BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79510.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477119 jgi|Araly1|477119|fgenesh2_kg.2__2249__AT1G79510.1 1773 0.0
Ahg497547 jgi|Araly1|497547|fgenesh2_kg.891__1__AT1G79510.1 1367 0.0
> Ahg477119 jgi|Araly1|477119|fgenesh2_kg.2__2249__AT1G79510.1
Length=1236
Score = 1773 bits (960), Expect = 0.0
Identities = 1169/1262 (93%), Gaps = 45/1262 (4%)
Strand=Plus/Plus
Query 1 AAAAAACGAGCAGCTGTTTATCTTCCAACAAAGCTTCTTCGTGCATCTTCGCTCTTCTCA 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAAAAACGAACAGCTGTTTATCTTCCAACAAAGCTTCTTCGGGCATCTTCGCTCTTCTCA 60
Query 61 ACTCGTCATCCTCTCCCTCTGATTCTCTTAAGTCGCCTTGAAAAATTAAGACAAAACAAC 120
|||| || |||||||||||||| | ||| |||||||||||||||||| ||
Sbjct 61 ACTCATCCTCCTCTCCCTCTGA---T-TTACTTCGCCTTGAAAAATTAAG--------AC 108
Query 121 AACAAAAGAACAAGAGAAGCTCTAAAATCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 180
|| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 109 AAGAGAA-AACAAGAGAAGCTCTAAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 167
Query 181 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGAGAAACCCATTTCCAACCA 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 168 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGACAAACCCATTTCCAGCCA 227
Query 241 AGCTTTatcatcatcatcatcatcG------TCCAATAGCTACGAGTTTGAAGAAGATAG 294
||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 228 AGCTTTATCATCATCATCATCATCGTCTTCTTCCAATAGCTACGAGTTTGACGAAGATAC 287
Query 295 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 347
Query 355 TAAGACCAAACCAAGTGCGCAGGATAAGTACCAGCACGGCAGCAAAGATGACTTCTACAT 414
|||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 348 TAAGACCAAACCGAGTGCGCAGGATAAGTACCAGCAC-G--GCAAAGATGACTTCTACAT 404
Query 415 CAATCTCGGTTTAGCTGTACGTACCCTTCGCGAAGATTTGCCTCTCCTCTTCACCAAAGA 474
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 405 CAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTTCTCTTCACCAAAGA 464
Query 475 TCTCAATTACGACATTTACAGGGATGATATAACATTAGTGGATCCAATGAACACGTTCTC 534
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 465 TCTCAATTACGACATTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACATTCTC 524
Query 535 TGGGATTGACAACTACAAATTGATCTTCTGGGCACTTAGATTTCATGGCAAGATTCTCTT 594
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 525 TGGGATTGACAAGTACAAATTGATCTTCTGGGCACTCAGATTTCATGGCAAGATTCTCTT 584
Query 595 CAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCAT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCAT 644
Query 655 CAGGTGGAATCTTAAAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGAGAGTTTCAGGG 714
||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 645 CAGGTGGAATCTTAAAGGTGTACCTCCAGTTCCATGGGAGGCAAAGGGTGAGTTTCAGGG 704
Query 715 TACTTCTCGCTATAAACTCGACCGAAATGGCAAAATCTATGAGCATAAGGTCGATAACTT 774
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 705 TACTTCTCGCTATAAACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTCGATAACTT 764
Query 775 GGCCTTCAACTTCCCTCACCAGCTCAAACCTGCCACTTCTGTTTTGGATATGGTCACCGC 834
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 765 GGCCTTCAACTTCCCTCACCAGCTCAAACCTGCAACTTCTGTTTTGGATTTGGTCACTGC 824
Query 835 TTGCCCTGCAAGTCCCAATCCAACTTTCATGTTTGGCGCCATGGATTCATACTCATCTTC 894
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTGCCCTGCAAGCCCCAATCCAACTTTCATGTTTGGCGCCATGGATTCATACTCATCTTC 884
Query 895 TTGGATTGAGTTCTACAAAGCAGTGCAAAGGACACTAGACAAGCAAGAAGAGCAAATGCT 954
|||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||
Sbjct 885 TTGGATTGAGTTCTACAAAGCAGTGCAAAGGACATTGGACAAGCAGGAAGAGCAGATGCT 944
Query 955 TGTGCAAGACCATTTCGTCCCATGCTCATAATGCCATTAGGTCA-CACTCAGGTGtatat 1013
||||||||||||||||| |||||||||||| |||| || || || |||||||||||||||
Sbjct 945 TGTGCAAGACCATTTCGCCCCATGCTCATAGTGCCGTTGGG-CAACACTCAGGTGTATAT 1003
Query 1014 atatataCTGTTACATTGAAGATACAATACATATATCTATGTGTGCAGGCATATGCATAT 1073
||||| ||||||||||| ||||| | || | | || ||||||||| ||||||||| ||
