BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80130.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477244 jgi|Araly1|477244|fgenesh2_kg.2__2374__AT1G80130.1 1831 0.0
> Ahg477244 jgi|Araly1|477244|fgenesh2_kg.2__2374__AT1G80130.1
Length=1352
Score = 1831 bits (991), Expect = 0.0
Identities = 1258/1381 (91%), Gaps = 42/1381 (3%)
Strand=Plus/Plus
Query 5 ATATATACACTTATCTTTTACAGTCTAAATTTAATTATGCGGCTTACCATTATAT-AAGA 63
||||||||||||||||||||| ||||||| |||| || ||||||||||||||||| ||||
Sbjct 1 ATATATACACTTATCTTTTACTGTCTAAA-TTAACTAGGCGGCTTACCATTATATAAAGA 59
Query 64 CTCTGGTAGACTACTCTCATTATATACATTATAAAGATACTGATGAGTGGTTCTTGTTTA 123
|||| | || ||||||||| | |||||||||| || |||| || |||||||||||||||
Sbjct 60 CTCTAGAAGGCTACTCTCA-T-TATACATTATCTAG-TACTCATAAGTGGTTCTTGTTTA 116
Query 124 ATGGAGTTTTAAATTTAAAAATATTTGGTAACCGAGTGGATCATCATGTTATTGAGAAGC 183
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ATGGAGTTTTTAATTT-AAAATATTTGGTAACCGAGTGGATCATCATGTTATTGAGAAGC 175
Query 184 ACATCTGCTCCGATACTGAACTCGTGGCTTCCACAACACTGCTCGAGAGAATCGTCTCCG 243
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 176 ACATCTGCTCCGATTCTGAACTCGTGGCTTCCACAACACTGCTCCAGAGAATCGTCTCCG 235
Query 244 GAACCGGAGTCACAGCTCTGGCGCCGGTCAACATCATTGTCTCTTTTCTCATCAAAGTCC 303
|| ||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||
Sbjct 236 GAGCCGGAGTCACAGCTCCAGCGCAGGTCAAGATCGTTGTCTCTTTTCTCATCAAAGTCA 295
Query 304 ATAGATGGACACACTGGGGAGCAGCTGCACCAAGCTCTCTCTGACAACAAGGAGATTATT 363
||||||||||||||||||||| | |||| ||||||||||| ||| |||||||| | |
Sbjct 296 ATAGATGGACACACTGGGGAGGTGTTGCATCAAGCTCTCTCCGACCACAAGGAG---AGT 352
Query 364 ATTCTTAAATCAAAAAGCAACGAGCACAGCTACAAAACTCCAACATCAAGCAGGCAACGC 423
||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 353 GTTCTTAAATCAAACAGCAGCGAGCACAGCTATAAAACTCCAACATCAAGCAGGCAACGC 412
Query 424 AGGTCATCTTTAGATGAAACACGCTACACAAAAAAGACTTTGGATCGGTCATCACCTTTC 483
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 413 AGGTCATCTTTAGATGAAACACGCTATACAAAAAAAACTTTGGATCGGTCGTCACCTTTC 472
Query 484 TTAGTGGAGAGGCTCTTCTCGAGCTCTGGACAGGGAGATAAGGCCAGTAGTAATGATCGT 543
||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||
Sbjct 473 TTAGTGGAGAGGCTCTTCTCGAGCTCTGGACTGGGAGACAAGGCCAGTAGTGATGATCGT 532
Query 544 CTGGAGACTCTTGTGAGTGGTGGTGGTGGCGGGATGGGAGGCAGCGGCGGCAATATTTGT 603
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 533 CTGGAGACTCTTGTTAGTGGTGGTGGTGGCGGGATGGGAAGCAGCGGCGGCAAGATTTGT 592
Query 604 AACGGCGGCGGTGGTGTCGGTGGAAGTGGTGTGGACGGCGGTAGGAGTGAGGACGCTACC 663
| ||||||||||| |||||||||||| | ||||||||| |||||||||||||||||
Sbjct 593 -TC--TGGCGGTGGTGTGGGTGGAAGTGGTATTGACGGCGGTGGGAGTGAGGACGCTACC 649
