BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80830.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927413 jgi|Araly1|927413|scaffold_202974.1 2558 0.0
Ahg927384 jgi|Araly1|927384|scaffold_202945.1 1434 0.0
Ahg930903 jgi|Araly1|930903|scaffold_303360.1 505 6e-142
Ahg920502 jgi|Araly1|920502|scaffold_101783.1 165 1e-39
> Ahg927413 jgi|Araly1|927413|scaffold_202974.1
Length=1621
Score = 2558 bits (1385), Expect = 0.0
Identities = 1560/1642 (95%), Gaps = 22/1642 (1%)
Strand=Plus/Plus
Query 31 GATTAGGAAGAGAGAGACGGCGATGGCGGCTACAGGATCTGGACGGTCTCAATTCATTTC 90
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTAGG-A-AGAGAGACGGCGATGGCGGCTACAGGATCTGGACGGTCTCAATTCATTTC 58
Query 91 CAGTTCCGGCGGTAACCGAAGCTTCTCCAATTCTCCACTCATCGAGAACTCTGATTCTAA 150
||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 59 CAGCTCCGGCGGTAACCGAAG------------------CATCGAGAACTCTGATTCTAA 100
Query 151 TCAGATTATTGTCTCTGAGAAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGG 210
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 101 TCAGATTATTGTCTCTGAGAAGAAGAGCTGGAAGAATTTCTTCGCTTACTTAGGCCCTGG 160
Query 211 TTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTTTGAGACTGATCTGCAAGCTGG 270
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 161 TTTTCTTGTTTCAATCGCATATATTGATCCTGGAAATTTTGAGACTGATCTGCAATCTGG 220
Query 271 AGCACACTACAAGTATGAATTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGT 330
|||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 221 AGCACAATACAAGTATGAGTTACTTTGGATCATATTGGTGGCCTCGTGTGCAGCTTTGGT 280
Query 331 GATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGGAAAACATTTGGCTGAGCAATG 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGGAAAACATTTGGCTGAGCAATG 340
Query 391 TAGAGCCGAGTACTCCAAAGTTCCAAACTTTATGTTATGGGTCGTTGCTGAAATTGCAGT 450
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 341 TAGAGCAGAGTACTCCAAAGTTCCAAACTTTATGTTATGGGTCGTTGCAGAAATTGCAGT 400
Query 451 AGTTGCTTGTGACATACCGGAAGTTATCGGAACAGCTTTTGCTCTGAACATGCTCTTTAG 510
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AGTCGCTTGTGACATACCTGAAGTTATCGGAACAGCTTTTGCTCTGAACATGCTCTTTAG 460
Query 511 CATACCGGTGTGGATCGGTGTTCTTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACT 570
||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||| ||
Sbjct 461 CATACCGGTGTGGATTGGTGTTCTTTTGACAGGCTTCAGTACTCTGATTCTTCTCGCGCT 520
Query 571 TCAAAAATACGGGGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGC 630
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 521 TCAAAAATACGGGGTGAGAAAGTTGGAGTTCTTGATTGCGTTTCTTGTGTTCACAATTGC 580
Query 631 AATATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCAGACCCAGGAGAAGTCCTACATGG 690
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TATATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCAGACCCAGGAGAAGTCCTACATGG 640
Query 691 TCTCTTTGTTCCTCAACTTAAAGGAAATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGG 750
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 641 TCTCTTTGTTCCTCAACTTAAAGGAAATGGTGCAACTGGTCTTGCAATCTCTTTGCTCGG 700
Query 751 AGCCATGGTTATGCCGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAAT 810
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 701 AGCCATGGTTATGCCGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCCAGGAAAAT 760
