BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79860.1 Length=1711 Score E Sequences producing significant alignments: (Bits) Value Ahg477280 jgi|Araly1|477280|fgenesh2_kg.2__2410__AT1G79860.1 2608 0.0 Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183 180 4e-44 > Ahg477280 jgi|Araly1|477280|fgenesh2_kg.2__2410__AT1G79860.1 Length=1647 Score = 2608 bits (1412), Expect = 0.0 Identities = 1560/1632 (96%), Gaps = 8/1632 (0%) Strand=Plus/Plus Query 5 TCTCAAGAGAGGCCCATTTGATCctctctctttctctctctctcctctctaattctctAT 64 ||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||| | Sbjct 1 TCTCAAGAGAGGCCCTTTTGAT-C-CTCTCTATCTCTCTCTCTCCTCTCTAATTCTCTCT 58 Query 65 TGCCATCAAGAGACCAGGAATGGTTCGTGCTTCGGAACAAGAACAGGAAACCTATAGGAG 124 ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 59 TGCCATCAAGAAACCAGGAATGGTTCGTGCCTCGGAACAAGAACAGGAAAGCTATAGGAG 118 Query 125 CAGGCTCTTCAATTTCAAATGGAGGAACAACGACAACAATAGTGCTACGAGACACAACAA 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CAGGCTCTTCAATTTCAAATGGAGGAACAACGACAACAATAGTGCTACGAGACACAACAA 178 Query 185 GAGTCTCAGCGTCGAGACCGGTTTAGATGAGGCTGCCACCGGATCCCATGACGCTGAACC 244 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 179 GAGTCTCAGCGTCGAGACCGGTTTAGATGAGGCTGCCACCGGATCTCATGGCGCTGAACC 238 Query 245 ATTGACCATTATTCATCCTAGTCAGGGTCCACCACTTTCAAGATCGGCTGCGGATGAAGC 304 |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 239 GTTGACCATAATTCATCCTAGTCAGGGTCCCCCACTTTCAAGATCAGCTGCGGATGAAGC 298 Query 305 AGTC-CTCGCCGCCCTCGCCGCCTCACAGGCTAGAGAAAGGCAGCTTTTGGCAGACATGG 363 || | || |||||||| |||||| ||||||||||||||| |||||||||||||||||||| Sbjct 299 AG-CACTGGCCGCCCTTGCCGCCGCACAGGCTAGAGAAAAGCAGCTTTTGGCAGACATGG 357 Query 364 AGCAGATGAAAGAGCGCTTCTCCAAGCTGTTGCTGGGAGAGGACAATTCCGGTGGAGGCA 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 AGCAGATGAAAGAGCGCTTCTCCAAGCTGTTGCTGGGAGAGGACAATTCCGGTGGAGGCA 417 Query 424 AAGGAGTATCCTCTGCTCTCGCCCTTTCAAACGCAATCACAAACCTTGCAGCTTCCGTGT 483 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 AAGGAGTATCATCTGCTCTCGCCCTTTCAAACGCAATCACAAACCTTGCAGCTTCCGTGT 477 Query 484 TCGGAGAGCAACGGCGCTTGGAGCCAATGCCTGCAGAAAGAAGAGCAAGATGGAGAAAAG 543 ||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct 478 TCGGAGAGCAACGTCGCTTGGAGCCAATGCCTGCAGAGAGGAGAGCCAGATGGAGAAAAG 537 Query 544 AGATTGATTGGCTTCTCTCCGTGACCGATTACGTGGTTGAGTTTGCTCCATCTCAGCAGA 603 |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 538 AGATCGATTGGCTTCTCTCCGTGACCGAGTACGTTGTTGAGTTTGCTCCATCTCAGCAAA 597 Query 604 AAAATAAAGATGGGACCAATATGGAGATAATGACCACACGCCAACGTACTGACCTCCACA 