BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01110.1
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484017 jgi|Araly1|484017|fgenesh2_kg.5__9__AT2G01110.1 2135 0.0
> Ahg484017 jgi|Araly1|484017|fgenesh2_kg.5__9__AT2G01110.1
Length=1587
Score = 2135 bits (1156), Expect = 0.0
Identities = 1480/1623 (91%), Gaps = 76/1623 (5%)
Strand=Plus/Plus
Query 1 GaaaaaaaaaaGGATTGGGTTGTTTTGGAAAATATCAAATGTGGGCAACGAAACTCGACC 60
||||| |||||||||| || ||||||| ||||||||||||||||||| |||||||||||
Sbjct 1 GAAAAGAAAAAGGATT-GG--GTTTTGG-AAATATCAAATGTGGGCAAGGAAACTCGACC 56
Query 61 GGAACCAATCGTTCCTTCTCTGAAGCTCTCTTTGCAATTGAAAATCAACAACATACGATA 120
||||||||||| | |||||||||||||| ||| | |||||||||
Sbjct 57 GGAACCAATCG---------T-----TCTCTTTGCAATTG-----CAA-AGCATACGATA 96
Query 121 CGAGAGAGGATTCTTCGAGAGATGAGCAGCACAAGCACTAGTTCTGCTCTTATCCACCAT 180
| || | | ||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 97 C----GA-G------C-AGAGATGGGCAGCACAAGCACCAGTTCTGCTCTTATCCACCAT 144
Query 181 TTCCGCCTCACCACTCGCAACTTGGGTTCGCCTACAAAGCAGCGTTGTCCTTACGCTGTA 240
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 145 TTCCCCCTCACCACTCGCAACTTGGGTTCGCCTACAAAGCAGCGTCCTCCTTACGCTGTA 204
Query 241 ACTTTCTGCAATTCGTGGAGGGAAGCTGGACTCCGATACTCCGTCACGCAACGCCGGAGC 300
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 205 AATTTCTGCAATTCGTGGAGGGAAGCTGGACTCCGATACTCTGTCACGCAACGCCGGAGC 264
Query 301 AAAGGCTTTGGGCC-GGTGTCAGCTCTCAATGACGACGATTCACCAACAGA--GACC-AC 356
||||||||| |||| |||| |||||||| |||| | ||| | || || ||| ||
Sbjct 265 AAAGGCTTT-GGCCGGGTGCCAGCTCTCGATGA-TA--ATT--CTGAC-GATTCACCAAC 317
Query 357 CCCCGGCGTTGGCTCTGCTGTAGAAGACAGACCACCAGATTCATCTGAAGATAGATCAAG 416
|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 318 CCCCGGCGTTGGCTCTGCTGTAGAAGACAGACCACCAGATGCATCCGAAGACAGATCAAG 377
Query 417 TTCGGTCTATGAGTTTCTGTATCCCCGTAAAGAGGAGCTCCCTGATGACAAAGAAATGAC 476
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TTCGGTCTATGAGTTTCTCTATCCCCGTAAAGAGGAGCTCCCTGATGACAAAGAAATGAC 437
Query 477 TATTTTCGACCATCTCGAGGAGCTCCGGGAGAGAATATTCGTCTCTGTTTTGGCTGTAGG 536
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 438 TATTTTCGATCATCTCGAGGAGCTCCGGGAGAGAATATTCGTCTCTGTTTTGGCTGTGGG 497
Query 537 AGCTGCAATCTTGGGATGCTTCGCCTTCTCCAAAGATCTTATTGTCTTTCTTGAAGCTCC 596
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 498 AGCTGCAATCTTGGGATGCTTCGCCTTCTCCAAAGATCTTATTGTGTTTCTTGAAGCTCC 557
Query 597 CGTCAAAACTCAGGGTGTACGGTTTCTCCAGCTTGCTCCTGGCGAATTTTTCTTCACAAC 656
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 558 TGTCAAAACTCAGGGTGTACGCTTTCTGCAGCTTGCTCCTGGCGAATTTTTCTTCACAAC 617
Query 657 TTTAAAGGTCTCCGGTTATTGCGGGCTTCTACTAGGGAGCCCAGTGATCCTGTATGAGAT 716
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TCTAAAGGTCTCGGGTTATTGCGGGCTTCTACTAGGGAGCCCAGTGATCCTGTATGAGAT 677
Query 717 TATAGCTTTTGTCCTTCCCGGTCTGACACGGGCTGAGAGAAGGTTTCTGGGGCCAATTGT 776
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 678 TATAGCTTTTGTCCTTCCCGGTCTGACACGGGCTGAAAGAAGGTTTCTGGGGCCAATTGT 737
Query 777 ATTTGGCTCCTCATTGCTCTTCTATGCTGGACTTGCTTTCTCCTACTGGGTTTTAACCCC 836