Query 811 CCCTCGTTCCGCTTCTGGTATCAAGGAAGCTTGCAGGTTTTACTTGATAGAAAGTGGATT 870
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 761 CCCTCGTTCCACTTCTGGTATCAAGGAAGCTTGCAGGTTTTACTTGATAGAAAGCGGATT 820
Query 871 GGCTCTAATGGTGGCCTTTCTCATAAACGTCTCTGTAATATCAGTAAGCGGGGCTGTTTG 930
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 821 GGCTCTAATGGTGGCCTTTCTCATAAATGTCTCTGTGATATCAGTAAGTGGGGCTGTTTG 880
Query 931 TAATGCCCCCAACTTAAGCCCTGAAGATCGAGCTAATTGTGAGGATTTGGACTTAAACAA 990
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TAATGCCCCTAACTTAAGCCCTGAAGATCGAGCTAATTGTGAGGATTTGGACTTAAACAA 940
Query 991 GGCTTCGTTTCTGCTACGGAACGTTGTGGGAAAATGGAGCTCAAAGCTATTTGCAATCGC 1050
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 941 GGCTTCGTTTCTGCTACGGAACGTTGTGGGAAAGTGGAGCTCAAAGCTATTTGCAATAGC 1000
Query 1051 GCTTCTTGCTTCTGGTCAGAGCTCGACGATAACCGGAACTTATGCTGGACAATATGTAAT 1110
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1001 GCTTCTTGCCTCTGGTCAGAGCTCGACGATAACAGGAACTTATGCTGGACAATACGTAAT 1060
Query 1111 GCAGGGCTTTCTTGATCTCAGACTCGAGCCATGGCTCAGAAACTTACTAACAAGATGTTT 1170
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1061 GCAGGGCTTTCTTGATCTAAGACTCGAGCCATGGCTCAGAAACTTACTAACAAGATGCTT 1120
Query 1171 AGCTATAATCCCGAGTCTAATTGTTGCTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTT 1230
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1121 AGCTATAATCCCGAGTCTAATTGTTGCTCTCATTGGCGGTTCAGCTGGAGCTGGAAAGTT 1180
Query 1231 AATCATCATTGCCTCGATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCT 1290
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1181 AATCATCATTGCCTCGATGATCTTATCCTTTGAGCTCCCGTTCGCGTTGGTTCCTCTTCT 1240
Query 1291 CAAATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGATTACAGC 1350
||| ||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1241 CAAGTTCACTAGCTGCAAAACCAAGATGGGTTCACACGTCAACCCAATGGCGATTTCAGC 1300
Query 1351 TTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATATACTATCTAGTAAGCAG 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 TTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATATACTATCTAGTAAGCAG 1360
Query 1411 TTTCATCAAACTGCTTATCCACAGTCATATGAAGCTTATCCTCGTCGTCTTCTGTGGAAT 1470
|| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1361 TTACATCAAACTGCTTATCCATAGTCATATGAAGCTTGCCCTCGTCGTCTTCTGTGGAAT 1420
Query 1471 TCTTGGGTTCGCAGGCATTGCTCTCTATTTAGCCGCCATAGCTTACCTTGTCTTCCGGAA 1530
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1421 TCTTGGGTTCGCAGTCATTGCTCTCTATTTAGCTGCCATAGCTTACCTTGTCTTCCGGAA 1480
Query 1531 AAACAGAGTAGCCACTTCTCTTCTTATTTCAAGAGACTCACAAAATGTGGAGACACTTCC 1590
|||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1481 AAACAGAGAAGCCACTCCTCTTCTTGCATCAAGAAACTCACAAAATGTGGAGACACTTCC 1540
Query 1591 AAGACAGGACATTGTCAACATGCAGTTACCATGTAGAGTATCTACCTCCGATGTTGACTG 1650
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1541 AAGACAGGACATTGTCAACATGCAGTTACCATGTAGAGTGTCTACCTCCGATGTTGATTG 1600
Query 1651 AGTCAT-CATTAAGCTTAGGAT 1671
||| || ||| || || |||||
Sbjct 1601 AGT-ATTCATAAAACTGAGGAT 1621
> Ahg927384 jgi|Araly1|927384|scaffold_202945.1
Length=1423
Score = 1434 bits (776), Expect = 0.0
Identities = 982/1082 (91%), Gaps = 12/1082 (1%)
Strand=Plus/Plus
Query 476 ATCGGAACAGCTTTTGCTCTGAACATGCTCTTTAGCATACCGGTGTGGATCGGTGTTCTT 535
