BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79550.1 Length=1677 Score E Sequences producing significant alignments: (Bits) Value Ahg477124 jgi|Araly1|477124|fgenesh2_kg.2__2254__AT1G79550.2 2311 0.0 Ahg478641 jgi|Araly1|478641|fgenesh2_kg.3__1342__AT3G12780.1 632 2e-180 > Ahg477124 jgi|Araly1|477124|fgenesh2_kg.2__2254__AT1G79550.2 Length=1545 Score = 2311 bits (1251), Expect = 0.0 Identities = 1372/1430 (96%), Gaps = 10/1430 (1%) Strand=Plus/Plus Query 114 CAGTGTTTTTAGTTTGTTTTACGAAGAATCAACTATGGCGACGAAGAGAAGCGTTGGAAC 173 ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 94 CAGTGTTTTTAATTTGTCTTACGAAGAATCTACTATGGCGACGAAGAGAAGCGTTGGAAC 153 Query 174 TTTGAAGGAAGCGGATCTGAAGGGAAAGAGTGTGTTCGTGAGGGTTGATCTCAACGTTCC 233 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 154 TTTGAAGGAAGCGGATCTGAAAGGAAAGAGTGTGTTCGTGAGGGTTGATCTCAACGTTCC 213 Query 234 TTTGGATGATAACTCTAACATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCAT 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 TTTGGATGATAACTCTAACATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCAT 273 Query 294 CAAGTACTTGATGGGTAATGGATCTAGGGTTGTTCTCTGCAGTCACTTGGGCCGCCCAAA 353 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 274 CAAGTACTTGATGGGTAACGGATCTAGGGTTGTTCTCTGCAGTCACTTGGGCCGCCCAAA 333 Query 354 AGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCCAGATTGTCTGAACTTCTTGG 413 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 334 AGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCGAGATTGTCTGAACTTCTTGG 393 Query 414 TGTTGAGGTTGTAATGGCAAATGACTCTATTGGTGAGGAAGTCCAGAAGTTGGTTGCAGG 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 394 TGTTGAGGTTGTAATGGCAAATGACTCTATTGGTGAGGAAGTCCAGAAGTTGGTTGCAGG 453 Query 474 ACTACCTGAAGGTGGTGTTTTGCTCTTGGAGAATGTGAGGTTCTACGCCGAGGAAGAGAA 533 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 454 ACTACCTGAAGGTGGTGTTTTGCTCTTGGAGAATGTGAGGTTCTACGCTGAAGAAGAGAA 513 Query 534 GAATGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTTTACGTTAATGATGC 593 ||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 514 GAACGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTCTATGTTAATGATGC 573 Query 594 CTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGAGTTGCCAAATTCTTGAAGCC 653 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 574 CTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGTGTTGCCAAATACTTGAAGCC 633 Query 654 TTCAGTTGCTGGTTTCCTCATGCAGAAGGAACTTGATTACCTTGTCGGAGCTGTGGCAAA 713 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 634 TTCAGTTGCTGGTTTCCTCATGCAAAAGGAACTTGATTACCTTGTTGGAGCTGTGGCAAA 693 Query 714 CCCCAAGAAGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATTGGTGT 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 694 CCCCAAGAAGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATTGGTGT 753 Query 774 CATTGAGTCTCTCTTGAACACAGTTGACATCCTCCTGCTCGGTGGAGGTATGATTTTTAC 833 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 754 CATTGAGTCACTCTTGTCCACAGTTGACATCCTCCTGCTCGGTGGAGGTATGATTTTCAC 813 Query 834 TTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACAAGCTTGA 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 814 TTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACAAGCTTGA 873 Query 894 CTTGGCAAAGTCACTCATGGAGAAAG-CAAAGGCCAAAGGTGTCTCTCTCTTGCTCCCAA 952 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 874 