Query 664 GACACGTATTACCGGGAGATGATCGACTCGAATCCAGGAAACTCGCTTTTGACCGGAAAC 723
|| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 650 GATACGTATTACAAGGAGATGATCGACTCGAGTCCAGGAAACTCGCTTTTGACTGGAAAC 709
Query 724 TACGCCAAGTTCTTGAAAGAGGTGAAAGGAGACATGAAAAAAGCAGAAGAGTATTGTGAA 783
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 710 TACGCCAAGTTCTTGAAAGAGGTGAAAGGAGACATGAAGAAAGCAGAAGAGTATTGTGAA 769
Query 784 AGAGCAATTTTGGGGAACACCAACGATGGAAACGTTCTATCTCTCTATGCTGATCTCATT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AGAGCAATTTTGGGGAACACCAACGATGGAAACGTTCTATCTCTCTATGCTGATCTCATT 829
Query 844 TTGCACAACCATCAAGATCGTCAAAGAGCCCACTCTTACTATAAGCAAGCCGTCAAGATG 903
||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 830 TTGCACAACCACCGAGATCGTCAAAGAGCCCACTCTTACTATCAGCAAGCCGTCAAAATG 889
Query 904 TCCCCGGAAGATTGTTATGTGCAAGCTTCATACGCAAGGTTTCTGTGGGATGTGGATGAG 963
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 890 TCCCCGGAAGATTGCTATGTGCAAGCTTCATACGCAAGGTTTCTGTGGGATGTGGAAGAG 949
Query 964 GACGAAGAAGATGAAGCATTAGGAGAAGAAGAAGAG-AACTTGAGTGATGAAACTGGCCA 1022
|||||||| ||||| | ||||||||||||| || ||||||||||||||||||
Sbjct 950 GACGAAGA---TGAAG-----G-AGAAGAAGAAGAGCAAAG-GAGTGATGAAACTGGCCA 999
Query 1023 TGTGCCTCCAACTACCATGTTCCGTGATTTTCCCCAACACACTTCTATTACCGCATCATC 1082
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TGTGCCTCCAACTACCATCTTCCGTGATTTTCCCCAACACACTTCTATTACCGCATCATC 1059
Query 1083 CTAAGACACATAT--GAACACCTTCGTGAATGTTCGTATTTAGGTAAATAACATATATAG 1140
||||||||||||| | |||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 1060 CTAAGACACATATATGTACACCTTCGTGAGTGTTCGCATTTAAATAAATAACATATATAG 1119
Query 1141 AAGCATATTTAATACACATACTCAAATGCAATATGCGTGTATAATATATGTTCAGAATCT 1200
|||||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 1120 AAGCATGTTTAATACACATATTTAAATGCAATATGCGTGTATAATATATGTTAAGAATCT 1179
Query 1201 TTGTATATGTTCTGTAGTCTT--C-----ATAATAAGGGTATGTACTTATATTTGCAGTA 1253
||||||||||||||||||||| | |||||| || |||||||| |||||||||||
Sbjct 1180 TTGTATATGTTCTGTAGTCTTTACTCTTTATAATATGGATATGTACTGCTATTTGCAGTA 1239
Query 1254 TTTATGTGT-CTTTTTGTATTATAAAGTATGAAACTTACCCATGT-CCTATCGAGATAGA 1311
| ||||||| ||||||||||| |||| | ||||||||||| ||| ||||||||||||||
Sbjct 1240 TATATGTGTTCTTTTTGTATTGTAAA-T--GAAACTTACCC-TGTTCCTATCGAGATAGA 1295
Query 1312 CAAAATATTAGGCATTTGTTTGTTaaaaaaaaGTATGATGAAATTGATGATACAGATCGA 1371
|||||||||||||| |||||| | ||| |||||||| |||||||||||||||||||
Sbjct 1296 CAAAATATTAGGCAGATGTTTGCTGAAA----GTATGATGGAATTGATGATACAGATCGA 1351
Query 1372 T 1372
|
Sbjct 1352 T 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5