BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80380.2
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909676 jgi|Araly1|909676|Al_scaffold_0002_2757 2056 0.0
> Ahg909676 jgi|Araly1|909676|Al_scaffold_0002_2757
Length=1365
Score = 2056 bits (1113), Expect = 0.0
Identities = 1287/1372 (94%), Gaps = 8/1372 (1%)
Strand=Plus/Plus
Query 114 ATGGCGGTCGCAATATCTGGGAGTAGTTTGATATCGTCGACTCTTCAGCATTATAATAAT 173
|||||||||||||| ||| |||||||||||||||| || |||||||| |||||||||||
Sbjct 1 ATGGCGGTCGCAATGTCTTGGAGTAGTTTGATATCACCGGCTCTTCAGGATTATAATAAT 60
Query 174 CGGATTTATATCCGAGATTATCCGATTCCGTGTCACTCTTCTAATCCAATTTGCAATTCT 233
|||||| || || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CGGATTAATCTCAGAGATTATCCGATTCCGTGTCACTCTTCTAATCCTATTTGCAATTCT 120
Query 234 TTTAATTTCAAAAGACGTTCGTTCTCTCCTTCTTCCCCCAAATTTAACGACCATGTCGTT 293
|||||||||||||||||| | || ||| || ||||| |||||| ||||||||||||||||
Sbjct 121 TTTAATTTCAAAAGACGTCCTTTTTCTTCTCCTTCCTCCAAATATAACGACCATGTCGTT 180
Query 294 AACCCTTCCTCTTCTTATTTATCCTCCAAGCTTTCTCCAATTCGAACCCATTCCTCTTTC 353
|||||||| ||||| | | | ||||||||||||||||| ||||||||||||| |||||||
Sbjct 181 AACCCTTCTTCTTC-T-TCT-TCCTCCAAGCTTTCTCCTATTCGAACCCATTTCTCTTTC 237
Query 354 GCTGCGTGTGGCTGCTCCTGGATTCAAGACAATTCAATGGTTCATGATTATGCTACAACA 413
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 238 GCTGGGTGTGGCTGCTCCTGGATTCAGGACAATTCAATGGTTCATGATTATGCT---ACA 294
Query 414 ACTAATGGGACGTCCAAGCGTTGCTCGGCGTTACCAACAACAAACACAGTGGATGTCTCT 473
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 295 ACTAATGGGACGTCCAAGCGATGCTCGGCGTTACCAACAACAAAAACAGTGGATGTCTCT 354
Query 474 TCGGTGTCAGATCTTTTTGAATTCATATGCTCGGGTCCTCTCGTAAACAAGATTGGTATC 533
|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 355 TCAGTGTCAGATCTTTTTGAATTCATTTGCTCGGGTCCTCTCGTAGACAAGATTGGTATC 414
Query 534 ACTCCTCAAAGAGTTGGCCAGTCTATTGACAAATGGTTACTCTACGGCTCACAACTTTGT 593
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 415 ACTCCTCAAAGAGTTGGCCAGTCTATTGACAAATGGTTACTATACGGCTCACAACTCTGC 474
Query 594 AGACTGTTTCAGCTTAATGAGCTTAAGCTTACAATTCCTCAGAAAGCTAGGCTATACCAC 653
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 475 AGACTATTTCAGCTTAATGAGCTTAAGCTCACAATTCCTCAGAAAACTAGGCTATACCAC 534
Query 654 TACTACATACCCGTTTTTATTTGGTGCGAAGATCAGATTGCTTTGCATAATTCCAAGTTT 713
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 535 TACTATATACCCGTATTTATTTGGTGCGAAGATCAGATTGCTTTGCATAAGTCCAAGTTT 594
Query 714 AAAGATGGAGATGATGTACCTCCTTTAGTGATTGGATTTAGCGCTCCTCAAGGATGTGGC 773
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 595 AAAGATGGAGATGATGTACCTCCGTTAGTGATTGGATTTAGCGCTCCTCAAGGATGTGGC 654
