BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79520.2
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477120 jgi|Araly1|477120|fgenesh2_kg.2__2250__AT1G79520.1 1757 0.0
> Ahg477120 jgi|Araly1|477120|fgenesh2_kg.2__2250__AT1G79520.1
Length=1560
Score = 1757 bits (951), Expect = 0.0
Identities = 1047/1092 (96%), Gaps = 12/1092 (1%)
Strand=Plus/Plus
Query 330 AAAAGGAACGCAAAGTCTCAGAGTACTACAAACAGCAAGAGAAGCTTCTGGAGGGTTTCA 389
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 478 AAAAGGAACGCAAAGTCTCTGAGTACTACAAACAGCAAGAGAAGCTCCTGGAGGGTTTCA 537
Query 390 ATGAGATGGAGACAATTAACGAAACTGGTTTTGTATCTGGAGCTCCAACTGAGGAAGAAC 449
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGAGATGGAGTCAATTAACGAGACTGGTTTTGTATCTGGAGCTCCAACTGAGGAAGAAC 597
Query 450 TGAAGAAGCTTGCAAAGAGCGAGAGGCTTGCAGTTCACATCTCAAACGCAGCAAACCTTG 509
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 598 TGAAGAAGCTTGCAAAGAGCGAGAGGCTTGCTGTTCACATCTCAAACGCAGCAAACCTTG 657
Query 510 TGCTTTTTGTAGCAAAAGTTTATGCTTCTGTGGAGAGTAGGTCTATGGCTGTCATTGCTT 569
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 658 TGCTTTTTGTAGCAAAGGTTTATGCTTCTGTGGAGAGTAGATCTATGGCTGTGATTGCTT 717
Query 570 CCACTTTGGACTCTCTCTTAGATCTCTTGTCTGGATTTATTCTATGGTTTACTGCTAATG 629
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 718 CCACTTTGGACTCTCTCTTAGATCTCTTGTCTGGATTTATTCTATGGTTTACCGCTAATG 777
Query 630 CCATGAGAACACCTAACAATTTTCGCTATCCAATTGGAAAACGACGGATGCAACCTGTGG 689
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CCATGAGAACACCAAACAATTTTCGCTATCCAATTGGAAAACGACGGATGCAACCTGTGG 837
Query 690 GAATCATTGTGTTTGCATCTGTGATGGCAACTCTTGGACTACAAGTGATACTAGAGTCAA 749
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAATCATTGTGTTTGCATCCGTGATGGCAACTCTTGGACTACAAGTGATACTAGAGTCAA 897
Query 750 CTAGGCTACTTGTTTCCAAGAATGGTTCTCATATGAGTAGCACCGAGGAAAAATGGATGA 809
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 898 CCAGGCTACTTGTTTCCAAGAAGGGTTCTCATATGAGTAGCACTGAGGAAAAATGGATGA 957
Query 810 TTGGAATAATGGCTTCAGCTACAGTCGTCAAGTTTCTGCTCATGCTTTACTGCAGGAGTT 869
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 TTGGAATAATGGCTTCTGCTACAGTCGTCAAGTTTCTGCTCATGCTTTATTGCAGGAGTT 1017
Query 870 TCCAGAACGAAATTGTCAGGGCCTATGCACAAGATCACCTCTTTGATGTTATCACCAATT 929
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 TCCAGAACGAAATTGTTAGGGCCTATGCACAAGATCACCTCTTTGATGTTATCACCAACT 1077
Query 930 CAGTCGGTTTAGCAACCGCTGTTTTAGCTGTAAAATTCTACTGGTGGATTGATCCCTCTG 989
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CAGTCGGTTTAGCAACAGCTGTTTTAGCTGTAAAATTCTACTGGTGGATTGATCCCTCTG 1137
Query 990 GGGCTATACTAATTGCCCTGTATACAATCAGCACATGGGCAAGAACAGTTCTAGAGAATG 1049
|||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1138 GGGCTATATTAATTGCTCTGTACACAATCAGCACATGGGCAAGAACGGTTCTAGAGAATG 1197
Query 1050 TCCATTCACTGATAGGACGCTCAGCACCACCAGATTTCTTGGCGAAACTAACGTTCTTGA 1109
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1198 TCCATTCACTGATAGGACGTTCAGCACCACCGGATTTCTTGGCTAAACTAACGTTCTTGA 1257
Query 1110 TTTGGAACCATCACGAGAAGATAAAACACATAGACACAGTGAGAGCCTACACGTTTGGGT 1169
