BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80700.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477177 jgi|Araly1|477177|fgenesh2_kg.2__2307__AT1G80700.1 1199 0.0
Ahg485221 jgi|Araly1|485221|fgenesh2_kg.5__1213__AT1G80700.1 645 0.0
Ahg931116 jgi|Araly1|931116|scaffold_303573.1 318 4e-86
Ahg927383 jgi|Araly1|927383|scaffold_202944.1 82.4 5e-15
> Ahg477177 jgi|Araly1|477177|fgenesh2_kg.2__2307__AT1G80700.1
Length=836
Score = 1199 bits (649), Expect = 0.0
Identities = 768/822 (93%), Gaps = 21/822 (3%)
Strand=Plus/Plus
Query 40 CGCCGGGAGAGATCA--A--GATGATTCGCGGCAGAGGCTCGT-GGTCCGGATTATCGAC 94
||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 18 CGCCGGGAGAGATCATCAGGGATGATTCGCGGCAGAGGCTCGTGGGT-CGGATTATCGAC 76
Query 95 CCGGTTGAAGCTTTACAGGACCCGACGTTTCTGCACAAAAGGAGAGAA---T------AA 145
|||||||||||||||||||| ||||||| ||||||| ||||||||||| | ||
Sbjct 77 CCGGTTGAAGCTTTACAGGATCCGACGTCTCTGCACGAAAGGAGAGAATGGTGGGAACAA 136
Query 146 ACTCGAGAAGACGGAATCTAGCGTTGCGCATCACAGCGACACTGAATCTAGTGTTTCTCG 205
| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 137 AGTCGAGAAGACGGAATCTAGCGTTGCTCATTACAGCGAGACTGAATCTAGTGTTTCTCG 196
Query 206 CTACGATGAGACCTATAAGAAACTCGATAAGCTCGATTTCGTTACCGCTGCGAAGATCTT 265
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 197 CTACGATGAGACCTATAAGAAACTCGACAAGCTCGATTTCGTGACCGCTGCGAAGATCTT 256
Query 266 GTTCACTGAACCACCCAAGAAGAACAAATTTGGGTTTGATTGGCATGTGGTGCAATTCAT 325
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 257 GTTCACTGAACCACCCAAGAAGAATAAATTTGGGTTTGATTGGCATGTGGTGCAATTCAT 316
Query 326 CATCGTCTGCTTGCCATCTGTAGCTGTGTATCTGGTTGCTCAATATGCTCGCCGGAAAAT 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TATCGTCTGCTTGCCATCTGTAGCTGTGTATCTGGTTGCTCAATATGCTCGCCGGAAAAT 376
Query 386 GAAGATCATGGATGCTGAACTTGGagagaagaaaaggaaagaagaagaaaagaaagagaa 445
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GAAGATCATGGATGCAGAACTTGGAGAGAAGAAAAGGAAAGAAGAAGAAAAGAAAGAGAA 436
Query 446 agaagaagCTGAACAAAAGGCATTACAAGTAGAGGCAGCAACCAAGTCTCACGAAGAGCT 505
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 437 AGAAGAAGCTGAACAAAAGGCATTAGAAGTAGAAGCAGCAACCAAGTCTCACGAAGAGCT 496
Query 506 AATGGAGATGAGACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTTTGGA 565
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 497 AATGGAGATGAAACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAGATTGTTTTGGA 556
Query 566 AACCAAGAAACCTTCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCTACTAAACT 625
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 557 AACCAAGAAACCTTCAGGAAATGCTCCAACCAAGACCCAAGAAGATCAATCTACTAAACT 616
Query 626 CTCCCCAAAAGAAGTATC-ACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAACCAG 684
|||||||||||||| ||| | | |||||||||||||| ||| |||||||||| |||||||
Sbjct 617 CTCCCCAAAAGAAGAATCGAAA-CCAGAAAAAGAACAGAAGAGCAATGTACAAAAACCAG 675
Query 685 GTGATGGACCTCACTGAGATGATTAGAAGGGAAACTTAGGTGGTAGATGACGAAGAATGT 744
||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||| | |
Sbjct 676 GTGATGGACCTCATTGAGATGATTACAAGGGAAGCTTAGGTGGTAGATGAAGAAGA-TAT 734
Query 745 ACCCTTCTGTGGG-TTATTATTCTTTTGGAACTGA-TACACTAGTTGATGCAGTTCTCTC 802
||||||||||||| ||||||| ||||||||||| | |||| ||||||||||| |||||||
Sbjct 735 ACCCTTCTGTGGGGTTATTATGCTTTTGGAACT-ACTACAGTAGTTGATGCAATTCTCTC 793
Query 803 ATTTTACTTTTGTTTGTTGAATCACCTTTATAATTAATATAG 844
||||| |||||||||||||||||||||||| |||||||||||
Sbjct 794 ATTTTGCTTTTGTTTGTTGAATCACCTTTAGAATTAATATAG 835
> Ahg485221 jgi|Araly1|485221|fgenesh2_kg.5__1213__AT1G80700.1
Length=587
Score = 645 bits (349), Expect = 0.0
Identities = 426/463 (92%), Gaps = 6/463 (1%)
Strand=Plus/Plus
