BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80760.1 Length=1212 Score E Sequences producing significant alignments: (Bits) Value Ahg477170 jgi|Araly1|477170|fgenesh2_kg.2__2300__AT1G80760.1 1581 0.0 Ahg887390 jgi|Araly1|887390|Al_scaffold_0627_1 1179 0.0 > Ahg477170 jgi|Araly1|477170|fgenesh2_kg.2__2300__AT1G80760.1 Length=1089 Score = 1581 bits (856), Expect = 0.0 Identities = 950/995 (95%), Gaps = 7/995 (1%) Strand=Plus/Plus Query 127 TAAAAACAATCATAGCAAAAACATATATCCTCAAATT-A-AT-TAGATCTCATCTATCTC 183 ||||||||||||||||||||||||||||||||||||| | || | ||||| ||| |||| Sbjct 77 TAAAAACAATCATAGCAAAAACATATATCCTCAAATTAAGATCT-CATCTC-TCTCTCTC 134 Query 184 TACCCTCGACATGGATCATGAGGAAATTCCATCCACGCCCTCAACGCCGGCGACAACCCC 243 || |||||| ||||||||||||||||||||||| | ||||||||||||||| |||||||| Sbjct 135 TAGCCTCGATATGGATCATGAGGAAATTCCATCAATGCCCTCAACGCCGGCTACAACCCC 194 Query 244 GGGGACTCCAGGAGCGCCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGG 303 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 GGGGACACCAGGAGCACCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGG 254 Query 304 TAGATACACACCAAAGTCACTTCTCAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATG 363 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 255 TAAATACACACCAAAGTCACTTCTAAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATG 314 Query 364 GGCTCTTGAAGATGGAAGACTCCCTCCGGTCACTTGCTCTCTCCCTCCCCCTAACGTTTC 423 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || Sbjct 315 GGCTCTTGAAGATGGAAGACTCCCTCCGGTCTCTTGCTCTCTCCCTCCCCCTAATGTCTC 374 Query 424 CCTCTACCGCAAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTGATATTCGCCGGAAC 483 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 375 CCTCTACCGCAAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTAATATTCGCTGGAAC 434 Query 484 AGCGACGGCGATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGC 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 435 AGCGACGGCGATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGC 494 Query 544 CTCGGCTGGTTTGGCGGTTATGATCGTTATATTATCGACCGGTCACATCTCCGGGGCACA 603 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || Sbjct 495 GTCGGCTGGTTTGGCGGTTATGATCGTTATTTTATCGACTGGTCACATATCCGGGGCGCA 554 Query 604 TCTCAATCCGGCTGTAACCATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGT 663 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 555 TCTCAATCCGGCTGTCACTATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGT 614 Query 664 GCCGGTGTATATCGGAGCTCAGGTGATGGCCTCCGTGAGTGCGGCGTTTGCACTGAAAGC 723 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 615 GCCGGTGTACATCGGAGCTCAGGTGATGGCCTCCGTGTGTGCGGCGTTTGCACTGAAAGC 674 Query 724 AGTGTTTGAACCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTCAGCCAAG- 782 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 675 AGTGTTTGAACCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTAAGCCAAGC 734 Query 783 CTTTCGCCTTGGAATTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCA 842 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 735 CTTT-GCCTTGGAGTTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCA 793 Query 843 CCGACACGAGAGCTGTGGGAGAGTTGGCGGGAATTGCCGTAGGAGCAACGGTCATGCTTA 902 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 794 CCGACACGAGAGCTGTGGGAGAGTTGGCGGGAATTGCGGTAGGAGCAACGGTCATGCTTA 853 Query 903 ACATACTTATAGCTGGACCTGCAACTTCTGCTTCGATGAACCCTGTAAGAACACTGGGTC 962 ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||| Sbjct 854 ACATACTCATAGCTGGACCAGCAACTTCTGCTTCGATGAATCCTGTAAGAACACTAGGTC 913 