BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80480.1 Length=1640 Score E Sequences producing significant alignments: (Bits) Value Ahg477201 jgi|Araly1|477201|fgenesh2_kg.2__2331__AT1G80480.1 2021 0.0 Ahg920476 jgi|Araly1|920476|scaffold_101757.1 1051 0.0 > Ahg477201 jgi|Araly1|477201|fgenesh2_kg.2__2331__AT1G80480.1 Length=1362 Score = 2021 bits (1094), Expect = 0.0 Identities = 1280/1366 (94%), Gaps = 27/1366 (2%) Strand=Plus/Plus Query 104 ACTAAAATGGCGACGCTATCAACACTAGAGATTG-CTACGACCTTCCTCTCTTTCACCGC 162 |||||||||||||||||||||| ||||||||||| || ||||| | || | | ||| Sbjct 21 ACTAAAATGGCGACGCTATCAAAACTAGAGATTGCCT-CGACC-T--TC-C--T---CGC 70 Query 163 TCCTCGTTCCTCTGCCGCCTTCAACTATCGCTTTTCTTCTGCCGCCGTCTCTGTTCTCTC 222 || ||||||| |||||||||| |||||||||| |||||||||||||||||||||| |||| Sbjct 71 TCATCGTTCCGCTGCCGCCTTTAACTATCGCTCTTCTTCTGCCGCCGTCTCTGTTTTCTC 130 Query 223 CAGGCCCAGAGCTACCACCGTTTCCGTCAGAACGACGCCGTCTTTCTTCTATTCCCCGGT 282 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 131 CAGGCCCAGAGCTACCACCGTTTCCGTCAGAACTACGCCGTCTTTATTCTATTCCCCGGT 190 Query 283 GGTCCGCCGTCAAAGATTCTCATCTGTCTCCGCCTCAGCTACGCAGACTGAAGATTCTGA 342 ||| ||||||| |||||||||||||||||| | ||||||||||||||| || ||||| || Sbjct 191 GGTTCGCCGTCGAAGATTCTCATCTGTCTCTGTCTCAGCTACGCAGACAGAGGATTCCGA 250 Query 343 TGTCACCACTAAGATTCCGCCAGATAACCGGATTCCGGCTACTATTATCACCGGTTTTTT 402 ||| ||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||| Sbjct 251 TGTTACCACTAAGATCCCGGCAGATAACCGGATTCCGGCTACTATTATCACGGGGTTTTT 310 Query 403 GGGCTCTGGCAAGACAACATTGCTGAATCATATACTGACCAGAGATCATGGGAAGCGAAT 462 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 GGGCTCCGGCAAGACAACATTGCTGAATCATATACTGACCAGAGATCATGGGAAGCGAAT 370 Query 463 AGCCGTGATTGAGAATGAGTTTGGTGAAGTTGACATTGATGGGTCACTTGTTGCTTCTAA 522 |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 371 AGCCGTCATCGAGAATGAGTTTGGTGAAGTTGACATTGATGGCTCACTTGTTGCTTCTAA 430 Query 523 ATCTATTGGAGCTGAGGATATTGTGATGCTCAACAATGGCTGCCTTTGTTGCACTGTTAG 582 |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 431 ATCTATTGGAGCAGAGGATATTGTTATGCTCAACAATGGCTGCCTCTGTTGCACTGTTAG 490 Query 583 GGGTGATCTTGTCAGGATGATTGGAGAATTAGTCAATACCAAGAAAGGAAAGTTCGATCA 642 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 491 GGGTGATCTTGTCAGGATGATTGGAGAATTAGTCAATACCAAGAAAGGAAAGTTCGACCA 550 Query 643 TATAGTCATAGAGACTACAGGATTGGCAAACCCGGCACCGATTATCCAAACCTTTTATGC 702 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 551 TATTGTCATTGAGACTACAGGATTGGCAAACCCGGCACCGATTATCCAAACCTTTTATGC 610 Query 703 CGAGGAAGAAATTTTCAATGATGTCAAACTGGACGGTGTTGTTACTCTAGTTGATGCTAA 762 ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| Sbjct 611 CGAGGAAGAAATTTTCAATCATGTCAAACTGGATGGCGTTGTTACTCTAGTTGATGCTAA 670 Query 763 GCATGCTCGTTTGCATCTAGACGAGGTCAAACCCGAAGG-TGTTGTCAATGAGGCTGTTG 821 ||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||| Sbjct 671 GCATGCTCGTTTGCATCTAGATGAGGTCAAACCC-ACGGGTGTTGTCAATGAGGCTGTTG 729 Query 822 AACAAATAGCTTATGCAGATCGTATCATAGTTAACAAGACTGATCTTGTTGGTGAGGCGG 881 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 730 AACAAATAGCTTATGCAGATCGTATCATAGTCAACAAGACTGATCTTGTTGGTGAGGCGG 789 Query 882 AATTAGGTTCGGTGGTACAACGCATAAAGACAATAAACAGCATGGCTCAGATGACGCGAA 