BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80030.1 Length=1938 Score E Sequences producing significant alignments: (Bits) Value Ahg927508 jgi|Araly1|927508|scaffold_203069.1 2248 0.0 > Ahg927508 jgi|Araly1|927508|scaffold_203069.1 Length=1520 Score = 2248 bits (1217), Expect = 0.0 Identities = 1420/1515 (94%), Gaps = 25/1515 (2%) Strand=Plus/Plus Query 106 GCTTCTCCCTCCCTCATCCCCTCTTCTCTCTGCTTCGCTGCCGCCGCCGATGGTCC-CCG 164 |||||||||||||||||||||||||||||||||||| ||||||| |||| | | || ||| Sbjct 24 GCTTCTCCCTCCCTCATCCCCTCTTCTCTCTGCTTCCCTGCCGCTGCCGCT-G-CCGCCG 81 Query 165 TTCC-CT-CTCTTC-TAATTTCTCTGCCT-TTTCCGACGGCGGTTCCAATTTCAGGTATC 220 || | || | | ||||| || ||||||||||||| ||||| ||||||||| Sbjct 82 --CCGATGGTCCGCGTTCCCTCTCT-TCTAATTCCGACGGCGGTACCAATCTCAGGTATC 138 Query 221 ACAAGAGCTTCTTGTCGCTTTCATCTTCGTCTTCTTCGTCTACGCCTTATCGAAATCGAC 280 ||||||||||||| | | | ||| || ||||| | | |||||||||||||||||| Sbjct 139 ACAAGAGCTTCTTAT--C---C--CTT--TCATCTTC-T-T-CGCCTTATCGAAATCGAC 186 Query 281 GGGGCCGTTCCCTCGTCGTATTTGCTACTTCCGGAGACTACTACGCCACTCTCGGTGTCT 340 ||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||| Sbjct 187 GGGGCCGTTCCCTCGTCGTGTTTGCTGCTTCCGGAGACTACTATGCTACTCTCGGTGTCC 246 Query 341 CTAAATCTGCCAATAACAAGGAGATTAAAGCTGCTTATCGACGGCTCGCTCGTCAGTATC 400 ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| Sbjct 247 CTAAATCTGCCAATAACAAGGAGATTAAAGCCGCGTATCGACGCCTCGCTCGTCAGTATC 306 Query 401 ATCCCGATGTGAACAAGGAACCCGGAGCAACTGAAAAATTCAAGGAAATCAGTGCTGCCT 460 |||||||||||||||| ||||| || |||||||| || |||||||||||||||||||||| Sbjct 307 ATCCCGATGTGAACAAAGAACCTGGCGCAACTGACAAGTTCAAGGAAATCAGTGCTGCCT 366 Query 461 ATGAGGTGCTATCAGACGAGCAAAAGAGAGCATTATATGATCAATATGGTGAAGCCGGTG 520 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 367 ATGAGGTGCTATCAGATGAGCAAAAGAGAGCATTATATGATCAATATGGTGAAGCCGGAG 426 Query 521 TCAAGAGTACAGTAGGAGGAGCTTCTGGTCCTTACACGTCAAATCCCTTTGACCTTTTCG 580 |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 427 TCAAGAGTACTGTAGGAGGAGCTTCTGGTACTTACACGACAAATCCCTTTGACCTTTTCG 486 Query 581 AGACATTCTTTGGTGCAAGTATGGGTGGATTTCCCGGGATGGACCAAGCTGATTTTGGGA 640 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 487 AGACATTCTTTGGTGCGAGTATGGGTGGATTTCCCGGGGTGGACCAAGCTGATTTTGGGA 546 Query 641 GAACCCGCCGCAGTAGGGTTACCAAAGGTGAAGATTTACGGTATGACATCACCTTAGAAC 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 GAACCCGCCGCAGTAGGGTTACCAAAGGTGAAGATTTACGGTATGACATCACCTTAGAAC 606 Query 701 TTTCGGAGGCTATTTTTGGATCTGAGAAAGAATTTGATCTTACGCATCTGGAGACATGTG 760 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 607 TGTCAGAGGCTATTTTTGGATCTGAGAAAGAATTTGATCTTACGCATCTGGAGACATGCG 666 Query 761 AAGCTTGTGCTGGCACCGGGGCAAAAGCAGGATCCAAGATGAGAATATGCTCCACTTGTG 820 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 667 AAGCTTGTGCTGGCACTGGGGCAAAAGCAGGATCCAAGATGCGAATATGCTCCACTTGTG 726 Query 821 