BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80740.1

Length=2593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927425 jgi|Araly1|927425|scaffold_202986.1                       1221    0.0  
  Ahg907286 jgi|Araly1|907286|Al_scaffold_0002_367                     204    3e-51


> Ahg927425 jgi|Araly1|927425|scaffold_202986.1
Length=2673

 Score = 1221 bits (661),  Expect = 0.0
 Identities = 954/1093 (87%), Gaps = 30/1093 (3%)
 Strand=Plus/Plus

Query  1     ATGGCAGCGAGAAACAAACAAAAGAAACGCGCTGAGCCAGAGTCAGATCTGTGCTTCGCT  60
             ||||||| || ||||||||| | |||||||||||||||||||||||||||||| || |||
Sbjct  23    ATGGCAGTGAAAAACAAACAGATGAAACGCGCTGAGCCAGAGTCAGATCTGTGTTTTGCT  82

Query  61    GGCAAACCAATGTCTGTTGTGGAGTCGACGATTCGATGGCCTCATCGCTACCAATCCAAG  120
             || |||||| |||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct  83    GGGAAACCAGTGTCTGTTGTCGAGTCGATGATTCGATGGCCTCATCGCTACCCATCCAAG  142

Query  121   AAAACAAAGCTCCAAGCTCCGACCAAAAAACCTGCAAATAAGGGTGGCAAAAAAGAAGAT  180
             |||||||||||  |||||  |  |     | | || |  ||||||| | ||||||  || 
Sbjct  143   AAAACAAAGCTTGAAGCT--G--C----GA-CGGCGACGAAGGGTGAC-AAAAAG--GA-  189

Query  181   GAAGAGATAATAAAGCAAGCTAAATGCCACTTTGA-CAAAGCTTTGGTTGATGGAGTTCT  239
              || ||   ||||||| ||| ||| | ||||  || | ||||||||||||||||||||||
Sbjct  190   -AA-AG---ATAAAGCTAGCGAAACGTCACTACGAGC-AAGCTTTGGTTGATGGAGTTCT  243

Query  240   CATCAACCTAAACGACGATGTCTATGTCACGGGTCTACCAGGGAAGCTGAAATTCATTGC  299
             ||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||| 
Sbjct  244   CATCAACCTCAATGACGATGTCTACGTCACGGGTCTACCAGGGAAGCTGAATTTCATTGG  303

Query  300   AAAAGTTATCGAGCTCTTTGAAGCTGATGATGGGGTGCCGTATTGTCGCTTTCGATGGTA  359
             ||||||||| ||  | || ||||| |||||||||||||| || | |||  ||||||||| 
Sbjct  304   AAAAGTTATTGAAATGTTCGAAGCAGATGATGGGGTGCCTTACTCTCGGATTCGATGGTT  363

Query  360   CTATC-GGCCTGAAGATACTTTAATCGAAAGATTTTCCCACCTTGTGCAACCAAAGAGAG  418
              || | | || || |||||||| |||||||||||| || | |||||||||  |||||| |
Sbjct  364   TTA-CAGACCCGATGATACTTTGATCGAAAGATTTGCCGAACTTGTGCAAAAAAAGAGGG  422

Query  419   TGTTTCTCTCAAATGATGAGAATGACAATCCTCTCACCTGCATCTGGTCAAAAGTCAACA  478
             ||||||| ||||||| |||| | || ||||||||||||||||| |  || ||||||||||
Sbjct  423   TGTTTCTATCAAATGTTGAGGACGATAATCCTCTCACCTGCATTTATTCGAAAGTCAACA  482

Query  479   TCGCTAAAGTCCCATTACCTAAGATTACCTCCAGAATCGAGCAAAGGGTTATTCCTCCTT  538
             ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct  483   TCGCTAAAGTCCCATTACCAAAGATTACCTCCAGAATCGAGCAAAGGGTTATTCCTCCAT  542

Query  539   GTGATTACTACTACGATATGAAGTACGAAGTTCCTTATCTCAACTTTACAAGTGCAGATG  598
             |||| || ||||| ||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct  543   GTGACTATTACTATGATATGAAGTACGAAGTGCCATATCTGAATTTTACAAGTGCAGATG  602

