BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80600.1 Length=1590 Score E Sequences producing significant alignments: (Bits) Value Ahg909652 jgi|Araly1|909652|Al_scaffold_0002_2733 2213 0.0 > Ahg909652 jgi|Araly1|909652|Al_scaffold_0002_2733 Length=1377 Score = 2213 bits (1198), Expect = 0.0 Identities = 1319/1378 (96%), Gaps = 5/1378 (0%) Strand=Plus/Plus Query 41 ATGGCGTCTCTTAGCCAAATCACCCTGCCACGCGCGCCGTCGTCGGAGATTGGCCTCTTA 100 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1 ATGGCGTCTCTTGGCCAAATCACCCTGCCACGCGCGCCGTCGTCTGAGATTGGCGTCTTT 60 Query 101 CGCCGTCGATTGGAGCGGCCGATCATCAGAACCCGGATCGGATTCAACGGCCGGATTGCG 160 ||||||||||| || || |||||||||||||||||||||||||||| ||||||||| ||| Sbjct 61 CGCCGTCGATTTGAACGACCGATCATCAGAACCCGGATCGGATTCAGCGGCCGGATAGCG 120 Query 161 AGCGTATTGACTAACGCAGGGGACCAAGCGGTGTCGGTAAAAGCGAGTGTGAGCCAGAAG 220 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 AGCGTATTGACAAACGCAGGGGAACAAGCGGTGTCGGTAAAAGCGAGTGTGAGCCAGAAG 180 Query 221 GTGATTGAAGAGGAAGCCAAAGTTATTGTGGGTACCTACGCGCGAGCTCCAGTGGTTCTC 280 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 181 GTGATTGAAGAGGAAGCTAAAGTTATTGTGGGTACCTACGCGCGAGCGCCAGTGGTGCTT 240 Query 281 TCGAGTGGGAAAGGTTGTAAATTGTTCGACCCTGAAGGAAAAGAGTATCTGGATTGTGCA 340 || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 241 TCAAGTGGGAAAGGTTGTAAATTGTTCGACCCAGAAGGGAAAGAGTATCTGGATTGTGCA 300 Query 341 TCTGGAATCGCTGTGAATGCTCTTGGTCATGGAGATCCTGATTGGCTTCGAGCTGTCACT 400 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 TCTGGAATTGCTGTGAATGCTCTTGGCCATGGAGATCCTGATTGGCTTCGAGCTGTCACT 360 Query 401 GAGCAAGCTGGTGTTCTTGCCCATGTCAGCAATGTTTATTACACGATCCCT---CAGATA 457 || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 361 GACCAAGCTGGTGTTCTTGCCCATGTCAGCAATGTCTATTACACGATCCCTCAGCAGATA 420 Query 458 GAGCTCGCAAAACGCTTGGTGGCGAGTTCTTTTGCAGACCGTGTATTCTTTTGTAACTCG 517 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 421 GAGCTCGCAAAACGCTTGGTGGCAAGTTCTTTTGCAGACCGTGTATTCTTTTGTAACTCT 480 Query 518 GGAACGGAAGCCAATGAAGCAGCCATTAAGTTTTCAAGAAAATTCCAGAGATTCACCCAT 577 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 481 GGAACGGAAGCCAATGAAGCAGCCATCAAGTTTTCAAGAAAGTTCCAGAGATTCACCCAT 540 Query 578 CCAGAAGACAAAGAAGTCGCGACAGGTTTCATCGCCTTTACAAACAGCTTCCATGGAAGA 637 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CTAGAAGACAAAGAAGTCGCGACAGGTTTCATCGCCTTTACAAACAGCTTCCATGGAAGA 600 Query 638 ACCTTAGGAGCTCTTGCCTTGACAAGCAAAGAACAATACAGAACTCCTTTCGAACCCATC 697 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 601 ACCTTAGGAGCTCTTGCTTTGACAAGCAAAGAACAATACAGAACTCCTTTCGAACCCATC 