Query 774 AAGACTACACTTGTGTTTGCACTTGATTATCTTTTCAAGACAACAAAAAAGAAGTCAGCG 833
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 655 AAGACTACACTTGTGTTTGCACTTGACTATCTTTTCAAAACAACAAAAAAGAAGTCGGTG 714
Query 834 ACGATATCCGTAGACGATTTTTACTTGACTGCAGAAGGCCAGGCTGAATTGAGAAAAAAG 893
|||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 715 ACGATATCAATAGACGATTTTTACTTGACTGCACAAGGTCAGGCTGAATTGAGGGGAAAG 774
Query 894 AATCCAGGAAATGCACTTCTAGAGTATCGTGGAAATGCAGGAAGTCATGATCTGAAACTT 953
|||||||||||||||||| ||||||||||||| ||| ||||||| ||||||||| ||||
Sbjct 775 AATCCAGGAAATGCACTTTTAGAGTATCGTGGTAATTCAGGAAGCCATGATCTGCAACTC 834
Query 954 TCTGTTGAAACACTAGAAGCCCTGTCGAAACTGACCAAAGAAGGCT-TAAAGATGAAGGT 1012
|||||||| ||||||||||||||| | ||||||||||||||||| | |||||||||||||
Sbjct 835 TCTGTTGAGACACTAGAAGCCCTGACTAAACTGACCAAAGAAGG-TATAAAGATGAAGGT 893
Query 1013 ACCTAGGTACAATAAGTCTGCCTATAGTGGGAGAGGTGACAGAGCCGATTCATCAACATG 1072
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ACCTAGGTACGACAAGTCTGCCTATAGTGGGAGAGGTGACAGAGCCGATTCATCAACATG 953
Query 1073 GCCTGAAGTTGAAGGACCTCTATCGGTTATTCTCTTTGAGGGATGGATGCTTGGTTTTAA 1132
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 954 GCCTGAAGTTGAAGGACCTCTAACGGTTATTCTCTTTGAGGGATGGATGCTTGGTTTTAA 1013
Query 1133 GCCTCTTCCAGCTGACGTTGTTAAAGCAGTTGACCCACAGCTGGAGGTTGTGAATAAGAA 1192
|||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 1014 GCCTCTTCCAACTGACGTTGTTAAAGCAGTTGATCCGCAGCTGGAGATTGTGAATAAGAA 1073
Query 1193 CCTTGAAGCGTATTACGACGCATGGGACAAGTACATCGATGCTTGGGTCGTCATCAAAAT 1252
||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1074 CCTTGAAGCCTATTATGACGCATGGGACAAGTACATTGATGCTTGGGTTGTCATCAAAAT 1133
Query 1253 CCAGGACCCAAGTTATGTATACCGGTGGCGTCTTCAGGCGGAAATCGCCATGAGGCAGGA 1312
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CCAGGACCCAAGTTATGTATACCGGTGGCGTCTTCAGGCGGAAATCGCCATGAGGCAGGC 1193
Query 1313 TGGCCAAGCTGGGATGTCGGATGAGGAGGTGAATGACTTTGTGTCGCGGTATTTGCCGGC 1372
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGGTAAAGCTGGGATGTCGGATGAGGAGGTGAATGACTTTGTGTCGCGGTATTTGCCGGC 1253
Query 1373 GTATAAGGCCTATCTTCCAACTCTTTACGCGGAAGGGCCAAGCGGCTCAGACCCAGACCG 1432
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1254 CTATAAGGCCTATCTTCCAACTCTTTATGCGGAAGGACCAAGCGGCTCGGACCCAGACCG 1313
Query 1433 TGTCCTTGCGATAGATATCGATGAAGAAAGGAACCCGATACTCGCAAACTAA 1484
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TGTCCTTGTGATAGATATCGATGAAGAAAGGAACCCGATACTCGCAAACTAA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63915431110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5