BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80740.1 Length=2593 Score E Sequences producing significant alignments: (Bits) Value Ahg927425 jgi|Araly1|927425|scaffold_202986.1 1221 0.0 Ahg907286 jgi|Araly1|907286|Al_scaffold_0002_367 204 3e-51 > Ahg927425 jgi|Araly1|927425|scaffold_202986.1 Length=2673 Score = 1221 bits (661), Expect = 0.0 Identities = 954/1093 (87%), Gaps = 30/1093 (3%) Strand=Plus/Plus Query 1 ATGGCAGCGAGAAACAAACAAAAGAAACGCGCTGAGCCAGAGTCAGATCTGTGCTTCGCT 60 ||||||| || ||||||||| | |||||||||||||||||||||||||||||| || ||| Sbjct 23 ATGGCAGTGAAAAACAAACAGATGAAACGCGCTGAGCCAGAGTCAGATCTGTGTTTTGCT 82 Query 61 GGCAAACCAATGTCTGTTGTGGAGTCGACGATTCGATGGCCTCATCGCTACCAATCCAAG 120 || |||||| |||||||||| ||||||| ||||||||||||||||||||||| ||||||| Sbjct 83 GGGAAACCAGTGTCTGTTGTCGAGTCGATGATTCGATGGCCTCATCGCTACCCATCCAAG 142 Query 121 AAAACAAAGCTCCAAGCTCCGACCAAAAAACCTGCAAATAAGGGTGGCAAAAAAGAAGAT 180 ||||||||||| ||||| | | | | || | ||||||| | |||||| || Sbjct 143 AAAACAAAGCTTGAAGCT--G--C----GA-CGGCGACGAAGGGTGAC-AAAAAG--GA- 189 Query 181 GAAGAGATAATAAAGCAAGCTAAATGCCACTTTGA-CAAAGCTTTGGTTGATGGAGTTCT 239 || || ||||||| ||| ||| | |||| || | |||||||||||||||||||||| Sbjct 190 -AA-AG---ATAAAGCTAGCGAAACGTCACTACGAGC-AAGCTTTGGTTGATGGAGTTCT 243 Query 240 CATCAACCTAAACGACGATGTCTATGTCACGGGTCTACCAGGGAAGCTGAAATTCATTGC 299 ||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 244 CATCAACCTCAATGACGATGTCTACGTCACGGGTCTACCAGGGAAGCTGAATTTCATTGG 303 Query 300 AAAAGTTATCGAGCTCTTTGAAGCTGATGATGGGGTGCCGTATTGTCGCTTTCGATGGTA 359 ||||||||| || | || ||||| |||||||||||||| || | ||| ||||||||| Sbjct 304 AAAAGTTATTGAAATGTTCGAAGCAGATGATGGGGTGCCTTACTCTCGGATTCGATGGTT 363 Query 360 CTATC-GGCCTGAAGATACTTTAATCGAAAGATTTTCCCACCTTGTGCAACCAAAGAGAG 418 || | | || || |||||||| |||||||||||| || | ||||||||| |||||| | Sbjct 364 TTA-CAGACCCGATGATACTTTGATCGAAAGATTTGCCGAACTTGTGCAAAAAAAGAGGG 422 Query 419 TGTTTCTCTCAAATGATGAGAATGACAATCCTCTCACCTGCATCTGGTCAAAAGTCAACA 478 ||||||| ||||||| |||| | || ||||||||||||||||| | || |||||||||| Sbjct 423 TGTTTCTATCAAATGTTGAGGACGATAATCCTCTCACCTGCATTTATTCGAAAGTCAACA 482 Query 479 TCGCTAAAGTCCCATTACCTAAGATTACCTCCAGAATCGAGCAAAGGGTTATTCCTCCTT 538 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 483 TCGCTAAAGTCCCATTACCAAAGATTACCTCCAGAATCGAGCAAAGGGTTATTCCTCCAT 542 Query 539 GTGATTACTACTACGATATGAAGTACGAAGTTCCTTATCTCAACTTTACAAGTGCAGATG 598 |||| || ||||| ||||||||||||||||| || ||||| || |||||||||||||||| Sbjct 543 