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 AAAATAAAGATGGGACCAATATGGAGATAATGACCACACGCCAACGTACTGACCTCCACA 657 Query 664 TGAATATCCCCGCATTGAAGAAACTGGACGCCATGCTCATCGATTGTCTAGAAAATTTCA 723 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 658 TGAATATCCCCGCATTGAAGAAATTGGACGCCATGCTCATCGATTGTCTAGAAAATTTCA 717 Query 724 AGGACCAAAGCGAGTTCAGCTATATCTCAAAAGACTCCCCTGACTTAGACGGTAAGAGAA 783 ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| Sbjct 718 AGGACCAAAGCGAGTTCAGCTATGTCTCAAAAGACTCCCCAGACTCAGACGGTAAGAGAA 777 Query 784 ACGACGAAAAATGGTGGATTCCGACCGTCAAAGTT-CCACCAGATGGTCTATCAGAAGCT 842 ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 778 ACGACGACAAATGGTGGATTCCGACCGTCAAAGTTGCC-CCAGATGGTCTATCAGAAGCT 836 Query 843 TCAAGAAGGTTTTTGCAGTACCAGAAAGATTGTGTAAACCAGGTTCTAAAGGCAGCCATG 902 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 837 TCAAGAAGGTTCTTGCAATACCAGAAAGATTGTGTAAACCAGGTTCTAAAGGCAGCCATG 896 Query 903 GCCATAAACGCACAGGTTTTGTTCGAGATGGAGATACCTGAGAGCTACATCGACTCTCTC 962 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 897 GCCATAAACGCACAGGTTTTGTTCGAGATGGAGATACCAGAGAGCTACATCGACTCTCTC 956 Query 963 CCAAAGAACGGGAGGGCGAGTCTCGGGGATCAGATGTACAAGAATATAACGGTGGACTTC 1022 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 CCCAAGAACGGGAGGGCGAGTCTCGGGGATCAGATGTACAAGAATATAACGGTGGACTTC 1016 Query 1023 TTTGACCCGGACCAGTTCCTGAGCAGCATGGACATGTCGTCGGAGCACAAGATCGTGGAC 1082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1017 TTTGACCCGGACCAGTTCCTGAGCAGCATGGACATGTCGTCGGAGCACAAGATCGTCGAC 1076 Query 1083 CTCAAAAACAGAATCGAGGCATCAATCATTATATGGAAACGCAAAATGGTTTATAAAGAC 1142 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 CTCAAAAACAGGATCGAGGCATCAATCATTATATGGAAACGCAAAATGGTTTATAAAGAC 1136 Query 1143 AACAAATCATCGGCACCCTGGGCCTCCGGAGTAAGTCTGGAGAAGCGAGAGGTCTTCGAA 1202 | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1137 AGCAAATCATCGGCACCATGGGCCTCCGGAGTAAGTCTGGAGAAGCGAGAGGTTTTCGAG 1196 Query 1203 GAGCGAGCTGAGACCATTTTGCTCATTCTCAAGCAAAGATACCCCGGGATTTCTCAATCT 1262 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 1197 GAGCGAGCTGAGACCATTTTGCTCATTCTCAAGCAAAGATACCCTGGGATATCTCAGTCG 1256 Query 1263 TCACTCGACATCAGCAAAATCCAGTTCAACGAGGACGTGGGCCAGGCGGTGCTGGAGAGC 1322 ||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| Sbjct 1257 GCACTCGACATCAGCAAAATCCAGTTCAACAAGGACGTGGGTCAAGCGGTGCTGGAGAGC 1316 Query 1323 TACTCGAGAATACTGGAAAGCTTGGCCTACACGGTACTTTCCAGAATCGATGACGTTTTA 1382 ||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct 1317 TACTCGAGAATACTGGAGAGCTTGGCGTACACGGTACTGTCGAGAATCGATGACGTTTTA 