BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79900.1 Length=1455 Score E Sequences producing significant alignments: (Bits) Value Ahg927522 jgi|Araly1|927522|scaffold_203083.1 1493 0.0 > Ahg927522 jgi|Araly1|927522|scaffold_203083.1 Length=932 Score = 1493 bits (808), Expect = 0.0 Identities = 892/933 (96%), Gaps = 4/933 (0%) Strand=Plus/Plus Query 319 GTACAATCCCATCCTT-GG-TATGGATTTCTGGCCGGAGTTTATGGCGACCAGCTGGGGA 376 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTACAATCCCATCCTTGGGATATGGATTTCTGGCCGGAGTTTATGGCGACCAGCTGGGGA 60 Query 377 AGAGAGTTCGTCGCCGGTGGTTTCGGTGGCGTCGCCGGCATCATCTCCGGCTACCCCTTG 436 ||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||| Sbjct 61 CGAGAGTTCGTCGCCGGTGGTTTCGGAGGTGTTGCCGGAATCATCTCCGGCTACCCCTTG 120 Query 437 GACACCCTCAGAATTCGCCAGCAACAGAGCTCGAAATCTGGATCTGCCTTCTCCATTCTC 496 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 121 GACACCCTCAGAATTCGCCAGCAACAGAGCTCTAAATCGGGATCTGCCTTCTCCATTCTC 180 Query 497 CGGCGGATGCTCGCCATTGAGGGTCCCTCCTCTCTCTACAGAGGCATGGCTGCGCCTTTG 556 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 181 CGGCGGATGCTCGCCGTTGAGGGTCCCACCTCTCTCTACAGAGGCATGGCTGCGCCTTTG 240 Query 557 GCCTCCGTCACTTTTCAGAATGCTATGGTATTCCAGATATACGCCATATTCTCTCGCTCT 616 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 241 GCCTCCGTCACTTTTCAGAATGCTATGGTATTCCAGATTTACGCCATATTCTCTCGCTCC 300 Query 617 TTTGATTCCTCTGTTCCTCTGGTAGAGCCTCCTTCCTACAGAGGCGTTGCTCTTGGTGGT 676 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 301 TTTGATTCCTCTGTTCCTCTGGAAGAGCCTCCTTCCTACAGAGGCGTTGCTCTTGGAGGT 360 Query 677 GTTGCCACCGGTGCTGTACAGAGCCTCTTGCTCACCCCTGTCGAGCTCATCAAGATTCGT 736 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTGCCACCGGTGCTGTCCAGAGCCTCTTGCTCACCCCTGTCGAGCTCATCAAGATTCGT 420 Query 737 CTCCAGCTTCAGCAGACTAAGTCTGGTCCCATCACCTTGGCCAAGAGCATCCTTAGGAGA 796 ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| Sbjct 421 CTCCAGCTTCAGCAGACCAAGTCTGGTCCCCTCACCTTGGCCAAGAGTATCCTTAGGAGT 480 Query 797 CAGGGCCTTC-AGGGGCTTTACAGAGGCCTCACCATCACCGTGCTCCGAGATGCTCCCGC 855 ||||||| || |||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 481 CAGGGCC-TCAAGGGGCTTTACAAAGGCCTCACCATCACTGTGCTCCGAGATGCTCCCGC 539 Query 856 TCATGGCCTCTACTTCTGGACCTATGAGTACGTCAGAGAAAGGCTTCACCCCGGCTGCAG 915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 540 TCATGGCCTCTACTTCTGGACCTATGAGTACGTCAGAGAAAGGCTTCACCCCGGCTGCCG 599 Query 916 AAAGACCGGACAAGAAAACCTCAGGACCATGCTCGTGGCTGGTGGCCTTGCTGGAGTGGC 975 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 600 AAAGACCGGACAAGAAAACCTCAGGACCATGCTGGTCGCTGGTGGCCTTGCTGGAGTGGC 659 Query 976 CAGCTGGGTCGCTTGTTATCCTCTTGATGTCGTCAAGACCAGACTCCAACAAGGTCATGG 1035 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 660 CAGCTGGGTCGCTTGTTATCCTCTTGATGTCGTCAAGACCAGACTGCAGCAAGGTCATGG 719 Query 1036 GGCTTACGAGGGCATTGCCGATTGTTTTCGCAAGAGCGTCAAACAGGAAGGCTATACGGT 1095 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 720 GGCTTACGAGGGCATTGCCGATTGTTTTCGCAAGAGCGTCAAACAGGAAGGCTATACCGT 779 Query 1096 TCTCTGGCGTGGCCTCGGGACTGCAGTTGCCAGGGCCTTTGTGGTCAACGGTGCTATCTT 1155 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TCTCTGGCGTGGCCTTGGCACTGCAGTTGCCAGGGCCTTTGTGGTCAACGGTGCTATCTT 839 Query 1156 TGCTGCTTATGAGGTAGCCTTGCGGTGTCTATTCAATCAATCGCCATCCCCAGATATTGT 1215 ||||||||||||||| |||||||||||| | |||| ||||| ||||||||| ||| |||| Sbjct 840 TGCTGCTTATGAGGTCGCCTTGCGGTGTTTTTTCACTCAATTGCCATCCCCTGATGTTGT 899 Query 1216 CACAGGAGATTGAGTGAGTAAAGGGCAAAGAAG 1248 || |||||| ||||||||||||||||||||||| Sbjct 900 CAAAGGAGAGTGAGTGAGTAAAGGGCAAAGAAG 932 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54430960105 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5