BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01080.1 Length=1004 Score E Sequences producing significant alignments: (Bits) Value Ahg484014 jgi|Araly1|484014|fgenesh2_kg.5__6__AT2G01080.1 1367 0.0 > Ahg484014 jgi|Araly1|484014|fgenesh2_kg.5__6__AT2G01080.1 Length=906 Score = 1367 bits (740), Expect = 0.0 Identities = 850/898 (95%), Gaps = 27/898 (3%) Strand=Plus/Plus Query 111 AGAGTGAAAAGGGAGAGGGAGCTTCCTGCTTTCACTTACTATGCCTCCTCCTCCTTCTAG 170 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 30 AGAGTGGAAAGGGAGAGGGAGCTTCCTGCTTTCACTTATTATGCCTCCTCCTCCTTCTAG 89 Query 171 TTCTAGAG-CAGGTCTCAACGG-CGATCCGATTGCTGCTCAGAACCAGCAGCCGTATTAC 228 |||||| | |||| || ||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 90 TTCTAG-GCCAGGCCTTAACGGAC-ATCCGATTGCTACTCAGAACCAGCAGCCGTATTAC 147 Query 229 CGGAGCTACTCATCGTCGTCGTCGGCGTCGCTGAAGGGATGCTGCTGCTGCTTGTTCTTG 288 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 148 CGGAGCTACTCATCGTCGTCGTCGGCGTCACTGAAGGGATGCTGCTGCTGCTTGTTCTTG 207 Query 289 CTGTTCGCGTTCCTGGCGCTGCTGGTACTGGCGGTGGTGCTCATCGTAATACTGGCGGTG 348 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 208 CTGTTCGCGTTCCTGGCGCTGCTGGTACTGGCGGTGGTGCTCATAGTAATACTGGCGGTG 267 Query 349 AAGCCGAAGAAGCCGCAGTTCGATCTGCAGCAAGTGGCAGTGGTGTACATGGGGATCTCC 408 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 268 AAGCCGAAGAAGCCGCAGTTCGATCTGCAGCAAGTGGCAGTGGTGTACATGGGAATCTCA 327 Query 409 AACCCAAGCGCTGTTCTGGATCCAACCACCGCCTCCCTCTCCCTCACCATCCGGATGCTC 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 328 AACCCAAGCGCTGTTCTGGATCCAACCACCGCCTCCCTCTCCCTCACCATCCGGATGCTC 387 Query 469 TTCACCGCCGTCAACCCAAACAAGGTCGGAATCAGGTACGGTGAGTCCAGCTTCACGGTC 528 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 388 TTCACCGCCGTCAACCCAAACAAGGTCGGAATCAGGTACGGCGAGTCCAGCTTCACGGTG 447 Query 529 ATGTACAAAGGCATGCCACTGGGGAGGGCGACGGTGCCTGGATTCTACCAGGATGCGCAC 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 ATGTACAAAGGCATGCCACTGGGGAGGGCGACGGTGCCTGGATTCTACCAGGATGCGCAC 507 Query 589 AGTACGAA-GAACGTTGAGGCCACCATCTCCGTCGACAGAGTCAATCTTATGCAAGCCCA 647 ||||| || ||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 508 AGTAC-AAGGAATGTGGAGGCCACCATCTCCGTCGATAGAGTCAATCTTATGCAAGCCCA 566 Query 648 CGCCGCCGATCTCGTCAGAGATGCTTCCTTGAACGACCGAGTGGAGCTCACAGTCCGCGG 707 ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| Sbjct 567 CGCCGCCGATCTCGTCAGAGACGCTTCCTTAAACGACAGAGTGGAGCTCACAGTCCGCGG 626 Query 708 AGACGTGGGGGCTAAGATCCGAGTCATGAATTTCGATTCACCGGGTGTTCAGGTATCCGT 767 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 627 AGACGTGGGGGCTAAGATCCGAGTCATGAATTTCGATTCACCGGGAGTTCAGGTATCCGT 686 Query 768 GAATTGCGGGATAGGCATTAGTCCCAGAAAGCAAGCTCTCATTTACAAGCAATGTGGCTT 827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 687 GAATTGCGGGATAGGCATTAGTCCCAGAAAGCAAGCTCTCATTTACAAGCAATGTGGCTT 746 Query 828 TGATGGCCTCAGCGTCTAATTCCAAAACTGTAACATAATAatattattatatatatatTT 887 |||||||||||||||||||||||||||||||||||||||| | | || |||||||| || Sbjct 747 TGATGGCCTCAGCGTCTAATTCCAAAACTGTAACATAATA-T-T-AT-ATATATAT-TT- 800 Query 888 GTACTGACTACTCCCAACTGCAGAGGAGTTGCaaaaaaaGATCCAGCCAAACTGGTAAAG 947 |||||||||||||||| | |||||||||| ||||||||||||||||||||| Sbjct 801 GTACTGACTACTCCCA---G--------TTGCAAAAAA-GATCCAGCCAAACTGGTAAAG 848 Query 948 AAATGTAACAAGATC--C-ATCCTTCCCCTGCCTTTTTTGGGAAATTTTTGTTTCTAC 1002 ||||| ||||||||| | |||||||||||||||||||||| ||| |||||||||||| Sbjct 849 AAATGGAACAAGATCATCCATCCTTCCCCTGCCTTTTTTGGAAAACTTTTGTTTCTAC 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37322335743 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5