Query 963 CAGCCATTGCAGCAAACAATTACAGAGCTATTTGGGTTTACCTCACTGCCCCCATTCTTG 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 914 CAGCCATTGCAGCAAACAATTACAGAGCTATTTGGGTTTACCTCACTGCCCCGATTCTTG 973 Query 1023 GAGCGTTAATCGGAGCAGGTACATACACAATTGTCAAGTTGCCAGAGGAAGATGAAGCAC 1082 | ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 974 GCGCGTTAATCGGAGCAGGAACATACACGATTGTGAAGTTGCCAGAGGAAGATGAAGCAC 1033 Query 1083 CCAAAGAGAGGAGGAGCTTCAGAAGATGAAAAACA 1117 ||||||||||||||||||||||||||||||| ||| Sbjct 1034 CCAAAGAGAGGAGGAGCTTCAGAAGATGAAAGACA 1068 > Ahg887390 jgi|Araly1|887390|Al_scaffold_0627_1 Length=729 Score = 1179 bits (638), Expect = 0.0 Identities = 697/726 (96%), Gaps = 2/726 (0%) Strand=Plus/Plus Query 194 ATGGATCATGAGGAAATTCCATCCACGCCCTCAACGCCGGCGACAACCCCGGGGACTCCA 253 ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||| Sbjct 1 ATGGATCATGAGGAAATTCCATCAATGCCCTCAACGCCGGCTACAACCCCGGGGACACCA 60 Query 254 GGAGCGCCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGGTAGATACACA 313 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 GGAGCACCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGGTAAATACACA 120 Query 314 CCAAAGTCACTTCTCAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATGGGCTCTTGAA 373 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCAAAGTCACTTCTAAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATGGGCTCTTGAA 180 Query 374 GATGGAAGACTCCCTCCGGTCACTTGCTCTCTCCCTCCCCCTAACGTTTCCCTCTACCGC 433 ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| Sbjct 181 GATGGAAGACTCCCTCCGGTCTCTTGCTCTCTCCCTCCCCCTAATGTCTCCCTCTACCGC 240 Query 434 AAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTGATATTCGCCGGAACAGCGACGGCG 493 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 241 AAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTAATATTCGCTGGAACAGCGACGGCG 300 Query 494 ATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGCCTCGGCTGGT 553 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 301 ATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGCGTCGGCTGGT 360 Query 554 TTGGCGGTTATGATCGTTATATTATCGACCGGTCACATCTCCGGGGCACATCTCAATCCG 613 |||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||| Sbjct 361 TTGGCGGTTATGATCGTTATTTTATCGACTGGTCACATATCCGGGGCGCATCTCAATCCG 420 Query 614 GCTGTAACCATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGTGCCGGTGTAT 673 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GCTGTCACTATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGTGCCGGTGTAC 480 Query 674 ATCGGAGCTCAGGTGATGGCCTCCGTGAGTGCGGCGTTTGCACTGAAAGCAGTGTTTGAA 733 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 ATCGGAGCTCAGGTGATGGCCTCCGTGTGTGCGGCGTTTGCACTGAAAGCAGTGTTTGAA 540 Query 734 CCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTCAGCCAAGC-TTTCGCCTT 792 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| Sbjct 541 CCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTAAGCCAAGCCTTT-GCCTT 599 Query 793 GGAATTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCACCGACACGAG 852 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GGAGTTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCACCGACACGAG 659 Query 853 AGCTGTGGGAGAGTTGGCGGGAATTGCCGTAGGAGCAACGGTCATGCTTAACATACTTAT 912 ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct 660 AGCTGTGGGAGAGCTGGCGGGAATTGCGGTAGGAGCAACGGTCATGCTTAATATACTCAT 719 Query 913 AGCTGG 918 |||||| Sbjct 720 AGCTGG 725 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45251902479 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5