Query 400 CTGAACTTGGagagaagaaaaggaaagaagaagaaaagaaagagaaagaagaagCTGAAC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 CTGAACTTGGAGAGAAGAAAAGGAAAGAAGAAGAAAAGAAAGAGAAAGAAGAAGCTGAAC 187
Query 460 AAAAGGCATTACAAGTAGA-GGCAGCAACCAAGTCTCACGAAGAGCTAATGGAGATGAGA 518
||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 188 AAAAGGCATTAGAAGTAGAAGG-AGCAACCAAGTCTCACGAAGAGCTAATGGAAATGAAA 246
Query 519 CAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTTTGGAAACCAAGAAACCT 578
|||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 247 CAGAGATTGGGAAAAATCGAAGAGACAATAAAGGAGATTGTTTTGGAAACCAATAAACCT 306
Query 579 TCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCTACTAAACTCTCCCCAAAAGAA 638
|||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 307 TCAGAGAAAGCTCCGACCAAAACCCAAGAAGATCAATATACTAAACTCTCCCCAAAAGAA 366
Query 639 GTATCACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAACCAGGTGATGGACCTCAC 698
| |||| | |||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 367 GAATCAAAACCAGAAAAAGAACATAAGGGCAATGTACAGAAACCAGCTGATGGACTTCAT 426
Query 699 TGAGATGATTAGAAGGGAAACTTAGGTGGTAGATGACGAAGAATGTACCCTTCTGTGGGT 758
|||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct 427 TGAGATTATTAGAAGGGAAACTTAGGTGGTAGATGAAGAAGGATGTACCCTTCTGTGAGT 486
Query 759 TATTATTCTTTTGGAACTGATACACTAGTTGATGCAGTTCTCTCATTTT-ACTTTTGTTT 817
|||||| ||||||||||| ||||| ||||||||||| || || ||||| | ||||| ||
Sbjct 487 TATTATGCTTTTGGAACTAATACAGTAGTTGATGCAATTTTCGGATTTTGA-TTTTGGTT 545
Query 818 GTTGAATCACCTTTAT-AATTAATATAGATTACAAGGATTTGC 859
|||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 546 GTTGAATCACCTTT-TGAATTAATATAGATCACAAGGATTTGC 587
Score = 167 bits (90), Expect = 1e-40
Identities = 104/111 (94%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 235 AGCTCGATTTCGTTACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAAT 294
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 20 AGCTCGATTTTGTGACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAATAAAT 79
Query 295 TTGGGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTG 345
|||| |||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 80 TTGGCTTTGATTGGCATGTGGTGCAATTCTTTATCGTCTGTTTGCCATCTG 130
> Ahg931116 jgi|Araly1|931116|scaffold_303573.1
Length=437
Score = 318 bits (172), Expect = 4e-86
Identities = 204/220 (93%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 502 AGCTAATGGAGATGAGACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTT 561
||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 218 AGCTAATGGAGATGAAACAGAGACTGGGAAAAATCGAAGAGCCAATAAAAGAGATTGTTT 277
Query 562 TGGAAACCAAGAAACCTTCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCTACTA 621
|||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||
Sbjct 278 TGGAAACCAATAAACCTTCTGGGAAAGCTCCAACCAAAACCCAAGAAGATCAATATACTA 337
Query 622 AACTCTCCCCAAAAGAAGTATCACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAAC 681
|||||||||||||||||| |||| | |||||||||||| | |||||||||||||||||||
Sbjct 338 AACTCTCCCCAAAAGAAGAATCAAAACCAGAAAAAGAATATAAGGGCAATGTACAGAAAC 397
Query 682 CAGGTGATGGACCTCACTGAGATGATTAGAAGGGAAACTT 721
||| |||||||| ||| |||||| ||||||||||||||||
Sbjct 398 CAGCTGATGGACTTCATTGAGATTATTAGAAGGGAAACTT 437
> Ahg927383 jgi|Araly1|927383|scaffold_202944.1
Length=415
Score = 82.4 bits (44), Expect = 5e-15
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 299 GTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG 348
||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 83 GTTTGATTGGCATGTGGTGCAATTCATCAACGTCTGCTTGCCATCTCTAG 132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5