Query  599   ATGGTAGTGATGCCTCATCAAGTCTTTCAAGTGACTCTGCCTTGAATTGCTTTGAAAATC  658
             ||| || || ||| ||||||| |||||||||||| || |||| |||||||||||||| ||
Sbjct  603   ATGATACTGCTGCGTCATCAACTCTTTCAAGTGATTCCGCCTCGAATTGCTTTGAAACTC  662

Query  659   TCCACAAGGATGAAAAAT-TCTTATTGGATCTATACAGTGGGTGCGGAGCGATGTCCACA  717
             ||||||| |||||||||| | ||||||||||| |||||||| ||||||||||||||||||
Sbjct  663   TCCACAAAGATGAAAAATAT-TTATTGGATCTGTACAGTGGATGCGGAGCGATGTCCACA  721

Query  718   GGTTTCTGCATGGGAGCTTCCATATCAGGAGTAAAATTGATTACGAAATGGTCTGTGGAT  777
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  722   GGTTTCTGCATGGGAGCTTCCATAGCAGGAGTAAAATTGATTACGAAATGGTCTGTGGAT  781

Query  778   ATAAATAAGTTTGCTTGTGATAGTCTTAAACTTAATCATCCTGAAACAGAGGTGAGAAAC  837
             |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| 
Sbjct  782   ATAAATAAGTTTGCTTGTGATAGTTTTAGACATAATCATCCTGAAACAGAGGTGAGAAAT  841

Query  838   GAAGCCGCAGAAGATTTTCTAGCTCTTCTCAAAGAATGGAAAAGGCTCTGTGAGAAG-TT  896
             ||||| |||||||||||||||  ||| |||||||||||||||||||||||||| ||| ||
Sbjct  842   GAAGCTGCAGAAGATTTTCTAATTCTCCTCAAAGAATGGAAAAGGCTCTGTGA-AAGGTT  900

Query  897   TTCTCTCGTTTCAAGCACCGAACCAGTGGAATCAATTTCTGAGTTAGAAGATGAAGAA-G  955
             ||||||| |||||||||| |||||| ||||||||| ||||||||| |||||||||||| |
Sbjct  901   TTCTCTCATTTCAAGCACTGAACCAATGGAATCAACTTCTGAGTTGGAAGATGAAGAAAG  960

Query  956   TTGAAGAAAATGATGACATAGATGAGGCAAGTACTGGTGCTG-AACTCGAACCTGGAGAG  1014
             | || |||||||||||||||||||||||||||||||||  || |||||  | | ||||||
Sbjct  961   T-GACGAAAATGATGACATAGATGAGGCAAGTACTGGTA-TGGAACTCTCAGCGGGAGAG  1018

Query  1015  TTTGAAGTAGAAAAGTTCCTTGGCATCATGTTTGGAGATCCTCAAGGCACAGGGGAAAAG  1074
             |||||||||||||||||  |||||||| | |||||||||||| |||||||||||||||||
Sbjct  1019  TTTGAAGTAGAAAAGTTTGTTGGCATCGTTTTTGGAGATCCTAAAGGCACAGGGGAAAAG  1078

Query  1075  ACACTTCAACTTA  1087
             |||||||| ||||
Sbjct  1079  ACACTTCATCTTA  1091


 Score =  985 bits (533),  Expect = 0.0
 Identities = 683/754 (91%), Gaps = 15/754 (2%)
 Strand=Plus/Plus

Query  1615  GATTTACAAGTTGGACGTATTCAAATGGAG-TTCCTTAAATTGGACAACGCTCTTACGCT  1673
             |||||||||||||||| | |||||| |||| || ||| |||| |||||||||||||||||
Sbjct  1424  GATTTACAAGTTGGACTTGTTCAAAAGGAGCTT-CTTCAATTAGACAACGCTCTTACGCT  1482

Query  1674  GGCTGATGCTATTAGTGATCTGCCACCGGTGACAAATTATGTGGCAAATGATGTAATGGA  1733
             |||||||||||||||||| || |||||||||||||||| || |||||||||||||| |||
Sbjct  1483  GGCTGATGCTATTAGTGACCTACCACCGGTGACAAATTCTGAGGCAAATGATGTAA-GGA  1541