GTGACTATTACTATGATATGAAGTACGAAGTGCCATATCTGAATTTTACAAGTGCAGATG 602 Query 599 ATGGTAGTGATGCCTCATCAAGTCTTTCAAGTGACTCTGCCTTGAATTGCTTTGAAAATC 658 ||| || || ||| ||||||| |||||||||||| || |||| |||||||||||||| || Sbjct 603 ATGATACTGCTGCGTCATCAACTCTTTCAAGTGATTCCGCCTCGAATTGCTTTGAAACTC 662 Query 659 TCCACAAGGATGAAAAAT-TCTTATTGGATCTATACAGTGGGTGCGGAGCGATGTCCACA 717 ||||||| |||||||||| | ||||||||||| |||||||| |||||||||||||||||| Sbjct 663 TCCACAAAGATGAAAAATAT-TTATTGGATCTGTACAGTGGATGCGGAGCGATGTCCACA 721 Query 718 GGTTTCTGCATGGGAGCTTCCATATCAGGAGTAAAATTGATTACGAAATGGTCTGTGGAT 777 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 722 GGTTTCTGCATGGGAGCTTCCATAGCAGGAGTAAAATTGATTACGAAATGGTCTGTGGAT 781 Query 778 ATAAATAAGTTTGCTTGTGATAGTCTTAAACTTAATCATCCTGAAACAGAGGTGAGAAAC 837 |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| Sbjct 782 ATAAATAAGTTTGCTTGTGATAGTTTTAGACATAATCATCCTGAAACAGAGGTGAGAAAT 841 Query 838 GAAGCCGCAGAAGATTTTCTAGCTCTTCTCAAAGAATGGAAAAGGCTCTGTGAGAAG-TT 896 ||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||| || Sbjct 842 GAAGCTGCAGAAGATTTTCTAATTCTCCTCAAAGAATGGAAAAGGCTCTGTGA-AAGGTT 900 Query 897 TTCTCTCGTTTCAAGCACCGAACCAGTGGAATCAATTTCTGAGTTAGAAGATGAAGAA-G 955 ||||||| |||||||||| |||||| ||||||||| ||||||||| |||||||||||| | Sbjct 901 TTCTCTCATTTCAAGCACTGAACCAATGGAATCAACTTCTGAGTTGGAAGATGAAGAAAG 960 Query 956 TTGAAGAAAATGATGACATAGATGAGGCAAGTACTGGTGCTG-AACTCGAACCTGGAGAG 1014 | || ||||||||||||||||||||||||||||||||| || ||||| | | |||||| Sbjct 961 T-GACGAAAATGATGACATAGATGAGGCAAGTACTGGTA-TGGAACTCTCAGCGGGAGAG 1018 Query 1015 TTTGAAGTAGAAAAGTTCCTTGGCATCATGTTTGGAGATCCTCAAGGCACAGGGGAAAAG 1074 ||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||||| Sbjct 1019 TTTGAAGTAGAAAAGTTTGTTGGCATCGTTTTTGGAGATCCTAAAGGCACAGGGGAAAAG 1078 Query 1075 ACACTTCAACTTA 1087 |||||||| |||| Sbjct 1079 ACACTTCATCTTA 1091 Score = 985 bits (533), Expect = 0.0 Identities = 683/754 (91%), Gaps = 15/754 (2%) Strand=Plus/Plus Query 1615 GATTTACAAGTTGGACGTATTCAAATGGAG-TTCCTTAAATTGGACAACGCTCTTACGCT 1673 |||||||||||||||| | |||||| |||| || ||| |||| ||||||||||||||||| Sbjct 1424 GATTTACAAGTTGGACTTGTTCAAAAGGAGCTT-CTTCAATTAGACAACGCTCTTACGCT 1482 Query 1674 GGCTGATGCTATTAGTGATCTGCCACCGGTGACAAATTATGTGGCAAATGATGTAATGGA 1733 |||||||||||||||||| || |||||||||||||||| || |||||||||||||| ||| Sbjct 1483 GGCTGATGCTATTAGTGACCTACCACCGGTGACAAATTCTGAGGCAAATGATGTAA-GGA 1541 Query 1734 -TTATAATGATGCTGCTCCTAAGACAGAGTTTGAGAACTTTATTAGCCTCAAAAGATCTG 1792 ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1542 ATTATAATGATGCTGCTCCTAAGACAGATTTTGAGAACTTTATTAGCCTTAAAAGATCTG 1601 Query 1793 AGACACTTTTACCCGCATTTGGTGGAGATCCGACACGCAGGTTGTTTGATCACCAACCCC 1852 ||||||| ||||||| || ||||||||||||| ||||||||||||||||||| || || | Sbjct 1602 AGACACTATTACCCGTATGTGGTGGAGATCCGGCACGCAGGTTGTTTGATCATCAGCCTC 1661 Query 1853 TCGTATTAGGAGATGATGACTTGGAAAGAGTTTCCTACATACCAAAACAGAAGGGGGCAA 1912 | | |||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1662 TTGAATTAAGAGATGACGACTTGGAAAGAATTTCCTACATACCAAAAAAGAAGGGGGCAA 1721 Query 1913 ACTATCGCGACATGCCTGGTGTTTTAGTTCACAACAACAAAGCGGAAATTAATCCT-AGG 1971 | | ||| || ||||||||||||||||||||||||||||||||| || |||| ||| ||| Sbjct 1722 ATTTTCGTGATATGCCTGGTGTTTTAGTTCACAACAACAAAGCGCAACTTAA-CCTTAGG 1780 Query 1972 TTT---CGAGCAAAGTTGAAATCTGGAAAAAATGTGGTCCCTGCTTATGCAATTTCATTC 2028 | ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1781 GTGAAGCGAGCAAAGTTAAAATCTGGAAAGAATGTGGTCCCTGCTTATGCAGTTTCATTC 1840 Query 2029 ATAAAAGGAAAATCAAAAAAGCCGTTTGGTAGACTT-TGG-GGTGATGAAATCGTTAACA 2086 ||||||||||||||||||||||| ||||||||| || ||| || || ||||| ||||||| Sbjct 1841 ATAAAAGGAAAATCAAAAAAGCCTTTTGGTAGA-TTGTGGTGG-GACGAAATAGTTAACA 1898 Query 2087 CTGTTGTGACAAGGGCTGAACCTCACAACCAGTGTGTAATCCATCCAATGCAAAACCGTG 2146 | |||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||| Sbjct 1899 CGGTTGTGACAAGGGCAGAACCTCACAACCAGTGCGTAATCCATCCAATGCAAGAGCGTG 1958 Query 2147 TGTTGTCTGTTCGTGAGAATGCGAGATTACAGGGGTTCCCTGATTGTTACAAGCTCTGTG 2206 |||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||| |||| Sbjct 1959 TGTTGTCTGTCCGTGAGAATGCCAGACTACAAGGGTTCCCTGATTGTTACAAGCTTTGTG 2018 Query 2207 GAACAATTAAGGAAAAGTACATCCAGGTTGGGAATGCTGTGGCAGTTCCTGTAGGGGTTG 2266 | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2019 GCTCAATTAAGGAAAAGTACATCCAGGTTGGGAATGCAGTGGCAGTTCCTGTAGGGGTTG 2078 Query 2267 CATTAGGATATGCCTTTGGTATGGCGAGTCAAGGACTGACGGATGATGAACCAGTAATCA 2326 | ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 2079 CGTTAGGATATGCATTTGGTATGGCGAGTCAAGGACTGACGGATGATGAGCCTGTAATCA 2138 Query 2327 AGCTGCCATTCAAGTATCCC-GAATGCATGCAGG 2359 ||||||| |||||||| ||| ||||||||||||| Sbjct 2139 AGCTGCCCTTCAAGTA-CCCTGAATGCATGCAGG 2171 Score = 468 bits (253), Expect = 1e-130 Identities = 306/332 (92%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 1215 GGGTACTGTCTACACAGTGTGCGGTGGGCC-CCCTTGCCAAGGGATCAGTGGGTATAACC 1273 ||||||||| ||| | |||||||||||||| ||| ||||||||||||||||| ||||||| Sbjct 1093 