BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01021.1
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932004 jgi|Araly1|932004|scaffold_304461.1 183 1e-46
Ahg932001 jgi|Araly1|932001|scaffold_304458.1 183 1e-46
Ahg932010 jgi|Araly1|932010|scaffold_304467.1 178 6e-45
Ahg931993 jgi|Araly1|931993|scaffold_304450.1 178 6e-45
Ahg931990 jgi|Araly1|931990|scaffold_304447.1 178 6e-45
Ahg931988 jgi|Araly1|931988|scaffold_304445.1 178 6e-45
Ahg932008 jgi|Araly1|932008|scaffold_304465.1 172 3e-43
Ahg931999 jgi|Araly1|931999|scaffold_304456.1 172 3e-43
> Ahg932004 jgi|Araly1|932004|scaffold_304461.1
Length=2848
Score = 183 bits (99), Expect = 1e-46
Identities = 101/102 (99%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2129 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 2188
Query 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2189 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 2230
> Ahg932001 jgi|Araly1|932001|scaffold_304458.1
Length=1149
Score = 183 bits (99), Expect = 1e-46
Identities = 101/102 (99%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 430 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 489
Query 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 531
> Ahg932010 jgi|Araly1|932010|scaffold_304467.1
Length=2881
Score = 178 bits (96), Expect = 6e-45
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2162 ATGCGTCCCGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 2221
Query 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2222 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 2263
> Ahg931993 jgi|Araly1|931993|scaffold_304450.1
Length=1115
Score = 178 bits (96), Expect = 6e-45
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 396 ATGCGTCCCGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 455
Query 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 497
> Ahg931990 jgi|Araly1|931990|scaffold_304447.1
Length=1153
Score = 178 bits (96), Expect = 6e-45
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 825 ATGCGTCCCGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 884
Query 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 926
> Ahg931988 jgi|Araly1|931988|scaffold_304445.1
Length=1116
Score = 178 bits (96), Expect = 6e-45
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 787 ATGCGTCCCGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 846
Query 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 888
> Ahg932008 jgi|Araly1|932008|scaffold_304465.1
Length=606
Score = 172 bits (93), Expect = 3e-43
Identities = 99/102 (97%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 431 ATGCGTCCCGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 490
Query 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
||||||||||||||||| ||||||||||||||||||||||||
Sbjct 491 ACCGACGCGGATTACGGCGGCGGCCTAAGCCCGGGCTTTTGA 532
> Ahg931999 jgi|Araly1|931999|scaffold_304456.1
Length=933
Score = 172 bits (93), Expect = 3e-43
Identities = 99/102 (97%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 431 ATGCGTCCCGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 490
Query 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
||||||||||||||||| ||||||||||||||||||||||||
Sbjct 491 ACCGACGCGGATTACGGCGGCGGCCTAAGCCCGGGCTTTTGA 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 3057674640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5