Query  1734  -TTATAATGATGCTGCTCCTAAGACAGAGTTTGAGAACTTTATTAGCCTCAAAAGATCTG  1792
              ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct  1542  ATTATAATGATGCTGCTCCTAAGACAGATTTTGAGAACTTTATTAGCCTTAAAAGATCTG  1601

Query  1793  AGACACTTTTACCCGCATTTGGTGGAGATCCGACACGCAGGTTGTTTGATCACCAACCCC  1852
             ||||||| ||||||| || ||||||||||||| ||||||||||||||||||| || || |
Sbjct  1602  AGACACTATTACCCGTATGTGGTGGAGATCCGGCACGCAGGTTGTTTGATCATCAGCCTC  1661

Query  1853  TCGTATTAGGAGATGATGACTTGGAAAGAGTTTCCTACATACCAAAACAGAAGGGGGCAA  1912
             | | |||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  1662  TTGAATTAAGAGATGACGACTTGGAAAGAATTTCCTACATACCAAAAAAGAAGGGGGCAA  1721

Query  1913  ACTATCGCGACATGCCTGGTGTTTTAGTTCACAACAACAAAGCGGAAATTAATCCT-AGG  1971
             | | ||| || ||||||||||||||||||||||||||||||||| || |||| ||| |||
Sbjct  1722  ATTTTCGTGATATGCCTGGTGTTTTAGTTCACAACAACAAAGCGCAACTTAA-CCTTAGG  1780

Query  1972  TTT---CGAGCAAAGTTGAAATCTGGAAAAAATGTGGTCCCTGCTTATGCAATTTCATTC  2028
              |    ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct  1781  GTGAAGCGAGCAAAGTTAAAATCTGGAAAGAATGTGGTCCCTGCTTATGCAGTTTCATTC  1840

Query  2029  ATAAAAGGAAAATCAAAAAAGCCGTTTGGTAGACTT-TGG-GGTGATGAAATCGTTAACA  2086
             ||||||||||||||||||||||| ||||||||| || ||| || || ||||| |||||||
Sbjct  1841  ATAAAAGGAAAATCAAAAAAGCCTTTTGGTAGA-TTGTGGTGG-GACGAAATAGTTAACA  1898

Query  2087  CTGTTGTGACAAGGGCTGAACCTCACAACCAGTGTGTAATCCATCCAATGCAAAACCGTG  2146
             | |||||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||
Sbjct  1899  CGGTTGTGACAAGGGCAGAACCTCACAACCAGTGCGTAATCCATCCAATGCAAGAGCGTG  1958

Query  2147  TGTTGTCTGTTCGTGAGAATGCGAGATTACAGGGGTTCCCTGATTGTTACAAGCTCTGTG  2206
             |||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||| ||||
Sbjct  1959  TGTTGTCTGTCCGTGAGAATGCCAGACTACAAGGGTTCCCTGATTGTTACAAGCTTTGTG  2018

Query  2207  GAACAATTAAGGAAAAGTACATCCAGGTTGGGAATGCTGTGGCAGTTCCTGTAGGGGTTG  2266
             |  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  2019  GCTCAATTAAGGAAAAGTACATCCAGGTTGGGAATGCAGTGGCAGTTCCTGTAGGGGTTG  2078

Query  2267  CATTAGGATATGCCTTTGGTATGGCGAGTCAAGGACTGACGGATGATGAACCAGTAATCA  2326
             | ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  2079  CGTTAGGATATGCATTTGGTATGGCGAGTCAAGGACTGACGGATGATGAGCCTGTAATCA  2138

Query  2327  AGCTGCCATTCAAGTATCCC-GAATGCATGCAGG  2359
             ||||||| |||||||| ||| |||||||||||||
Sbjct  2139  AGCTGCCCTTCAAGTA-CCCTGAATGCATGCAGG  2171


 Score =  468 bits (253),  Expect = 1e-130
 Identities = 306/332 (92%), Gaps = 2/332 (1%)
 Strand=Plus/Plus

Query  1215  GGGTACTGTCTACACAGTGTGCGGTGGGCC-CCCTTGCCAAGGGATCAGTGGGTATAACC  1273
             ||||||||| ||| | |||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct  1093  GGGTACTGTTTACTCTGTGTGCGGTGGGCCACCC-TGCCAAGGGATCAGTGGCTATAACC  1151