660 Query 698 ATGCCTGGTGTAACCTTCTTAGAATATGGTAACATTCAAGCAGCCACAGACCTTATCCGC 757 ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 661 ATGCCAGGTGTAACATTCTTAGAATATGGTAACATTCAAGCCGCCACAGACCTTATCCGC 720 Query 758 TCAGGTAAAATAGCTGCAGTTTTTGTGGAACCAATTCAAGGAGAAGGCGGGATTTACTCT 817 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCAGGTAAAATAGCTGCAGTTTTTGTGGAACCAATTCAAGGAGAAGGCGGGATTTACTCT 780 Query 818 GCTACAAAAGAGTTTCTGCAATCTCTGCGCTCTGCTTGTGATGCCGCTGGATCTCTTCTC 877 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GCTACAAAAGAGTTTCTGCAATCTCTGCGCTCTGCTTGTGATGCCGCTGGATCTCTTCTC 840 Query 878 GTCTTCGATGAGGTTCAATGTGGTTTGGGTCGAACGGGTCTCATGTGGGCTTATGAAGCC 937 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GTCTTCGATGAGGTTCAATGTGGTTTGGGTCGAACGGGTCTCATGTGGGCTTATGAAGCC 900 Query 938 TTCGGTGTGACTCCTGACATAATGACGGTTGCAAAGCCTTTAGCTGGTGGTTTACCTATT 997 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TTCTGTGTAACTCCTGACATAATGACGGTTGCAAAGCCTTTAGCTGGTGGTTTACCTATT 960 Query 998 GGAGCGGTGCTGGTGACTGAAAAGGTTGCAGAGACCATAAACTACGGAGATCATGGAAGT 1057 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 961 GGAGCGGTGCTCGTGACTGAAAAGGTTGCAGAGACCATAAAATACGGAGATCACGGAAGT 1020 Query 1058 ACATTTGCAGGCAGCCCTCTTGTGTGCAGTGCAGCCATTGCAGTTATGGATAAAGTATCG 1117 ||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1021 ACATTTGCAGGCAACCCTCTTGTGTGCAGTGCAGCCATTGCAGTCATTGATAAAGTATCG 1080 Query 1118 AAACCCTCTTTCTTGTCCAGTGTCTCAAATAAAGGTCGATACTTTAGAGACCTGTTGGTG 1177 || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1081 AAGCCCTCTTTCTTGTCCAGTGTCTCAATTAAAGGTCGATACTTTAGAGACCTGTTGGTT 1140 Query 1178 AAAAAACTTGGAGGAAACTCGCACGTGAAGGAAGTGAGAGGCGAAGGGCTTATCATAGGA 1237 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 AAAAAACTTGGTGGAAACTCGCACGTGAAGGAAGTGAGAGGCGAAGGGCTTATCATAGGA 1200 Query 1238 GTGGAGCTCGATGTGCCGGCAAGCTCACTGGTTGATGCTTGCCGAGATTCGGGTCTTCTG 1297 ||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1201 GTGGAACTCGATGTGCCGGCAAATTCACTGGTCGATGCTTGCCGAGATTCGGGTCTTCTG 1260 Query 1298 ATCTTGACAGCGGGGAAAGGAAATGTCGTCAGGATTGTTCCTCCGTTGGTTATATCAGAG 1357 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 ATTTTGACAGCAGGGAAAGGAAATGTCGTCAGGATTGTTCCTCCGTTGGTTATATCAGAG 1320 Query 1358 GAGGAAATCGAACGTGCGGTTGAGATCATGTCTC-AAAATTTGACTGCGCTTGATTGA 1414 |||||||||||||||||||||||||| |||| || ||||||| | || |||||| ||| Sbjct 1321 GAGGAAATCGAACGTGCGGTTGAGATAATGT-TCCAAAATTTAATTGTGCTTGACTGA 1377 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59573143180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5