CTTGGCAAAGTCACTCATGGA-AAAGGCAAAGGCCAAAGGTGTCTCTCTCTTGCTCCCAA 932 Query 953 CCGATGTGGTTATTGCTGACAAGTTTGCTCCCGATGCTAACAGCAAGATAGTGCCAGCCA 1012 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 933 CCGATGTGGTTATTGCTGACAAGTTTGCTCCAGATGCTAACAGCAAGATAGTGCCAGCCA 992 Query 1013 CTGCCATCCCTGATGGCTGGATGGGTCTAGATATTGGTCCAGACTCCATCAAGACATTCA 1072 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 993 CTGCCATCCCAGATGGCTGGATGGGTCTAGATATTGGTCCAGATTCCATCAAGACATTCA 1052 Query 1073 GCGAAGCTCTGGACACAACCAAAACCATCATCTGGAATGGTCCCATGGGTGTGTTTGAAT 1132 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1053 GCGAAGCTCTGGACACAACCAAAACCATCATCTGGAATGGTCCCATGGGTGTTTTTGAAT 1112 Query 1133 TCGATAAGTTTGCTGCTGGAACTGAGGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAA 1192 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 TCGATAAGTTTGCAGCTGGAACTGAGGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAA 1172 Query 1193 AGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTCGAGAAGGTTGGTT 1252 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct 1173 AGGGAGTAACCACAATCATTGGAGGGGGTGACTCTGTTGCTGCTGTCGAGAAGGTCGGTT 1232 Query 1253 TGGCAGACAAGATGAGCCACATCTCTACCGGAGGCGGTGCTAGTTTGGAGCTTCTTGAGG 1312 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1233 TGGCTGACAAGATGAGTCACATCTCTACCGGAGGTGGTGCTAGTTTGGAGCTTCTTGAGG 1292 Query 1313 GTAAGCCACTTCCAGGAGTCCTCGCTCTCGACGAAGCTTGAAAATCCTCACGTTGGATTT 1372 | |||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||| Sbjct 1293 GGAAGCCACTTCCAGGAGTCCTCGCTCTTGATGAAGCTTGAGAATCCTCACTTTGGATTT 1352 Query 1373 C-ATCGCTATTTTGTGTTGTTATATGTATAACAAGTCGTCTGGTTATCTTGTGACCAGAC 1431 ||| || ||||||||||||||||||||||||||| |||||||| ||| ||||||||| Sbjct 1353 TTATCTCTCTTTTGTGTTGTTATATGTATAACAAGTTGTCTGGTTCTCTCATGACCAGAC 1412 Query 1432 GAGCAAGCCATTATT-TA-TCAGCTTGAGATTT-TCGTCTACGGCTCTCtttttat--ga 1486 ||||||||||||||| | |||||||||||||| | |||| ||||||||||||| | || Sbjct 1413 GAGCAAGCCATTATTATTGTCAGCTTGAGATTTCT-GTCTGCGGCTCTCTTTTTTTAAGA 1471 Query 1487 gttttttagtttggagcctttttttAATAATAAGAGATGAAACTCTGATT 1536 |||||| ||||||| ||||||| ||||||| ||||||||||||||||||| Sbjct 1472 GTTTTT-AGTTTGGGGCCTTTTCTTAATAAAAAGAGATGAAACTCTGATT 1520 > Ahg478641 jgi|Araly1|478641|fgenesh2_kg.3__1342__AT3G12780.1 Length=1644 Score = 632 bits (342), Expect = 2e-180 Identities = 886/1146 (77%), Gaps = 48/1146 (4%) Strand=Plus/Plus Query 183 AGCGGATCTGAAGGGAAAG-AGTGTGTTCGTGAGGGTTGATCTCAACGTTCCTTTGGATG 241 ||| ||| ||||||| ||| || || |||||||| | ||||||||| || ||| | |||| Sbjct 327 AGCTGATTTGAAGGGGAAGAAG-GTTTTCGTGAGAGCTGATCTCAATGTACCTCTCGATG 385 Query 242 ATAACTCTA-AC-ATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCATCAAGTA 299 ||||| | | || ||||| || || ||||| || ||||||||| |||| || |||||||| Sbjct 386 ATAAC-C-AGACTATCACTGACGATACCAGAATCCGTGCCGCTATTCCAACGATCAAGTA 443 Query 300 CTTGATGGGTAATGGAT-CTAGGGTTGTTCTCTGCAGTCACT-TGGGCCGCCCAAAAGGT 357 ||||| | ||||| | ||| ||| | |||| || ||| | |||| | ||||| || Sbjct 444 TTTGATCGACAATGG-TGCTAAAGTTATCCTCTCCACTCA-TCTGGGAAGGCCAAAGGGA 501 Query 358 GTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCC-AGATTGTCTGAACTTCTTGGTGT 416 || || || |||| || || |||||||| ||| || | || || ||||||||| | Sbjct 502 GTCACACCAAAGTTTAGTTTGGCTCCTCTTGT-CCCTAGGCTCTCCGAGCTTCTTGGTAT 560 Query 417 TGAGGT--TGTAATGGCAAATGACTCTATTGGT-GAGGAAGTCCAG-AAG-TTGGTTGCA 471 |||||| | || || |||| | ||| ||| | ||||| || ||| ||||| || Sbjct 