||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 738 CTTTGGTTCCTCCTTGCTCTTCTATGCTGGACTTGCCTTCTCCTACTGGGTTTTAACCCC 797
Query 837 TGCAGCCTTGAATTTCTTTGTGAATTACGCTGAAGGTGTGGTAGAATCTCTGTGGTCTAT 896
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 798 TGCAGCCTTGAATTTCTTTGTGAATTACGCGGAAGGGGTGGTAGAATCTCTGTGGTCTAT 857
Query 897 CGACCAGTACTTTGAGTTTGTACTAGTGCTTATGTTCAGCACAGGCCTTTCTTTCCAGGT 956
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 858 CGACCAGTACTTTGAGTTTGTACTAGTGCTTATGTTCAGCACGGGCCTGTCTTTCCAGGT 917
Query 957 TCCAGTCATTCAGTTACTCCTGGGACAAGTAGGGGTTGTGTCGGGAGATCAAATGCTATC 1016
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 918 TCCAGTCATTCAGTTACTCCTGGGACAAGTAGGGGTGGTGTCGGGAGATCAAATGCTTTC 977
Query 1017 AATTTGGAGATATGTGGTGGTAGGTGCGGTGGTTGCAGCAGCTGTTGTCACACCCTCGAC 1076
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 978 AATTTGGAGATATGTGGTGGTAGGTGCAGTGGTTGCAGCAGCTGTAGTCACACCCTCGAC 1037
Query 1077 AGACCCTGTCACTCAAATGCTCCTAGCAACACCGCTTCTGGGGCTCTACTTGGGTGGTGC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 AGACCCTGTCACTCAAATGCTCCTAGCAACACCGCTTCTGGGGCTCTACTTGGGTGGTGC 1097
Query 1137 ATGGATGGTCAAGCTCACAGGTCGGTGAGAAACTTGGTTGTTCAGAGACGAAAATAAATC 1196
||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||
Sbjct 1098 ATGGATGGTCAAGCTCACAGGTCGGTGAGAAACTTAGTTGTTCAAAGAC-AAA-TAAATC 1155
Query 1197 ATGTATCTTGTAGAGTATATCACACTTTCC----A-----CCACAGTTTGGTACCCAAAG 1247
|||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1156 ATGTATCTTGTAGAGTATATCACACTTTCCGTGCATGAGACCACAGTTTGGTACCCAAAG 1215
Query 1248 TGTTTATCTGAATCTTCATCTTCTTCATATGTACAAATTTAGCAACCAAAA-ACAGCAAC 1306
|||||||||||| ||| ||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 1216 TGTTTATCTGAA-CTTTATCTTCTTCGGATGTACAAATTTAGCAACCAAAAGA-AGCAAC 1273
Query 1307 AAGGTTTAAGGGGAGGGGCATTTATTTTCTATTATATGATACATGATAATTCAGATT-TA 1365
|||||| ||||||||||| ||||||| || |||||||||| |||||||||||||||| |
Sbjct 1274 AAGGTT-AAGGGGAGGGGTATTTATTGTCGATTATATGATTCATGATAATTCAGATTCT- 1331
Query 1366 GGAGATGAATG-TCTAATCTTTAGATGCTGCGATGGCTTTGTGGGCTGCATTTCATGAAA 1424
||||||||| | ||||||||||||||||||| |||||| |||| |||||| | |||||||
Sbjct 1332 GGAGATGAAAGGTCTAATCTTTAGATGCTGCAATGGCTGTGTGCGCTGCACTCCATGAAA 1391
Query 1425 ------CATACAAGTGATTCCATATTCAGAAGAATGAAGAAAATTCAAATTGGACCAGCC 1478
|||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1392 GTGAAACATACAAGTGATTCCATATTCAAAATAATGAAGAAAATTCAAACTGGACCAGCA 1451
Query 1479 GGTTGGCATATATATACATCTTCGCGTGCAACACAT-AGGCATAGCTGAGAGTATCAAGA 1537
|| | ||| | ||||| |||||| ||||||||||| || ||||| ||||||||||||||
Sbjct 1452 AGTAG-CAT-T-TATACGTCTTCGTGTGCAACACATGAG-CATAGTTGAGAGTATCAAGA 1507
Query 1538 GCAAGAGACCACAATCCTGGTAACTACAAGCTGAAGATATGATTAAGACGCTGCAGAGGG 1597
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1508 GCAAGAGACCACAATCCTGGTAACTACAAGATGAAGATATGATTATGACGCTGCAGAGGG 1567
Query 1598 AAG 1600
|||
Sbjct 1568 AAG 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63382167680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5