BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79960.1 Length=885 Score E Sequences producing significant alignments: (Bits) Value Ahg927514 jgi|Araly1|927514|scaffold_203075.1 1299 0.0 > Ahg927514 jgi|Araly1|927514|scaffold_203075.1 Length=916 Score = 1299 bits (703), Expect = 0.0 Identities = 827/886 (93%), Gaps = 11/886 (1%) Strand=Plus/Plus Query 1 ATGCCAAACCCATTGCAGAAATCGCTGCATGGTTACCTGTCAAAGATCAAAAAAGAGACA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 21 ATGCCAAACCCATTGCAGAAATCGCTGCATGGTTACCTGTCAAAGATCAAACGAGAGACA 80 Query 61 GGGAAGCTGCAACTGTCTTCCTC-ACATTCATTCTCATCCTCAAAGAATTGGGTGCTTGG 119 |||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||| Sbjct 81 GGGAAGCTGCAACTGTCTTCGTCGA-ATTCATTCTCATCCTCAAAGAATTGGGTCCTTGG 139 Query 120 TAAGCATCCCAAGAAGCTCTCCTTCTCCTTCAAGCACAGACGACGCAGCAGCAAGACCAG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 TAAGCATCCCAAGAAGCTCTCCTTCTCCTTCAAGCACAGACGACGCAGCAGCAAGACCAG 199 Query 180 ATTCAGCAAAGAAGAACCCGTTTACCACCAGGACTCTGCTCACGCCGCCACCTTGTCCGA 239 |||||||||||| || |||||| |||| |||||||| |||||||||||||||||||| || Sbjct 200 ATTCAGCAAAGACGACCCCGTTCACCAGCAGGACTCCGCTCACGCCGCCACCTTGTCTGA 259 Query 240 CATTGATCGTTTTCTTGAGGAAAACTTCAAATCCCTCTGCATCAGAGACGACCAGGAGGA 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 CATTGATCGTTTTCTTGAGGAAAACTTCAAATCCCTCTGCATCAGAGACGACCAGGAGGA 319 Query 300 TGATCAGCATCAAGCCCGGGTGACCAAAAACAAGGAGAAAAGGGAGTCATCATCAGACGA 359 ||| |||||||| |||| ||||||||||||||||||||||||| || ||||||||||| Sbjct 320 TGA---GCATCAAGTCCGGCTGACCAAAAACAAGGAGAAAAGGGAATCTTCATCAGACGA 376 Query 360 CAGtgatgatgatgatgatgaCGACGACTATCGTCACAGATTCGAGAGGACATGGGGACA 419 |||||||||||| || |||||||||||||||| |||||||||||||||||||||| Sbjct 377 CAGTGATGATGACGA------CGACGACTATCGTCACCGATTCGAGAGGACATGGGGACA 430 Query 420 TGCCGTCTACGACTCCCCGAAACAGCCCCCGGATTTGCTGAGAACAGAGAGGCTATCTCC 479 ||||||||||||||||| |||||||| |||||||||||||| || ||||| |||||||| Sbjct 431 GGCCGTCTACGACTCCCCAAAACAGCCGCCGGATTTGCTGAGGACGGAGAGACTATCTCC 490 Query 480 TCCGCCTGGATCTTCGGAGGGCAGGCCTAGCATGGAAACAACGTCAACATCGTCGGAGAG 539 ||| |||||||| |||||||| ||||||||||||||||| ||||| |||||| ||| || Sbjct 491 TCCTCCTGGATCATCGGAGGGGAGGCCTAGCATGGAAACGACGTCTACATCGGAGGATAG 550 Query 540 GCAATCGAGATCCACCTTGGTGCTGCCGGAGAACTGCATCGCGGTGTTAAGATACACGGA 599 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 551 ACAATCGAGATCCACCTTGGTGCTGCCGGAGAACTGCATCGCAGTGTTAAGATACACGGA 610 Query 600 TGAGCCGCAAGAGGATTTCAGGCAGTCCATGGTGGAGATGATGGAGTCCAAGTTAGGGAT 659 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 611 TGAGCCGCAAGAGGACTTCAGGCTGTCCATGGTGGAGATGATGGAGTCCAAGTTAGGGAT 670 Query 660 GCGGGAAAGCGAAGTGGATTGGGACTTGATGGAAGAGCTACTCTTCTGCTATCTGGATCT 719 || || |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 671 GCCAGACAGCGAAGTGGATTGGGACTTGATGGAGGAGCTACTCTTCTGCTATCTGGATCT 730 Query 720 CAACGACAAGAAGTCACACAAGTTCATACTAAGCGCTTTCGTCGATCTCATCATTGCTCT 779 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 731 CAACGACAAGAAGTCACACAAGTTCATATTAAGCGCTTTCGTTGATCTCATCATCGCTCT 790 Query 780 TCGTGAGAAGGAGAAGAGAATCACCAGGAAAGGTCATGTGAGGTCGCTCAGTACTCGTGC 839 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || Sbjct 791 TCGTGAGAAGGAGAAGAGAATCACCAGGAAAGGCCTTGTGAGGTCGCTCAGTACTCGCGC 850 Query 840 CGCCAGGGACAGGCTTAGGAAGAGGATGATCATGAGTGACAACTAA 885 |||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 851 AGCCAGGGAGAGGCTGAGAAAGAGGATGATCATGAGTGACAACTAA 896 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32785708620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5