BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80180.1

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927489 jgi|Araly1|927489|scaffold_203050.1                        638    0.0  


> Ahg927489 jgi|Araly1|927489|scaffold_203050.1
Length=455

 Score =  638 bits (345),  Expect = 0.0
 Identities = 430/467 (92%), Gaps = 21/467 (4%)
 Strand=Plus/Plus

Query  91   GAGGAACAGTTAGCGCCGTCCATGGCGGGTCTTCAGAGATCCACCATCTCTTTCCGTCGA  150
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    GAGGAACAGTTAGCGCCATCCATGGCGGGTCTTCAGAGATCCACCATCTCTTTCCGGCGA  60

Query  151  CAGGGCTCTTCGGGTATAGTCTGGGACGATCGTCTCATCGCCGAGCTAAGCCAACAAGCG  210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CAGGGCTCTTCGGGTATAGTCTGGGACGATCGTCTCATCGCCGAGCTAAGCCAACAAGCG  120

Query  211  GCCAACGACCGGAAAGGCGAGACTCTACAACAGGACGAACAGGCCAAGCTGATTACGTCG  270
            |||||||||| ||||||||| |||||||||||| ||||||| |||||||||||||| |||
Sbjct  121  GCCAACGACCAGAAAGGCGAAACTCTACAACAGAACGAACATGCCAAGCTGATTACATCG  180

Query  271  GAAGTACAGGATCAGACAACCAAACCTATCGCCGGAGAAGGACTCAAACCTATCAGAACT  330
            |||| ||||||||||            ||||||||||| |||||||| ||||||||||||
Sbjct  181  GAAGGACAGGATCAG------------ATCGCCGGAGACGGACTCAAGCCTATCAGAACT  228

Query  331  GACGGA---------GGTATGGAGAGGAGTCGATCCAACGGAGGAGGAGCCATCCGCCAC  381
            ||||||         ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  229  GACGGAGGCGCCGGTGGTATGGAGAGGAGTCGATCCAACGGAGGAGGAGCCATCCGACAC  288

Query  382  CATCGAAACACAGGGAGAGTGTCTCCGGCGGTGGACCCGCCGTCGCCGAGACTGTCGGCG  441
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  289  CATAGAAACACAGGGAGAGTGTCTCCGGCGGTGGACCCGCCGTCGCCGAGACTGTCGGCG  348

Query  442  TTTGGGTGCTGCTCTGCCTTCGGGAAGAAACAGCCGGGGAAGAAGGTTAATCAGAGGAAA  501
            |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  349  TTTGGGTGTTGCTCAGCCTTCGGGAAGAAGCAGCCGGGGAAGAAGGTTAATCAGAGGAAA  408

Query  502  AGGCCAGCGAAGCGTAGATCCAGATAGGCATgaactaaagtctaaag  548
            |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  409  AGGCCAACGAAGCGTAGATCCAGATAGGCATGAACTAAAGTCTAAAG  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27982221078


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5