BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79790.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477291 jgi|Araly1|477291|fgenesh2_kg.2__2421__AT1G79790.1 1103 0.0
> Ahg477291 jgi|Araly1|477291|fgenesh2_kg.2__2421__AT1G79790.1
Length=779
Score = 1103 bits (597), Expect = 0.0
Identities = 743/808 (92%), Gaps = 31/808 (4%)
Strand=Plus/Plus
Query 51 GGCGGCGGCGATGCACACATCGGCGGAATTCATCAATCTGAAACCCAACATGTGGAAGAA 110
|||||||| |||||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 3 GGCGGCGGTGATGCATACATCGACGGAATTCATCAATCTGAAACCCAACATCTGGAAGAA 62
Query 111 GAATCCTGTTCGGGCCTCGGGTTCTTGCTGTCTGGGCAGCAGCAGTGGTGATGAAATCTC 170
| |||| |||||||||||||||||||||||| | | ||| ||||||| |||||
Sbjct 63 G---CCTGATCGGGCCTCGGGTTCTTGCTGTCT--G--G--GCA---GTGATGATATCTC 110
Query 171 TCGGAAAAGGAAGCTTCCGATTCTCCTCTTCGACGTCATGGACACCATCGTCCGTGACCC 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 TCGGAAAAGGAAGCTTCCGATTCTCCTCTTCGACGTCATGGACACCATCGTCCGTGACCC 170
Query 231 CTTTTACCAGGACGTTCCGGCCTTCTTCGGAATGCCAATGAAGCAACTACTAGAGTGCAA 290
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 171 CTTTTACCACGACGTTCCGGCCTTCTTCGGAATGCCAATGAAGGAACTACTAGAGTGCAA 230
Query 291 GCACCCGATGGTCTGGATCGAATTTGAAAAGGGTTTGATTGATGAGGAGGAGCTTGCTAG 350
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 231 GCACCCGATGGCCTGGATCGAATTTGAAAAGGGTTTGATTGACGAGGAGGAGCTTGCAAG 290
Query 351 AAACTTCTTTATAGATGGGAGGGATTTTGATTTGGAAGGGCTTAAGGAGTGCATGAGGTC 410
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 291 AAAGTTCTTTATAGATGGGAGGGACTTTGATTTGGAAGGGCTTAAGGATTGCATGAGGTC 350
Query 411 AGGTTACTCCTACTTAGATGGCATGCAAGAGCTCCTTCAAACTTTGGCAGCTGACGACTT 470
||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 351 AGGATACTCCTACTTAGATGGCATGCAAGAGCTTCTTCACACTTTGGCTGCTGACGACTT 410
Query 471 CGAGATTCATGCTTTCACTAACTATCCCATCTGGTACAACATTATCGAAGACAAGTTAAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CGAGATTCATGCTTTCACTAACTATCCCATCTGGTACAACATTATCGAAGACAAGTTAAA 470
Query 531 GCTTTCTGCCTACTTATCATGGACGTTTTGCTCCTGTATTGCTGGGAAGAGAAAGCCTGA 590
||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 471 GCTCTCTGCCTACTTATCATGGACGTTTTGTTCCTGTATTTCTGGGAAGAGAAAGCCTGA 530
Query 591 TCCAGAGTTCTACCTCGAGGTTGTGGGACACCTCGGAGTTGAACCTTGCGACTGTATATT 650
|||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 531 TCCAGACTTCTATCTCGAGGTTGTGGGACATCTCGGAGTTGAACCTTGCCACTGTATATT 590
Query 651 CATTGATGACAGGCCAACCAACGTCAAGTGTGCTATAGAGATAGGGATGGGTGGGTTATG 710
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 591 CATTGATGACAGGCCAACCAACGTCAAGTGTGCAATAGAGATAGGGATGGGTGGGTTATG 650
Query 711 CTTTGAGAATGCAGATTCGCTCGCTAAGGATCTCTCAGATCTAGGGATCAACGTCTCTGT 770
||| |||||||||| ||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 651 TTTTCAGAATGCAGAGTCGCTCGCTAAGGATCTCTCACATCTAGGGATCGACCTCTCTGT 710
Query 771 ACCCAAATTATGATTGTAATTTCATCACAACGCATCATCTTAAATGTATTGCATCAGAGA 830
|||||| | || || | | || ||||| | | || ||||||||||||||||
Sbjct 711 ACCCAA-T-AT-AT-G-A-TT----------GCATC-T-TGAA-TGTATTGCATCAGAGA 751
Query 831 AATACTCAAAAGAGAAATACATTGTTTT 858
|||||||| |||||||||||||||||||
Sbjct 752 AATACTCATAAGAGAAATACATTGTTTT 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5