|||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| | |
Sbjct 270 ATCGGAACCGCTTTTGCTCTGAACATGCTCTTTAGCATGCCGGTATGGATTGGTGTGCCT 329
Query 536 CTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGGTGAGAAAGCTG 595
||||||||||||||||| || |||||||| | ||||||||||||||||||||||| ||
Sbjct 330 CTGACAGGCTTAAGTACTATGGTTCTTCTCAAAATTCAAAAATACGGGGTGAGAAAGTTG 389
Query 596 GAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATATGCTTCTTTGTTGAGCTTCAT 655
||||||||||| || ||||||| |||||||| || ||| |||||||||||||||||||
Sbjct 390 GAGTTCTTGATTGCAATTCTTGTATTCACAATGGCTATAAGCTTCTTTGTTGAGCTTCAC 449
Query 656 TACTCAAAGCCAGACCCAGGAGAAGTCCTACATGGTCTCTTTGTTCCTCAACTTAAAGGA 715
||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 450 TACTCAAAGCCCGACCCAGGAGAAATCCTACATGGTCTCTTTGTTCCTCAACTGAAAGGA 509
Query 716 AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCGCATAATCTC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCGCATAATCTC 569
Query 776 TTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAA-ATCCCTCGTTCCGCTTCTGGTATCAA 834
|||||||||||||||||||||||||| || ||| |||||||||||| || |||| |||||
Sbjct 570 TTCCTCCACTCGGCCTTGGTTCTCTCTAG-AAATATCCCTCGTTCCACTACTGGCATCAA 628
Query 835 GGAAGCTTGCAGGTTTTACTTGATAGAAAGTGGATTGGCTCTAATGGTGGCCTTTCTCAT 894
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 629 GAAAGCTTGCAGGTTTTACTTGATAGAAAGCGGATTGGCTCTAATGGTGGCATTTCTCAT 688
Query 895 AAACGTCTCTGTAATATCAGTAAGCGGGGCTGTTTGTAATGCCCCCAACTTAAGCCCTGA 954
|||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 689 AAACGTCTCTGTGATATCAGTAAGTGGTGCTGTTTGTAATGCCCCGAACTTAAGCCCTGA 748
Query 955 AGATCGAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGGAACGT 1014
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 749 AGATCGAGCTAATTGTGAGAATTTGGACTTAAACAAGGCTTCGTTTCTGCTCCGGAATGT 808
Query 1015 TGTGGGAAAATGGAGCTCAAAGCTATTTGCAATCGCGCTTCTTGCTTCTGGTCAGAGCTC 1074
| |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 809 TTTGGGGAAATGGAGCTCAAAGCTATTTGCGATTGCGCTTCTTGCTTCTGGTCAGAGCTC 868
Query 1075 GACGATAACCGGAACTTATGCTGGACAATATGTAATGCAGGGCTTTCTTGATCTCAGACT 1134
||||||||| |||||||||||||||||||| ||||||| || |||||||| || | |||
Sbjct 869 GACGATAACAGGAACTTATGCTGGACAATACATAATGCAAGGATTTCTTGACCTAAAACT 928
Query 1135 CGAGCCATGGCTCAGAAACTTACTAACAAGATGTTTAGCTATAATCCCGAGTCTAATTGT 1194
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 929 CAAGCCATGGCTCAGAAACTTACTAACACGATGTTTAGCTATAATCCCGAGTCTAATCGT 988
Query 1195 TGCTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGATGATCTT 1254
| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 989 TTCTCTCATTGGTGGTTCTGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGATGATCTT 1048
Query 1255 ATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTC-AAATTCACAAGTTGCAAAACCA 1313
||||||||||||||||| ||| ||||||| || || ||||| ||||| ||||||||||
Sbjct 1049 GTCCTTTGAGCTCCCGTTCGCGCTGGTTCCCCT-CTTGAAATTTACAAGCTGCAAAACCA 1107
Query 1314 AGATGGGTTCACATGTCAACCCAATG-GCGATTACAGCTTTGACTTGGGTCATTGG-TGG 1371
||||||||||||| |||||| |||| | ||| ||||||||||||||| | ||||| |
Sbjct 1108 AGATGGGTTCACACGTCAACTCAATCTG-GATCACAGCTTTGACTTGGATTATTGGATTA 1166
Query 1372 TTTAATCATGGGAATAAACATATACTATCTAGTAAGCAGTTTCATCAAACTGCTTATCCA 1431
| | ||||||||||||||||||||||| |||||| |||||||||||| |||||| ||||