941 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 790 AATTAGGTTCGGTGGTGCAACGCATAAAGACAATAAACAGCATGGCTCAGATGACGCGGA 849 Query 942 CAAAGTACGGAAATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGA 1001 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 850 CAAAGTACGGAAACGTTGACTTGGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGA 909 Query 1002 GAATCGAAAGCTCTGTGAATGAAGATGATAAGGGAgatcaccatgatcacgaccatgatc 1061 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 910 GAATTGAAAGCTCTGTGAATGAAGACGATAAGGGAGATCACCATGATCACGACCATGA-C 968 Query 1062 atcatcatgatcacaaccatgaccacgaccatcatcaccacgatggacatgatcatcatc 1121 || | || | || |||||||||||| ||||||||||||| |||||| ||||| | Sbjct 969 --CA-C--GA-C-CA----TGACCACGACCACCATCACCACGATGAACATGAGCATCA-C 1016 Query 1122 a-tcattctcatgatcacacccatgatcCCGGTGTTTCTTCAGTCAGTATAGTTTGCGAA 1180 | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 1017 AATCATTCTCACGATCACACCCATGATCCTGGTGTTTCTTCAGTCAGTATAGTTTGCCAA 1076 Query 1181 GGAAGCTTAGACCTTGAGAAGGCAAACATGTGGCTCGGGACGTTACTGATGGAACGCAGT 1240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 GGAAGCTTAGACCTTGAGAAGGCAAACATGTGGCTCGGGACGTTACTGATGGAACGCAGT 1136 Query 1241 GAAGACATCTACAGAATGAAAGGTCTCCTCTCGGTCCACACCATGGAGGAGAGATTCGTG 1300 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1137 GAAGACATCTACAGAATGAAAGGTCTCCTCTCGGTTCACACCATGGAGGAGAGATTTGTG 1196 Query 1301 TTTCAAGGAGTCCATGACATATTTCAAGGATCACCAGACAGGTTATGGGGAAGAGAGGAG 1360 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| Sbjct 1197 TTTCAAGGAGTCCATGACATATTTCAAGGATCACCAGACCGGTTATGGGGAAGAAACGAG 1256 Query 1361 GAGAGAGTGAATAAGATCGTTTTCATTGGTAAGAATTTGAACAGGGAGGAGTTAGAGAAG 1420 ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1257 GAGAGAGTGAACAAGATCGTCTTCATTGGTAAGAATTTGAACAGGGAGGAGTTGGAGAAG 1316 Query 1421 GGTTTTAAAGCTTGCTTGATTTGATTTTTGCACTAGCTCTATGTAT 1466 ||||||||||||||||||||||||| |||||||||| | ||||||| Sbjct 1317 GGTTTTAAAGCTTGCTTGATTTGATATTTGCACTAGGTGTATGTAT 1362 > Ahg920476 jgi|Araly1|920476|scaffold_101757.1 Length=1382 Score = 1051 bits (569), Expect = 0.0 Identities = 954/1137 (84%), Gaps = 38/1137 (3%) Strand=Plus/Plus Query 329 ACTGAAGATT-C-T-GATGTCACCACTAAG-ATTCCGCCA-GATAACCGGATTCCGGCTA 383 ||||| |||| | | ||||| ||||| || ||| | || || || || |||||||| | Sbjct 247 ACTGATGATTCCTTCGATGTTTCCACTGAGAATT-TG-CAGGACAATCGAATTCCGGCCA 304 Query 384 CTATTATCACCGGTTTTTTGGGCTCTGGCAAGACAACATTGCTGAATCATATACTGACCA 443 ||||||||||||| || |||| ||||| ||||| |||||||| || |||||| |||| Sbjct 305 CTATTATCACCGGGTTCCTGGGTTCTGGTAAGACGACATTGCTAAACCATATATTGACGG 364 Query 444 GAGATCATGGGAAGCGAATAGCCGTGATTGAGAATGAGTTTGGTGAAGTTGACATTGATG 503 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 365 GAGATCATGGGAAGCGCATAGCCGTGATTGAGAATGAGTTTGGTGAAGTCGACATTGATG 424 Query 504 GGTCACTTGTTGCTTCTAAATCTATTGGAGCTGAGGATATTGTGATGCTCAACAATGGCT 563 | || ||||| || ||||| || |||||| |||||||| ||||||| |||||||||| Sbjct 425 GATCGCTTGTGGCAGCTAAAACTGCTGGAGCAGAGGATATAATGATGCTTAACAATGGCT 484 Query 564 GCCTTTGTTGCACTGTTAGGGGTGATCTTGTCAGGATGATTGGAGAATTAGT-CAATACC 622 | || ||||| |||||||||||||||||||| ||||||||| ||||| || || ||| Sbjct 485 GTCTGTGTTGTACTGTTAGGGGTGATCTTGTGAGGATGATTTCTGAATTGGTTCAG-ACC 