Sbjct 1004 ATATA--CTGTTACATTGCAGATA-A-TATA-A-AT--ATGTGTGCAAGCATATGCAGAT 1055
Query 1074 GAGTAGATGTGGTTGACTTAG------A--TATCAAAGAGGGTAGGGAACCAAGAATACT 1125
|||||| |||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 1056 GAGTAGTTGTGGTTGACTTAGGTTTTCAGATATCAAAGAGGGTAGGGAACCAATAATACT 1115
Query 1126 CATGAGCTTGTACAACTTGCCTATTGAATGTAAACAGAATTCCTTACAGTTGTTTTGTTA 1185
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1116 CATGAGCTTGTACAACTTGCCTATTGAATGTAAACAGAATTCATTACAGTTGTTTTGTTA 1175
Query 1186 TGTAAAACACATTGATGAT--TT-GTCTTTACGATCAAGC-GAAATTATATCCCTTGAAA 1241
| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||||||
Sbjct 1176 TATAAAACACATTGATGATGATTTGTCTTTACGATCAAGCAGAA-TTATATCCCTTGAAA 1234
Query 1242 CC 1243
||
Sbjct 1235 CC 1236
> Ahg497547 jgi|Araly1|497547|fgenesh2_kg.891__1__AT1G79510.1
Length=885
Score = 1367 bits (740), Expect = 0.0
Identities = 851/901 (94%), Gaps = 22/901 (2%)
Strand=Plus/Plus
Query 1 AAAAAACGAGCAGCTGTTTATCTTCCAACAAAGCTTCTTCGTGCATCTTCGCTCTTCTCA 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAAAAACGAACAGCTGTTTATCTTCCAACAAAGCTTCTTCGGGCATCTTCGCTCTTCTCA 60
Query 61 ACTCGTCATCCTCTCCCTCTGATTCTCTTAAGTCGCCTTGAAAAATTAAGACAAAACAAC 120
|||| || |||||||||||||| | ||| |||||||||||||||||| ||
Sbjct 61 ACTCATCCTCCTCTCCCTCTGA---T-TTACTTCGCCTTGAAAAATTAAG--------AC 108
Query 121 AACAAAAGAACAAGAGAAGCTCTAAAATCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 180
|| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 109 AAGAGAA-AACAAGAGAAGCTCTAAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 167
Query 181 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGAGAAACCCATTTCCAACCA 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 168 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGACAAACCCATTTCCAGCCA 227
Query 241 AGCTTTatcatcatcatcatcatcGTC--C----AATAGCTACGAGTTTGAAGAAGATAG 294
||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 228 AGCTTTATCATCATCATCATCATCGTCTTCTTCCAATAGCTACGAGTTTGACGAAGATAC 287
Query 295 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 347
Query 355 TAAGACCAAACCAAGTGCGCAGGATAAGTACCAGCACGGCAGCAAAGATGACTTCTACAT 414
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 348 TAAGACCAAACCGAGTGCGCAGGATAAGTACCAGCACGGCA--AA-GATGACTTCTACAT 404
Query 415 CAATCTCGGTTTAGCTGTACGTACCCTTCGCGAAGATTTGCCTCTCCTCTTCACCAAAGA 474
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 405 CAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTTCTCTTCACCAAAGA 464
Query 475 TCTCAATTACGACATTTACAGGGATGATATAACATTAGTGGATCCAATGAACACGTTCTC 534
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 465 TCTCAATTACGACATTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACATTCTC 524
Query 535 TGGGATTGACAACTACAAATTGATCTTCTGGGCACTTAGATTTCATGGCAAGATTCTCTT 594
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 525 TGGGATTGACAAGTACAAATTGATCTTCTGGGCACTCAGATTTCATGGCAAGATTCTCTT 584
Query 595 CAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCAT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCAT 644
Query 655 CAGGTGGAATCTTAAAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGAGAGTTTCAGGG 714
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 645 CAGGTGGAATCTTAAAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGTGAGTTTCAGGG 704
Query 715 TACTTCTCGCTATAAACTCGACCGAAATGGCAAAATCTATGAGCATAAGGTCGATAACTT 774
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 705 TACTTCTCGCTATAAACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTCGATAACTT 764
Query 775 GGCCTTCAACTTCCCTCACCAGCTCAAACCTGCCACTTCTGTTTTGGATATGGTCACCGC 834
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 765 GGCCTTCAACTTCCCTCACCAGCTCAAACCTGCCACTTCCGTTTTGGATTTGGTCACTGC 824
Query 835 TTGCCCTGCAAGTCCCAATCCAACTTTCATGTTTGGCGCCATGGATTCATACTCATCTTC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTGCCCTGCAAGTCCCAATCCAACTTTCATGTTTGGCGCCATGGATTCATACTCATCTTC 884
Query 895 T 895
|
Sbjct 885 T 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5