1376 Query 1383 GAGGCAGATCGAGCGGGGAACAAGAGGAACACGCC-ATTGGAAGCAGAGGAAGAGACGCT 1441 ||||||||||||||||||| ||||||||||||||| || |||| ||||||| |||||||| Sbjct 1377 GAGGCAGATCGAGCGGGGAGCAAGAGGAACACGCCGAT-GGAATCAGAGGACGAGACGCT 1435 Query 1442 GGTTGGGAGCATGACGCTGTCGGATTTCATGGGATGGGACTTCGATCAGGCCGCGAACGC 1501 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1436 GGTTGGGAGCATGACGCTGTCGGATTTCATGGGATGGGACTTCGATCAGGCCGGGAACGC 1495 Query 1502 CGAATTGGAGTCGAAGAAGGATCTACCGGATGATCCGTTGATAAAGGAGAAGCTAAGCGT 1561 ||| ||||||||||||| ||||||| |||||||||||||| | ||||||||||||||||| Sbjct 1496 CGACTTGGAGTCGAAGAGGGATCTATCGGATGATCCGTTGGTGAAGGAGAAGCTAAGCGT 1555 Query 1562 CGTCACGACCAAGAAGACCTCATACCTCGAAACCCTAGGCGGTGTCAAGAGTCCAACGGC 1621 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1556 CGTCACGACCAAGAAGACATCATACCTCGAAACCCTAGGCGGCGTCAAGAGTCCAACGGC 1615 Query 1622 ACGGCATTGATA 1633 ||||||||||| Sbjct 1616 GCGGCATTGATA 1627 > Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183 Length=1575 Score = 180 bits (97), Expect = 4e-44 Identities = 771/1081 (71%), Gaps = 107/1081 (10%) Strand=Plus/Plus Query 354 GCAGACATGGAGCA-GATGAAAGAGC-GCTTCTCCAAGCT-GTTGCTGGGAGAGGACAAT 410 ||||| |||||| | ||||||||| | | ||| | || | || || ||||| || || Sbjct 250 GCAGATATGGAG-ATGATGAAAGA-CAGGTTCGCGAAATTACTT-CTTGGAGAAGA-TAT 305 Query 411 -TCCGGTGGAGGCAAAGGAGTATCCTCTGCTCTCGCCCTTTCAAACGCAATCACAAACCT 469 |||||||| || ||||| ||||| |||||||| |||||||| || || |||||||| || Sbjct 306 GTCCGGTGGCGGGAAAGGTGTATCTTCTGCTCTGGCCCTTTCCAATGCTATCACAAATCT 365 Query 470 TGCAGCTTCCGTGTTCGGAGAGC-AACGGCGCTTGGAGCCAATGCCTGC-AGAAAGA-AG 526 ||| || || | ||||| || | ||| || | |||| ||||| || ||| ||| | Sbjct 366 TGCTGCGTCTATATTCGGGGAACAAACAAAGC-TACAGCCGATGCC-GCAAGATAGACA- 422 Query 527 AGCAAGATGG-AGAAAAGAGATTGATTGGCTT-CTCTCCGTGACCGATTACGTGGTTGAG 584 || || ||| || |||||||| |||||| || | || ||||||||| || | || ||| Sbjct 423 AGTGAGGTGGAAG-AAAGAGATCGATTGG-TTATTGTCTGTGACCGATCACATTGTCGAG 480 Query 585 TTTGCTCCATCTCAGCAGAA-AAATAAAGATGGGACCAAT--A-TGGAGATAATGACCAC 640 |||| ||| ||||| || || | ||||| ||| | | | ||||| ||| || Sbjct 481 TTTGTTCCTTCTCAACA-AACGAGCAAAGA-AGGA-GTTTGCACT-GAGATTATGGTGAC 536 Query 641 ACGCCAACGTA-CTGACCTCCACATGAATATCCCCGC-ATT-GAAGAAACTGGACGCCAT 697 | | ||| | | ||| || | ||||| || || || || | | ||||| |||||||| Sbjct 537 AAGACAAAG-AGGTGATCTTCTTATGAACATTCCAGCTCTTCG-A-AAACTCGACGCCAT 593 Query 698 GCTCATCGAT-TGTCTAGAAAATTTCA-AGGACCA-AAGCGAGTTCAGCTATATCTCAAA 754 |||||||||| | | || ||||||| |||| || || |||||| | ||| |||| | Sbjct 594 