BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80440.1 Length=1465 Score E Sequences producing significant alignments: (Bits) Value Ahg477208 jgi|Araly1|477208|fgenesh2_kg.2__2338__AT1G80440.1 1511 0.0 > Ahg477208 jgi|Araly1|477208|fgenesh2_kg.2__2338__AT1G80440.1 Length=1119 Score = 1511 bits (818), Expect = 0.0 Identities = 1002/1088 (92%), Gaps = 23/1088 (2%) Strand=Plus/Plus Query 157 ATGGAACTTATCCCCAATCTTCCCGACGACGTTGCTCGCGAGTGTCTCCTTCGCTCCTCC 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 42 ATGGAACTTATCCCCAATCTTCCCGACGACGTTGCTCGCGAGTGTCTCCTTCGCGCCTCC 101 Query 217 TACCAACAGTTCCCTGTCATCGCCTCCGTTTGCAGAGCCTGGAACCGTGAAGtctctctc 276 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 102 TACAAACAGTTCCCTGTCATCGCCTCCGTTTGCAGAGGCTGGAACCGTGAAGTCTCTCTC 161 Query 277 tctcAGTTTTTACATCAGCGAAAAGCTTCACGCCATAGCCAAGAGCTTCTTATTCTGTCT 336 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 162 TCTGACTTTTTACATCAGCGAAAAGCTTCACGCCATAGCCAAGAGCTTCTTATTCTCTCA 221 Query 337 CAGGCTCGTGTC---GACCCCGCTGGATCCGGAAAGATCATCGCTACGCCTGAATACCGG 393 |||||||||||| ||| |||||||||||||||| || |||||||||||||||||||| Sbjct 222 CAGGCTCGTGTCGAAGACTCCGCTGGATCCGGAAATATTTTCGCTACGCCTGAATACCGG 281 Query 394 ATCTCTGTTCTCGAATCCGGGTCGGGTCTTTGGACGGAGCTTCCTCCGATTCCTGGTCAA 453 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 GTCTCTGTTCTCGAATCCGGGTCGGGTCTTTGGACGGAGCTTCCTCCGATTCCTGGTCAA 341 Query 454 ACCAAAGGACTTCCTCTGTTCTGCAGATTGGTTTCCGTTGGATCCGATCTTATTGTCTTG 513 ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 342 ACCAAAGGACTCCCTCTGTTCTGCAGATTGGTTTCTGTCGGATCCGATCTTATTGTCTTG 401 Query 514 GGTGGGCTTGACCCGATTACGTGGCAGGCC-CATGATTCGGTATTCGTCTTCAGTTTTCT 572 ||||| ||||||||| |||||||||||||| | ||||||||| |||||||||||||| || Sbjct 402 GGTGGCCTTGACCCGGTTACGTGGCAGGCCTC-TGATTCGGTCTTCGTCTTCAGTTTCCT 460 Query 573 CACTTCCAAATGGCGCGTGGGGGCAACCATGCCAGGTGTACGGAGGTCCTTCTTCGGATG 632 ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| Sbjct 461 CACTTCCAAATGGCGCGTGGGAGCAACCATGCCAGGTGGACGGAGATCCTTCTTCGGATG 520 Query 633 CGCTTCGGATTCGGATCGGACGGTGCTGGTTGCGGGTGGACACAACGAAGAGAAATGTGC 692 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 521 CGCTTCGGATTCGGATCGGACGGTGTTGGTTGCGGGTGGACACGACGAAGAGAAATGTGC 580 Query 693 GCTTACGTCAGCTATGGTGTATGACGTGTCAGAAGACAAGTGGACGTTTTTGCCGGATAT 752 ||| |||||||| || |||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 581 GCTGACGTCAGCAATAGTGTATGATGTGGCAGAAGACAAGTGGACGTTTTTGCCGGATAT 640 Query 753 GGCGCGGGAACGAGACGAGTGCAAAGCGGTATTCCATGCTGGCAGATTCCACGTCATCGG 812 |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| Sbjct 641 GGCGCGGGAACGAGACGAGTGCAAAGCGATATTCCACGCTGGCAGATTCCGGGTCATCGG 700 Query 813 TGGATATGCCACTGAGGAACAGGGGCAGTTTAGTAAAACAGCCGAATCGTTCGATGTGTC 872 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 701 TGGATATGCCACTGAGGAACAGGGGCAGTTTAGTAAAACCGCTGAATCGTTCGATGTGTC 760 Query 873 TACGTGGGAGTGGGGTCCACTTACGGAGGACTTCCTCGACGACACCGGCGATACCGTTAG 932 ||||||| | ||||||||||||||||| ||||||||||||||||||| | || | | Sbjct 761 TACGTGGCAATGGGGTCCACTTACGGATGACTTCCTCGACGACACCG-C--TAGC-T--- 813 Query 933 CCCTCCGACCTGCGTCGCCGGTG-----GG-GATTTGTACGCGTGCTGGGGTGGCGATGT 986 | ||||| |||| |||||||| || ||||||||| |||||||| |||||||||| Sbjct 814 C--TCCGATATGCGCCGCCGGTGAAAACGGCGATTTGTACTCGTGCTGGCGTGGCGATGT 871 Query 987 GATGATGTTTCTAAATGACAAGTGGCAAAAGGTGGGCCAGATCCCTGCTGATGTGTACAA 1046 |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 872 GATGATGTTTTTAAATGACACGTGGCAGAAGGTGGGCCAGATCCCTGCTGATGTGTACAA 931 Query 1047 TGTTACTTACGTAGCGGT-G--AGGCCCGGGATGCTGATTGTGATCGGCAACGGGAAGGC 1103 || |||||||| | || | ||||| |||| |||||| |||||||||||||| ||||| Sbjct 932 CGTGACTTACGTGGTGGCAGCGAGGCCGGGGAAGCTGATAGTGATCGGCAACGGCAAGGC 991 Query 1104 GTTGGCTGGATACGGTGAAGCCACCGTAGGGTATATATGTGATTTAAGTAGCTCACGATG 1163 |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 992 ATTGGCTGGATACGGTGAAGCCACCGTAGGGTATACATGTGATTTAAGTAGCGCACGATG 1051 Query 1164 GGTAAAATTGGAAACACACGGTGGTCATGTTCAAGCTGGCTGCTTCTTGGAGGTCTAATG 1223 |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| Sbjct 1052 GGTAAAATTGGAAACACATGTTGGTCATGTTCAAGCTGGTTGCTTCTTGGAGGTCTAATG 1111 Query 1224 GAAAACCT 1231 ||||||| Sbjct 1112 TAAAACCT 1119 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54811862555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5