 1080
Query 1081 CACCATTGAGTCCTATGATGAACCCTAATGGTGGATTAATACAAGGAAGAAACTCGCCAT 1140
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CACCATTAAGTCCTATGATGAACCCTAATGGTGGATTAATACAAGGAAGAAACTCGCCAT 1140
Query 1141 TTGGGTGATACAATTTATTAATTTTTATCTATGAGTGATGCATGGGAATGTAAGAACGAG 1200
||||||||| |||| |||||||||||| ||||||||||||| || |||||||||||
Sbjct 1141 TTGGGTGATCCAATA-ATTAATTTTTAT----GAGTGATGCATGGTAACGTAAGAACGAG 1195
Query 1201 ATATATATGTTTTGTCATTGTGAGTTTGACGTAGGGTTTAGAGATGAGacaaaacaaaac 1260
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1196 ATATATATGTTTTGTCATTGTGAGTTTGACGTAGGTTTTAGAGATGAGACAAAACAAAAC 1255
Query 1261 aaaacaaaaaaaaataaaaaaTATATAAGCTTTGTTATGTTTACCGGATTAGTTTTGCTC 1320
|||| || || | | |||||||||||| | ||||||||||||||||
Sbjct 1256 AAAA----------TA-----TA-A-A--CTTTGTTATGTT-ATCGGATTAGTTTTGCTC 1295
Query 1321 GTGTTTTATAATCTGTACGGAAACTATATATTATTGCTGTTCTTATAATATTTTAGGATC 1380
|||||||| | |||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 1296 GTGTTTTA-A-TCTGTACGGAAACTATAT-T-ATTGCTGTTCTTATAATATTT-AGGATC 1350
Query 1381 TATATATTTTGTACTTATTCGTTACTTATTTCTTCTAGTCAACTGTTTGATGATTGATCT 1440
||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 1351 TATATATTTAGTACTTATTCGTTACTTATTTCGTCTAGTGAATTGTTTGATGATTGATCT 1410
Query 1441 T 1441
|
Sbjct 1411 T 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5