BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79850.1 Length=710 Score E Sequences producing significant alignments: (Bits) Value Ahg477281 jgi|Araly1|477281|fgenesh2_kg.2__2411__AT1G79850.1 933 0.0 > Ahg477281 jgi|Araly1|477281|fgenesh2_kg.2__2411__AT1G79850.1 Length=604 Score = 933 bits (505), Expect = 0.0 Identities = 575/608 (95%), Gaps = 7/608 (1%) Strand=Plus/Plus Query 3 TTCATCGATTCGATTCCAAATCGGAAGGATGATAACGTCGTCCCTAACCTCATCTCTGCA 62 |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| Sbjct 1 TTCATCGATTCGATTCCAAATCGG-AGGATG---ACGTCGTCCCTCACCTCATCTCTGCA 56 Query 63 AGCTCTCAAGCTTTCGTCTCCGTTCGCCCATGGCTCCACTCctctctcatctctctctAA 122 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 57 AACTCTCAAGCTTTCGTCTCCGTTCGCCCATGGCTCCACTCCACTCTCATCTCTCTCTAA 116 Query 123 GCCCAATTCCTTCCCGAACCACAGAATGCCCGCTTTAGTTCCGGTCATCAGAGCCATGAA 182 |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 117 GCCCAACTCCTTCCCGAACCATAGAATGCCCGCTTTAGTTCCGGTCATCAGAGCGATGAA 176 Query 183 AACGATGCAGGGGCGCGTGGTGTGCGCAACCAGTGACAAGACTGTGGCGGTGGAGGTGGT 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 AACGATGCAGGGGCGCGTGGTGTGCGCAACCAGTGACAAGACTGTGGCGGTGGAGGTGAC 236 Query 243 GAGGCTGGCTCCCCACCCCAAGTACAAGAGGCGCGTGAGGATGAAGAAGAAGTACCAAGC 302 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 AAGACTGGCTCCCCACCCCAAGTACAAGAGGCGCGTGAGGATGAAGAAGAAGTACCAAGC 296 Query 303 TCACGACCCCGATAATCAGTTCAAGGTTGGCGACGTGGTCAGACTGGAAAAGAGCAGACC 362 ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 297 TCATGACCCCGATAATCAGTTCAAGGTTGGCGACGTTGTCAGGCTGGAAAAGAGCAGACC 356 Query 363 CATCAGTAAGACTAAATCATTTGTGGCGCTTCCTGTCATCGCAAGGGCCGCCAGGAAAGC 422 ||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||| Sbjct 357 CATCAGTAAGACTAAATCATTTGTGGCGCTTCCTGTCGTCCCTAGGGCCGCTGGGAAAGC 416 Query 423 CGAAGCCGGAGGAGATGAACTCCTTGGCCTTCCCTTGGAGTCTCAGCAGCCGGCGTAGAG 482 ||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 417 CGAAGCCGGAGCAGGTGACCTCCTTGGCATTCCCTTGGAGTCTCAGCAGCCGGCGTAGAG 476 Query 483 AAT-GATTGCTCTTTGTTTCTTTTGGTAAAGCCGTCttttttttGCTCTGCTTCTGTTTG 541 | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 477 ACTTGATTGCTCTTTGTTTCTTTTGGTAAAGCTGTCTTTTTTTTGCTCTGCTTCTGTTTG 536 Query 542 TTTGTTGTGTATCCCG--GAACCAGTGTAATTTATGGAATGCTTTTGTGATTTCATTGCT 599 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 537 TTTGTTGTGTATCCCCCCGAACCTGTGTAATTTATGGAATGCTTTTGTGATTTCATTGCT 596 Query 600 TATGCCAT 607 |||||||| Sbjct 597 TATGCCAT 604 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26114198145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5