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1258 TATGGAACCATCACGAGAAGATAAAACACATTGACACAGTGAGAGCCTACACGTTTGGGT 1317
Query 1170 CACACTACTTTGTGGAAGTTGACATTGTGTTGCCAGAGGACATGAGGCTGCATGAAGCTC 1229
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1318 CACACTACTTTGTGGAAGTAGACATTGTGTTGCCAGAGAACATGAGGCTGCATGAAGCTC 1377
Query 1230 ACAACATAGGAGAAACTCTTCAGGAGAAGCTGGAGCAACTCTCTGAGGTTGAGAGAGCTT 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ACAACATAGGAGAAACTCTTCAGGAGAAGCTGGAGCAACTCTCTGAGGTTGAGAGAGCTT 1437
Query 1290 TTGTCCATATTGACTTTGAGTTTACTCATCGTCCAGAACACAAATGCAAGGTTTGAATAT 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTGTCCATATTGACTTTGAGTTTACTCATCGTCCAGAACACAAATGCAAGGTTTGAATAT 1497
Query 1350 CACGATAGGTTAATGGATCCAGAGGAAATAAATTAAGCAGG-ATGTCTC--GATTTCTCT 1406
| | |||||||||||||| | | ||||||||||||| | |||| |||||||||
Sbjct 1498 CCCAATAGGTTAATGGAT--A-A-----TAAATTAAGCAGGTA-GTCTTTTGATTTCTCT 1548
Query 1407 AGAGTTTTTGTT 1418
||||||||||||
Sbjct 1549 AGAGTTTTTGTT 1560
Score = 436 bits (236), Expect = 2e-121
Identities = 274/291 (94%), Gaps = 7/291 (2%)
Strand=Plus/Plus
Query 3 AAAGTTCCAAAAAAGAGGCCAAAAAATAAGCAACAACTTTTGATTCTCTCGTAACTTCCC 62
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAGTTCCAAAAAAGGGGCCAAAAAATAAGCAACAAGTTTTGATTCTCTCGTAACTTCCC 60
Query 63 CCACAAAATCAGCAGAGCGAGAGCGAGAGCGATCGGTTATGGCGGCGACGGAGCATCGCG 122
||| ||||| | ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CCA-AAAAT---C--AGC-AGAGCGAGAGCGATCGGTTATGGCGGCGACGGAGCATCACG 113
Query 123 GCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCAATTGACCAAGACGATTCGCCAC 182
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 114 GCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCAATTGACGAAGACGATTCGCCAC 173
Query 183 CATCTTCATGGCGTCTCAGCCTCGACACATTCCGTCTCCCTTCTTCTTCACCGTTATCAT 242
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 174 CATCTTCATGGCGTCTCAGCCTCGACACATTTCGCCTCCCTTCTTCTTCTCCGTTATCAT 233
Query 243 CAGGACGTCACAACGGCCGTACTCGCTTGTCTCGTTATCTCCGGACTCCGA 293
| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CTGGCCGCCACAACGGCCGTACTCGCTTGTCTCGTTATCTCCGGACTCCGA 284
Score = 313 bits (169), Expect = 3e-84
Identities = 185/193 (96%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 101 ATGGCGGCGACGGAGCATCGCGGCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCA 160
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ATGGCGGCGACGGAGCATCACGGCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCA 344
Query 161 ATTGACCAAGACGATTCGCCACCATCTTCATGGCGTCTCAGCCTCGACACATTCCGTCTC 220
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 345 ATTGACGAAGACGATTCGCCACCATCTTCATGGCGTCTCAGCCTCGACACATTTCGCCTC 404
Query 221 CCTTCTTCTTCACCGTTATCATCAGGACGTCACAACGGCCGTACTCGCTTGTCTCGTTAT 280
||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 405 CCTTCTTCTTCTCCGTTATCATCTGGCCGCCACAACGGCCGTACTCGCTTGTCTCGTTAT 464
Query 281 CTCCGGACTCCGA 293
|||||||||||||
Sbjct 465 CTCCGGACTCCGA 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5