GTGGGCGGGGTCAAGTTATGAGAACTGAGCAAACACCATTTGGCATGTTTTCACAGGTTT 880 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 727 GTGGGCGGGGTCAAGTTATGAGAACTGAGCAAACACCATTTGGGATGTTTTCACAGGTTT 786 Query 881 CTATATGTCCAAACTGTGGTGGAGATGGTGAGGTGATTTCTGAAAATTGCCGGAAATGTT 940 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 787 CTATATGTCCCAACTGTGGTGGAGATGGTGAGGTAATTTCTGAAAATTGCCGGAAATGCT 846 Query 941 CTGGAGAAGGGCGTGTGCGTATaaaaaaaaGCATCAAAGTCAAAATTCCCCCGGGAGTTA 1000 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 847 CTGGAGAAGGACGTGTGCGTATAAAAAAAAGCATCAAAGTCAAAATTCCCCCGGGAGTTA 906 Query 1001 GTGCAGGTAGCATCCTTAGAGTCGCCGGAGAAGGTGATTCTGGTCCCAGAGGTGGCCCTC 1060 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 907 GTGCAGGTAGCATCCTAAGAGTTGCCGGAGAAGGTGATTCTGGTCCCAGAGGTGGCCCTC 966 Query 1061 CAGGAGATTTGTATGTATATCTTGATGTTGAAGATGTCCGGGGAATTGAAAGAGATGGCA 1120 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 967 CAGGAGATTTGTACGTATATCTTGATGTTGAAGATGTCCGGGGAATTCAAAGAGATGGCA 1026 Query 1121 TAAACCTATTATCTACCCTTTCGATCAGTTACCTTGATGCTATACTGGGTGCTGTTGTTA 1180 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1027 TAAACCTTTTATCTACCCTTTCGATCAGTTACCTTGATGCTATACTGGGTGCGGTTGTTA 1086 Query 1181 AGGTGAAAACAGTTGAAGGAGACACTGAACTGCAGATACCTCCAGGTACACAACCTGGTG 1240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1087 AGGTGAAAACAGTTGAAGGAGACACTGAACTGCAGATACCTCCAGGTACACAACCTGGTG 1146 Query 1241 ATGTGCTAGTCCTGGCAAAGAAAGGAGTACCGAAACTGAATAGACCGTCTATCCGCGGTG 1300 ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1147 ATGTGCTGGTCCTGGCAAAGAAAGGAGTACCAAAACTGAATAGACCATCTATCCGCGGTG 1206 Query 1301 ACCACTTGTTTACAGTCAAAGTTTCTGTACCAAATCAAATAAGTGCTGGAGAACGGGAGT 1360 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1207 ACCACTTGTTTACAGTCAAAGTTTCTATACCAAATCAAATAAGTGCTGGAGAACGGGAGT 1266 Query 1361 TGCTGGAGGAACTTGCATCTCTGAAGGACACGTCCAGCAACCGCTCACGAACTCGTGCTA 1420 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1267 TGCTGGAGGAACTTGCATCTCTGAAGGACACGTCCAGCAACCGGTCACGAACTCGTGCTA 1326 Query 1421 AGCCTCAGCAACCCAGTACTCTGAGCACTGCACCCAGTGGCTCAGAAAACAAGAAAGATG 1480 ||||||||||| ||||| ||||||||| |||||||||| ||| |||||||| || ||||| Sbjct 1327 AGCCTCAGCAAACCAGTTCTCTGAGCAGTGCACCCAGTAGCTTAGAAAACAGGACAGATG 1386 Query 1481 AAGTTAAGGAGGAAAATGAAGAACCGGAGCAAGAAAACTACTTGTGGAATAACATCAAAG 1540 ||||| | |||||||||||||| |||||||||||||| |||||||||| |||||||||| Sbjct 1387 AAGTT--G-AGGAAAATGAAGAAGCGGAGCAAGAAAACGACTTGTGGAAAAACATCAAAG 1443 Query 1541 AATTTGCAGGGTCTGTCGCAAATGGAGCTCTAAAATGGCTGAGAGATAACCTCTAGAGAT 1600 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1444 ATTTTGCAGGGTCTGTCGCAAATGGAGCTCTGAAATGGCTGAGAGATAACCTCTAGAGAT 1503 Query 1601 CCATCTTCAACTAAC 1615 ||||||||||||||| Sbjct 1504 CCATCTTCAACTAAC 1518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72828548440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5