BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80180.1 Length=759 Score E Sequences producing significant alignments: (Bits) Value Ahg927489 jgi|Araly1|927489|scaffold_203050.1 638 0.0 > Ahg927489 jgi|Araly1|927489|scaffold_203050.1 Length=455 Score = 638 bits (345), Expect = 0.0 Identities = 430/467 (92%), Gaps = 21/467 (4%) Strand=Plus/Plus Query 91 GAGGAACAGTTAGCGCCGTCCATGGCGGGTCTTCAGAGATCCACCATCTCTTTCCGTCGA 150 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 GAGGAACAGTTAGCGCCATCCATGGCGGGTCTTCAGAGATCCACCATCTCTTTCCGGCGA 60 Query 151 CAGGGCTCTTCGGGTATAGTCTGGGACGATCGTCTCATCGCCGAGCTAAGCCAACAAGCG 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAGGGCTCTTCGGGTATAGTCTGGGACGATCGTCTCATCGCCGAGCTAAGCCAACAAGCG 120 Query 211 GCCAACGACCGGAAAGGCGAGACTCTACAACAGGACGAACAGGCCAAGCTGATTACGTCG 270 |||||||||| ||||||||| |||||||||||| ||||||| |||||||||||||| ||| Sbjct 121 GCCAACGACCAGAAAGGCGAAACTCTACAACAGAACGAACATGCCAAGCTGATTACATCG 180 Query 271 GAAGTACAGGATCAGACAACCAAACCTATCGCCGGAGAAGGACTCAAACCTATCAGAACT 330 |||| |||||||||| ||||||||||| |||||||| |||||||||||| Sbjct 181 GAAGGACAGGATCAG------------ATCGCCGGAGACGGACTCAAGCCTATCAGAACT 228 Query 331 GACGGA---------GGTATGGAGAGGAGTCGATCCAACGGAGGAGGAGCCATCCGCCAC 381 |||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 229 GACGGAGGCGCCGGTGGTATGGAGAGGAGTCGATCCAACGGAGGAGGAGCCATCCGACAC 288 Query 382 CATCGAAACACAGGGAGAGTGTCTCCGGCGGTGGACCCGCCGTCGCCGAGACTGTCGGCG 441 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 CATAGAAACACAGGGAGAGTGTCTCCGGCGGTGGACCCGCCGTCGCCGAGACTGTCGGCG 348 Query 442 TTTGGGTGCTGCTCTGCCTTCGGGAAGAAACAGCCGGGGAAGAAGGTTAATCAGAGGAAA 501 |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 349 TTTGGGTGTTGCTCAGCCTTCGGGAAGAAGCAGCCGGGGAAGAAGGTTAATCAGAGGAAA 408 Query 502 AGGCCAGCGAAGCGTAGATCCAGATAGGCATgaactaaagtctaaag 548 |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 409 AGGCCAACGAAGCGTAGATCCAGATAGGCATGAACTAAAGTCTAAAG 455 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27982221078 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5