543 Query 623 AAGAAAGGAAAGTTCGATCATATAGTCATAGAGACTACAGGATTGGCAAACCCGGCACCG 682 |||||||||| |||||| ||||| || || ||||| ||||||||||| ||||| || ||| Sbjct 544 AAGAAAGGAAGGTTCGACCATATCGTTATTGAGACAACAGGATTGGCGAACCCTGCCCCG 603 Query 683 ATTATCCAAACCTTTTATGCCGAGGAAGAAATTTTCAATGATGTCAAACTGGACGGTGTT 742 ||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| || ||| Sbjct 604 ATTATTCAAACTTTTTATGCTGAGGATGAAATTTTCAATGATGTCAAACTGGATGGAGTT 663 Query 743 GTTACTCTAGTTGATGCTAAGCATGCTCGTTTGCATCTAGACGAGGTCAAACCCGAAGG- 801 || ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 664 GTCACTCTGGTTGATGCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTGAAGGC 723 Query 802 TGTTGTCAATGAGGCTGTTGAACAAATAGCTTATGCAGATCGTATCATAGTTAACAAGAC 861 | | ||||||||||| || |||||||||||||| ||||||||||||||| |||||||||| Sbjct 724 TAT-GTCAATGAGGCAGTAGAACAAATAGCTTACGCAGATCGTATCATAATTAACAAGAC 782 Query 862 TGATCTTGTTGGTGAGGCGGAATTAGGTTCGGTGGTACAACGCATAAAGACAATAAACAG 921 |||||||||||||||| | ||| ||| ||| ||| | || || |||||||| |||||||| Sbjct 783 TGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAAACAG 842 Query 922 CATGGCTCAGATGACGCGAACAAAGTACGGAAATGTTGACTTAGATTATGTTCTTGGAAT 981 ||||||||| |||| ||| |||||||| || || |||||||| ||||||||||||||||| Sbjct 843 CATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTGGAAT 902 Query 982 TGGAGGTTTTGATCTAGAGAGAATCGAAAGCTCTGTGAATGAAGATGATAA-G-GGAgat 1039 |||||| ||||||||||| ||||| || ||||||||||||||| | ||| | | || | | Sbjct 903 TGGAGGGTTTGATCTAGAAAGAATTGAGAGCTCTGTGAATGAAAAAGATCACGAGG-G-T 960 Query 1040 caccatgatca-cgaccatgatcatcatcatgatcacaaccatgaccacga-c-catca- 1095 || ||||||| | ||||||| ||| | |||| ||| || || ||| || | || || Sbjct 961 CATGATGATCATC-ACCATGAACATGACCATGGTCATGAC--TG-CCATGATCACAACAA 1016 Query 1096 tcaccacgatggacatgatcatc-atcatcattctcatgatcacacccatgatcCC-GGT 1153 | | || ||| ||||| || | | || ||||||||||||||||| ||||| ||| ||| Sbjct 1017 TGAGCATGAT---CATGAACA-CGAGCACCATTCTCATGATCACACTCATGA-CCCTGGT 1071 Query 1154 GTTTCTTCAGTCAGTATAGTTTGCGAAGGAAGCTT-AGACCTTGAGAAGGCAAACATGTG 1212 ||| |||||||||||||||||||||||||| | || |||||| |||||||| |||||||| Sbjct 1072 GTTGCTTCAGTCAGTATAGTTTGCGAAGGA-GATTTAGACCTCGAGAAGGCTAACATGTG 1130 Query 1213 GCTCGGGACGTTACTG-ATGGAACGCAGTGAAGACATCTACAGAATGAAAGGTCTCCTCT 1271 ||| ||| || || || | |||| ||||| || |||||||||||||||||| |||||| Sbjct 1131 GCTTGGGGCGCTATTGTACC-AACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCT 1189 Query 1272 CGGTCCAC-ACCATGGAGGAGAGATTCGTGTTTCAAGGAGTCCATGACATATTTCAAGGA 1330 | ||||| || ||||| ||||||||||||||||| ||||| ||||| |||||| ||||| Sbjct 1190 CCGTCCAAGAC-ATGGACGAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGA 1248 Query 1331 TCACCAGACAGGTTATGGGGAAGAGAGGAGGAGA-GAGTGAATAAGATCGTTTTCATTGG 1389 ||||||||| |||||||| ||| ||| ||| | | || || |||||||||||||| || Sbjct 1249 TCACCAGACCGGTTATGGAGAAAAGATGAG-ACAAGAACCAACAAGATCGTTTTCATCGG 1307 Query 1390 TAAGAATTTGAACAGGGAGGAGTTAGAGAAGGGTTTTAAAGCTTGCTTGATTTGATT 1446 |||| ||||||| ||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1308 CAAGAGTTTGAACCGGGAGGAGTTAGAGATGGGTTTTAGAGCTTGCTTGATTTGATT 1364 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61477655430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5