GGGTACTGTTTACTCTGTGTGCGGTGGGCCACCC-TGCCAAGGGATCAGTGGCTATAACC 1151 Query 1274 GGTATAGAAACAATGAAGCACCGCTTGAAGATCAGAAGAACCAGCAACTTTTGGTGTTTT 1333 ||| ||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| Sbjct 1152 GGTTTAGAAACAAACAAGCACCGCTTGAGGATAAGAAAAACCAGCAACTTTTGGTGTTTT 1211 Query 1334 TAGACATCATTGACTTCCTCAAGCCAAACTATGTGCTGATGGAAAATGTTGTAGACCTTC 1393 ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 1212 TAGACATCATTGACTTCCTCAAGCCAAGTTACGTGCTTATGGAAAATGTTGTAGACCTTC 1271 Query 1394 TTAGGTTTTCAAAGGGTTTCCTGGCACGTCATGCTGTAGCTAGCTTTGTTGCGATGAATT 1453 |||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| Sbjct 1272 TTAGGTTTTCAAAGGGTTACCTGGCACGTCATGCTGTGGCTAGCTTTGTTGCCATGAATT 1331 Query 1454 ACCAGACGCGGTTGGGCATGATGGCTGCTGGATCTTATGGGCTCCCTCAGCTTAGAAACA 1513 ||||||||||||||||||||||| |||||||||| || || ||||||||| ||||||||| Sbjct 1332 ACCAGACGCGGTTGGGCATGATGACTGCTGGATCCTACGGTCTCCCTCAGGTTAGAAACA 1391 Query 1514 GGGtttttttATGGGCTGCACAACCATCAGAG 1545 |||||||||||||||| ||||||||| ||||| Sbjct 1392 GGGTTTTTTTATGGGCCGCACAACCAACAGAG 1423 > Ahg907286 jgi|Araly1|907286|Al_scaffold_0002_367 Length=2199 Score = 204 bits (110), Expect = 3e-51 Identities = 239/301 (79%), Gaps = 10/301 (3%) Strand=Plus/Plus Query 2003 TGGTCCCTGCTTATGCAATTTCATTCATA-A-AAGGAAAATCAAAAAAGCCGTTTGGTAG 2060 |||| ||| ||||||||| || | ||| | | |||||||| |||||||| |||||| | Sbjct 1778 TGGTACCTAATTATGCAATCACA-T-ATAGAGATGGAAAATCTAAAAAGCCATTTGGTCG 1835 Query 2061 ACTTTGGGGT--GATGAAATCGTTAACACTGTTGTGACAAGGGCTGAACCTCACAACCAG 2118 |||| ||| ||||| || ||||||| || |||||||| || |||||||||||||| Sbjct 1836 --TTTGTGGTACGATGAGATTATTAACACGGTCGTGACAAGAGCACAACCTCACAACCAG 1893 Query 2119 TGTGTAATCCATCCAATGCAAAACCGTG-TGTTGTCTGTTCGTGAGAATGCGAGATTACA 2177 |||||| | || |||| ||||||||| | | || || | || || ||||| ||| |||| Sbjct 1894 TGTGTACTTCACCCAAAGCAAAACCGAGTTCTT-TCAGCCCGCGAAAATGCAAGACTACA 1952 Query 2178 GGGGTTCCCTGATTGTTACAAGCTCTGTGGAACAATTAAGGAAAAGTACATCCAGGTTGG 2237 || || |||||||| || | ||| | ||| | || | |||||||||||||||||||| Sbjct 1953 AGGATTTCCTGATTGCTATAGGCTTTACGGACCTGTTGATGAAAAGTACATCCAGGTTGG 2012 Query 2238 GAATGCTGTGGCAGTTCCTGTAGGGGTTGCATTAGGATATGCCTTTGGTATGGCGAGTCA 2297 ||||||||| || ||||| || |||||||| ||||||||||| ||||| ||||||||||| Sbjct 2013 GAATGCTGTTGCTGTTCCAGTCGGGGTTGCCTTAGGATATGCGTTTGGGATGGCGAGTCA 2072 Query 2298 A 2298 | Sbjct 2073 A 2073 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97777658915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5