GCTCATCGATACAT-TGGACAATTTCAGAGGA-CACAA-CGAGTTTTGGTATGTCTCTAG 650 Query 755 AGACTCCCCTG-A---C-TTAGACG-GTAA-GA---GA-AACGACGAAAAATGGTGGATT 803 ||| || | | | || || | || || || || |||| ||||||||| | Sbjct 651 AGATTCAGAAGAAGGGCAGCAGGCGAGGAATGATCGGACAA--ACGACAAATGGTGGCTA 708 Query 804 CCGACC-GTCAAAGTTCC-ACCAGATGGTCTATCAG-A--AGCTTC-AAGAAGGTTTTTG 857 || || || |||||||| || || ||| |||| | | ||| || |||| | ||| Sbjct 709 CC-TCCGGTTAAAGTTCCTCCCGGA-GGTTTATCTGAACCAGC-TCGGAGAATG-CTTT- 763 Query 858 CAGTACCAGAAAGATTGTGTAAAC-CAGGTTCTAAAGGCAGCCATGGCCATAAACGCACA 916 | | ||| ||||||| || || ||||||| ||| || || ||||| || || || || Sbjct 764 -ACTTCCAAAAAGATTCAGT-CACACAGGTTCAAAAAGCTGCAATGGCTATCAATGCTCA 821 Query 917 GGTTTTGTTC-GAGATGG-AGATACCTGAGAGCTACATCGACTCTCTCCCAAAGAACGGG 974 || | ||| || |||| | ||||||||||||||||||||||||||||| |||||||| Sbjct 822 AGTCCT-TTCAGAAATGGCA-ATACCTGAGAGCTACATCGACTCTCTCCCTAAGAACGGA 879 Query 975 AGGGCGAGTCTCGGGGAT-CAGATGTACAAGAATATAACGGTGGACTTCTTTGACCCGGA 1033 || || || ||||||||| | ||| ||||||| ||||| | ||| | ||||| ||||| Sbjct 880 AGAGCCAGCCTCGGGGATTC-GATCTACAAGAGCATAACAGAGGAGTGGTTTGATCCGGA 938 Query 1034 CCAGTTCCTGAGC-A-GCATGGACATGTCGTCGGAGCACAA-GATCGT-GGACCTCAAAA 1089 |||||| | | | | | ||||| ||||| | || ||||| | | || ||| | || | Sbjct 939 GCAGTTCTT-ATCGATGT-TGGACTTGTCGACAGAACACAAAG-T-GTTGGATTTGAAGA 994 Query 1090 ACAGAATCGAGGCATCAATCATT-ATATGGAA-ACGCAAAATGGTTTATA-AA-G-ACAA 1144 | || || |||||||| | | | || ||||| | | || | || | | || | ||| Sbjct 995 ATAGGATTGAGGCATCTGT-AGTGATTTGGAAGAGG-AA---GCTTCACACAAAGGACAC 1049 Query 1145 CAAATCATCGGCACCCTGGGCCTCCGGAGTAAGTCT-GGAGAAGCGAGAGGTCTTCGAAG 1203 |||||| || |||| ||| | ||| || || ||||||| |||| | ||||||| Sbjct 1050 CAAATCTTCT------TGGGGCTCAGCAGTTAG-CTTGGAGAAGAGAGAATTGTTCGAAG 1102 Query 1204 AGCGAGCTGAGACCATTTT-GCTCATT-CTCAAGCAAAGATACCCCGGGATTTCTCAATC 1261 || |||| || || || || | || || || || |||| || ||||| || ||||||| Sbjct 1103 AGAGAGCAGAAACAATCTTAG-TC-TTGCTTAAACAAAAATTTCCCGGTCTTCCTCAATC 1160 Query 1262 TTCACTCGACATCAGCAAA-ATCCAGTTCAACGAGGACGT-GGGCCAGGCGGTGCTGGAG 1319 ||| || ||||| | | || || ||||| ||| ||||||| |||| || ||||| ||||| Sbjct 1161 TTCCCTTGACAT-ATCCAAGATTCAGTTTAACAAGGACGTTGGGCAAG-CGGTGTTGGAG 1218 Query 1320 AGCTACTCGAGAATACTGGAAAGCTTGGCCTACACGGT-ACTTTCCAGAATCGATGACGT 1378 || ||||| || ||||| || |||||||| || || || | | || ||||| || || || Sbjct 1219 AGTTACTCTAGGATACTTGAGAGCTTGGCTTATACAGTGA-TGTCAAGAATAGAAGATGT 1277 Query 1379 T 1379 | Sbjct 1278 T 1278 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64182062825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5