Query  1274  GGTATAGAAACAATGAAGCACCGCTTGAAGATCAGAAGAACCAGCAACTTTTGGTGTTTT  1333
             ||| |||||||||  ||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct  1152  GGTTTAGAAACAAACAAGCACCGCTTGAGGATAAGAAAAACCAGCAACTTTTGGTGTTTT  1211

Query  1334  TAGACATCATTGACTTCCTCAAGCCAAACTATGTGCTGATGGAAAATGTTGTAGACCTTC  1393
             |||||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||
Sbjct  1212  TAGACATCATTGACTTCCTCAAGCCAAGTTACGTGCTTATGGAAAATGTTGTAGACCTTC  1271

Query  1394  TTAGGTTTTCAAAGGGTTTCCTGGCACGTCATGCTGTAGCTAGCTTTGTTGCGATGAATT  1453
             |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct  1272  TTAGGTTTTCAAAGGGTTACCTGGCACGTCATGCTGTGGCTAGCTTTGTTGCCATGAATT  1331

Query  1454  ACCAGACGCGGTTGGGCATGATGGCTGCTGGATCTTATGGGCTCCCTCAGCTTAGAAACA  1513
             ||||||||||||||||||||||| |||||||||| || || ||||||||| |||||||||
Sbjct  1332  ACCAGACGCGGTTGGGCATGATGACTGCTGGATCCTACGGTCTCCCTCAGGTTAGAAACA  1391

Query  1514  GGGtttttttATGGGCTGCACAACCATCAGAG  1545
             |||||||||||||||| ||||||||| |||||
Sbjct  1392  GGGTTTTTTTATGGGCCGCACAACCAACAGAG  1423


> Ahg907286 jgi|Araly1|907286|Al_scaffold_0002_367
Length=2199

 Score =  204 bits (110),  Expect = 3e-51
 Identities = 239/301 (79%), Gaps = 10/301 (3%)
 Strand=Plus/Plus

Query  2003  TGGTCCCTGCTTATGCAATTTCATTCATA-A-AAGGAAAATCAAAAAAGCCGTTTGGTAG  2060
             |||| |||  |||||||||  || | ||| | | |||||||| |||||||| |||||| |
Sbjct  1778  TGGTACCTAATTATGCAATCACA-T-ATAGAGATGGAAAATCTAAAAAGCCATTTGGTCG  1835

Query  2061  ACTTTGGGGT--GATGAAATCGTTAACACTGTTGTGACAAGGGCTGAACCTCACAACCAG  2118
               |||| |||  ||||| ||  ||||||| || |||||||| ||  ||||||||||||||
Sbjct  1836  --TTTGTGGTACGATGAGATTATTAACACGGTCGTGACAAGAGCACAACCTCACAACCAG  1893

Query  2119  TGTGTAATCCATCCAATGCAAAACCGTG-TGTTGTCTGTTCGTGAGAATGCGAGATTACA  2177
             |||||| | || |||| ||||||||| | | || || |  || || ||||| ||| ||||
Sbjct  1894  TGTGTACTTCACCCAAAGCAAAACCGAGTTCTT-TCAGCCCGCGAAAATGCAAGACTACA  1952

Query  2178  GGGGTTCCCTGATTGTTACAAGCTCTGTGGAACAATTAAGGAAAAGTACATCCAGGTTGG  2237
              || || |||||||| || | ||| |  ||| |  || | ||||||||||||||||||||
Sbjct  1953  AGGATTTCCTGATTGCTATAGGCTTTACGGACCTGTTGATGAAAAGTACATCCAGGTTGG  2012

Query  2238  GAATGCTGTGGCAGTTCCTGTAGGGGTTGCATTAGGATATGCCTTTGGTATGGCGAGTCA  2297
             ||||||||| || ||||| || |||||||| ||||||||||| ||||| |||||||||||
Sbjct  2013  GAATGCTGTTGCTGTTCCAGTCGGGGTTGCCTTAGGATATGCGTTTGGGATGGCGAGTCA  2072

Query  2298  A  2298
             |
Sbjct  2073  A  2073



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 97777658915


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5