561 TGAGGTCACG-AA-AGCTGATGATTGTATCGGTCCA-GAAGT--AGAAAGCTTGGTGGCT 615 Query 472 GGACTACCTGAAGGTGGTGTTTTGC-TCTTGGAGAATGTGAGGTTCTACGCCGAGGAAGA 530 || ||||||||||| ||||||| |||| |||||||| ||||| ||| || ||||| Sbjct 616 TCTCTTCCTGAAGGTGGAGTTTTGCTTCTT-GAGAATGTCAGGTTTTACAAGGAAGAAGA 674 Query 531 GAAGAATGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTTTACGTTAATGA 590 |||||| |||||||| ||||| |||||||||||| |||| || || |||| || ||||| Sbjct 675 GAAGAACGATCCTGAGTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAATGA 734 Query 591 TGCCTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGAGTTGCCAAATTCTTGAA 650 ||| ||||||||||||||||||||||||||||| || || ||||| | || |||||||| Sbjct 735 TGCTTTCGGAACTGCTCACAGAGCTCATGCTTCTACCGAAGGAGTCACTAAGTTCTTGAA 794 Query 651 GCCTTCAGTTGCTGGTTTCCT-CATGCAGAAGGAACTTGATTACCTTGTCGGAGCTGTGG 709 ||||||||||||||||||||| | |||| ||||| || || || ||||| || ||||| Sbjct 795 GCCTTCAGTTGCTGGTTTCCTTC-TGCAAAAGGAGCTGGACTATCTTGTTGGCGCTGTTT 853 Query 710 CAAACCCCAAGA-AGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATT 768 ||||||| |||| | || ||||| ||||| || || || || ||||| ||| |||||||| Sbjct 854 CAAACCCAAAGAGA-CCATTTGCAGCCATAGTGGGTGGTTCCAAGGTCTCATCAAAGATT 912 Query 769 GGTGTCATTGAGTCTCT-CTTGA-ACACAGTTGACATCCTCCTGCTCGGTGGAGGTATGA 826 || || ||||| || || || || | | || || ||||| || || ||||| || |||| Sbjct 913 GGAGTTATTGAATCGCTTCTGGAGAAAT-GT-GATATCCTTCTTCTTGGTGGTGGAATGA 970 Query 827 TTTTTACTTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACA 886 | ||||| ||||||||||||||||| || ||||| || || |||||||| || || |||| Sbjct 971 TCTTTACATTCTACAAGGCACAAGGTCTTTCAGTTGGTTCGTCCCTTGTTGAAGAAGACA 1030 Query 887 AGCTTGACTTGGCAA-AGTCACTCATGGAGAAAGCAAAGGCCAAAGGTGTCTCTCTCTTG 945 | ||||| ||||| | || |||| | | ||||| ||||||||||| |||||||| ||| Sbjct 1031 AACTTGAATTGGCTACAGA-ACTCCTTGCCAAAGCTAAGGCCAAAGGAGTCTCTCTTTTG 1089 Query 946 CTCCCAACCGATGTGGTTATTGCTGACAAGTTTGCTCCCGATGCTAACAGCAAGATAGTG 1005 | ||||| ||||| || ||||||||||||||||||| ||||| ||||||||||| ||| Sbjct 1090 TTGCCAACAGATGTTGTGGTTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTG 1149 Query 1006 CCAGCCA-CTGCCATCCCTGATGGCTGGATGGG-TCTAGATATTGGTCCAGACTCCATCA 1063 || || | | | ||| || || |||||||| | | || || ||||||||||| |||| Sbjct 1150 CCTGC-ATCAGGCATTGAGGACGGATGGATGGGAT-TGGACATCGGTCCAGACTCTATCA 1207 Query 1064 AGACATTCAGCGAAGCTCTGGACACAAC-CAAAACCA-TCATCTGGAATGGTCCCATGGG 1121 | || |||| |||||||||||||||||| |||| | | | || |||||||| || ||||| Sbjct 1208 AAACTTTCAACGAAGCTCTGGACACAACACAAA-C-AGTTATTTGGAATGGACCTATGGG 1265 Query 1122 TGTGTTT-GA-ATTCGATAAGTTTGCTGCTGGAACTGAGGCCGTAGCAAAGCAGCTTGCA 1179 || ||| || || || |||||||| || ||||| ||||| ||||| || | || ||| Sbjct 1266 AGT-TTTCGAGATG-GAAAAGTTTGCGGCAGGAACAGAGGCGGTAGCGAATAAACTAGCA 1323 Query 1180 GAACTAAGCGGAAAGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTC 1239 || || || ||||| ||||| || || || || |||||||| ||||| || ||||| || Sbjct 1324 GAGCTCAGTGGAAAAGGAGTGACAACGATAATAGGAGGAGGAGACTCGGTGGCTGCAGTG 1383 Query 1240 GAGAAGGTTGGTTTGGCAG-ACAAGATGAGCCACATCTCTACCGGAGGCGGTGCTAGTTT 1298 ||||| || || | |||| | ||||| |||||||| || || || || || || || Sbjct 1384 GAGAAAGTAGGAGTAGCAGGAGTC-ATGAGTCACATCTCCACTGGTGGTGGAGCCAGCTT 1442 Query 1299 GGAGCT 1304 |||||| Sbjct 1443 GGAGCT 1448 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62886994495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5