Sbjct 1167 CTCA-TCATGGGAATAAACATATACTATATAGTAACCAGTTTCATCAAGCTGCTTCTCCA 1225
Query 1432 CAGTCATATGAAGCTTATC-CTCGTCGTCTTCTGTGGAATTCTTGGGTTCGCAGGCATTG 1490
||||||||||||||| || | |||| |||||||||||||| ||||||||||||| ||||
Sbjct 1226 TAGTCATATGAAGCTTGTCGC-CGTCATCTTCTGTGGAATTATTGGGTTCGCAGGTATTG 1284
Query 1491 CTCTCTATTTAGCCG-CCATAGCTTACCTTGTCTTCCGGAAAAACAGAGTAGCCACTTCT 1549
|| |||||||||| | ||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 1285 CTATCTATTTAGC-GTCCATAGCTTACCTTGTCTTGAGGAAAAACAGAGAAGCCACTCCT 1343
Query 1550 CT 1551
||
Sbjct 1344 CT 1345
> Ahg930903 jgi|Araly1|930903|scaffold_303360.1
Length=475
Score = 505 bits (273), Expect = 6e-142
Identities = 393/450 (87%), Gaps = 12/450 (3%)
Strand=Plus/Plus
Query 1089 CTTATGCTGGACAATATGTAATGCAGGGCTTTCTTGATCTCAGACTCGAGCCATGGCTCA 1148
||||||| |||||||| ||||||| | |||||||| || | |||| ||||||||||||
Sbjct 1 CTTATGCCGGACAATACATAATGCAAAGATTTCTTGACCTAAAACTCAAGCCATGGCTCA 60
Query 1149 GAAACTTACTAACAAGATGTTTAGCTATAATCCCGAGTCTAATTGTTGCTCTCATCGGTG 1208
|||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 61 GAAACTTACTAACACGATGTTTAGCTATAATCCCGAGTCTAATCGTTTCTCTCATTGGTG 120
Query 1209 GTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGATGATCTTATCCTTTGAGCTCC 1268
|||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 121 GTTCTGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGGTGATCTTGTCCTTTGAGCTCC 180
Query 1269 CGTTTGCGTTGGTTCCTCTTCTC-AAAT-TCACAAGTTGCAAAACCAAGATGGGTTCACA 1326
|||| ||| ||||||| || || |||| | ||||| |||||||||||||||||||||||
Sbjct 181 CGTTCGCGCTGGTTCCCCT-CTTGAAATGT-ACAAGCTGCAAAACCAAGATGGGTTCACA 238
Query 1327 TGTCAACCCAATG-GCGATTACAGCTTTGACTTGGGTCATTGG-TGGTTTAATCATGGGA 1384
|||||| |||| | ||| ||||||||||||||| | ||||| | | | ||||||||
Sbjct 239 CGTCAACTCAATTTG-GATCACAGCTTTGACTTGGATTATTGGATTACTCA-TCATGGGA 296
Query 1385 ATAAACATATACTATCTAGTAAGCAGTTTCATCAAACTGCTTATCCACAGTCATATGAAG 1444
||||||||||||||| |||||| |||||||||||| |||||| |||| |||||||||| |
Sbjct 297 ATAAACATATACTATATAGTAACCAGTTTCATCAAGCTGCTTCTCCATAGTCATATGATG 356
Query 1445 CTTATC-CTCGTCGTCTTCTGTGGAATTCTTGGGTTCGCAGGCATTGCTCTCTATTTAGC 1503
||| || | |||| |||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 357 CTTGTCGC-CGTCATCTTCTGTGGAATTCTTGGGTTCGCAGGTATTGCTATCTATTTAGC 415
Query 1504 CG-CCATAGCTTACCTTGTCTTCCGGAAAA 1532
| ||||||||||||||||||| ||||||
Sbjct 416 -GTCCATAGCTTACCTTGTCTTTAGGAAAA 444
> Ahg920502 jgi|Araly1|920502|scaffold_101783.1
Length=1006
Score = 165 bits (89), Expect = 1e-39
Identities = 131/152 (86%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 324 CTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGGAAAACATTTGGCTG 383
||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || |
Sbjct 193 CTTTGGTGATTCAATCTCTCGCTGCAAATCTCGGTGTTGTCACTGGAAAGCACTTAGCAG 252
Query 384 AGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACTTTATGTTATGGGTCGTTGCTGAAA 443
|||| || ||| | || |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 253 AGCATTGCAGAACTGAATACTCCAAAGTTCCAAACTTTATGTTATGGGTAGTTGCAGAAA 312
Query 444 TTGCAGTAGTTGCTTGTGACATACCGGAAGTT 475
| | ||||| ||||||||||| || ||||||
Sbjct 313 TCACTGTAGTAGCTTGTGACATTCCAGAAGTT 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69019523940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5