BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01120.2 Length=1457 Score E Sequences producing significant alignments: (Bits) Value Ahg322461 jgi|Araly1|322461|fgenesh1_pm.C_scaffold_5000005 1293 0.0 > Ahg322461 jgi|Araly1|322461|fgenesh1_pm.C_scaffold_5000005 Length=1365 Score = 1293 bits (700), Expect = 0.0 Identities = 831/890 (93%), Gaps = 28/890 (3%) Strand=Plus/Plus Query 494 GGAAAGCAGCGGTTGCTATACAGTKTGCTGGACGATGCTATGCAATCTGTAACCTCACAA 553 |||||||||||||||||||||||| |||| | |||||||||||||||||||| |||||| Sbjct 499 GGAAAGCAGCGGTTGCTATACAGTTTGCT-G--GATGCTATGCAATCTGTAACATCACAA 555 Query 554 GCTGTTGTCGTCGGTATTAGTTCTCGACTGGACGCCGACCAACTTCTGGAGAAAAGAGTG 613 ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 556 GCTGTTGTCATCGGTATTAGTTCTCGACTGGACGCTGACCAGCTTCTGGAGAAAAGAGTG 615 Query 614 AGATCTCGCTTTTCACACAGAAAATTTTTGTTTCTTCCTCCTTCCAGGGAAGAACTTGAC 673 |||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||| Sbjct 616 AGATCTCGCTTTTCACACAGAAAAATTCTGTTTCTTCCTCCATCCAGGGACGAACTTGAC 675 Query 674 GGTTTGTTTGTACACCTGCTGTCTCTACCAGCAGACTCAGGCTTCCCCAGTGGATATGTT 733 |||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 676 GGTTTGTTGGAACACCTGCTGTCTCTACCAGCAGACTCAAGCTTCCCCAGTGGATATGTT 735 Query 734 TCTCGGTTCAATGATAAGATTAAGAATTTAACATCAGACACGAGATTTAAAGACATACTT 793 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 736 TCTCGGTTCAATGATAAGATTAAGAATATAACATCAGACAGGAGATTTAAAGACATACTT 795 Query 794 AAGACATTGTTTAATGCTAATTCTACTGTGAACAGTTTCCTGAAGTTTATTCTATCTCTT 853 |||||||| ||||||||| |||||||||||||||||||| ||||| | || Sbjct 796 AAGACATTTTTTAATGCTCATTCTACTGTGAACAGTTTCTTGAAG-----------T-TT 843 Query 854 GATGTTAGATTCTGCGCTGTTTCTTTAATGAATTTGGAATCTGGCCTCCTCTCTCTTGAG 913 | | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 844 -A---T--ATTCTGCGCTGTTTCTTTAATGAATTTGGAATCTGGCCTCCTCTCTCTTGAG 897 Query 914 AACTTCAAAGCAGCACTTTCAAGTATGCAAAGGCAACCAAAGTTGGAAGCCGTTAGAGAT 973 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 898 AACTTCAAAGCAGCACTTTCAAGTATGCAAAGGCAACCAAAGCTGGAAGCCGTTAGAGAT 957 Query 974 TGTTCCGTACTGGAGCTTTATCTTCTGGTCTGTATGAGGAGGTTAGAAGTGAAGGAGCAA 1033 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 958 TGTTCCGTACTGGAGCTTTATCTTCTGGTATGTATGAGGAGGTTAGAAGTGAAGGAGCAA 1017 Query 1034 AGCTCATACAACTTCATCAGTGTGATGAAAGAGTATAAGGCGATACACGATTCTTTTCAT 1093 ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1018 AGCTCATACAACTTCATTAGTGTAATGAAAGAGTACAAGGCGATACACGATTCTTTTCAA 1077 Query 1094 ACCTCAGACTACTACGCACAAAATGTCTGCCTAAGGGCATTTGAGCACCTGAGAGAGCGA 1153 ||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 1078 ACCTCGGACTACTACGCACAAAATGTCTGCATAAGGGGATTTGAGCACCTGAGAGAGCGA 1137 Query 1154 CAAGTTATATGCTATGCAGAGAATAGAGGACAGTCTCAGACAGGAGAGTACCGTTTGCA- 1212 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1138 CAAGTTATATGCTATGCAGAGAATAGAGGACAGTCTCAGACAGGAGAGTACCGTCC-CAT 1196 Query 1213 GAAGCTTTTGATATCAGCCTCTGAGCTTCATCAGGGAATGAGATCTCATGCTTGTTGCCC 1272 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1197 GAAGCTTTTGATATCAGCCTCTGAGCTTCATCAGGGAATGAGATCTCATGCGTGTTGCCC 1256 Query 1273 CG----CCATCCTTCTCAAGTTATTGGACCATTGATCTCTGTGTTTTTGTCCCTTGGGAA 1328 || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1257 CGTAAGCCATCCTTCTCAAGTTATTGGACCATTGATCTCTCTGTTTTTGTCCCTTGGGAA 1316 Query 1329 TAAGACAAGTCTCTCAAGGCCCTGTGATATGTATGTTTATTTCATGGTAA 1378 ||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1317 TAAGACA-GTCTCTCAAGGTCCTGTGATATGTATGTTTATTTCATGGTAA 1365 Score = 723 bits (391), Expect = 0.0 Identities = 440/466 (94%), Gaps = 0/466 (0%) Strand=Plus/Plus Query 29 ATGGGCAAAGAGACTCCGGCGGAGAAATCCCTAAATCTGATTCGCGGGAGACTCTGTGAT 88 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGGCAAAGAGATTCCGGCGGAGAAATCCCTAAATCTGATTCGCGGGAGACTCTGCGAT 60 Query 89 CCTAGTTATGTCTTCAGACCTCTTTCCGCTTCGTCAGATAGCAATTACAGTAAATTGAAG 148 ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 CCTAGTTTTATCTTCAGACCTCTTTCCGCTTCGTCAGACAGCAATTACAGTAAATTGAAG 120 Query 149 TTCATTGTATCAACCTCTATCACGGAGGGATGCAACAACTCGATGTTGCTTCTCGGCCCT 208 |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| Sbjct 121 TTCATTGTATCAACCTCTATCACGGAGGGATGCAACAATTCCATCTTGCTTCTCGGCCCT 180 Query 209 CGCGGCTCTGGCAAAGCTGCTGTCTTGGATCTCGKTSTAGGTGAKTTATTGGAGCAGTTT 268 ||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||| Sbjct 181 CGCGGCTCTGGCAAAACTGCTGTCTTGGATCTCGTTGTAGGTGATTTATTGGAGCAGTTT 240 Query 269 CCTGATTCAGTATCAGTAATCAGATTGAATGGACTCTTGCATAGTGATGATAATTGTGCC 328 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 CCTGATTCAGTATCAGTAATCAGATTGAATGGACTCTTGCATAGTGATGATAATTCTGCT 300 Query 329 TTTAAGGAAATTGCCAAACAGTTGTGCATGGAACACCACCTACTATTCTCCAAAATGGCA 388 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 TTTAAGGAAATTGCCAGACAGTTGTGCATGGAACACCACCTACTATTCTCCAAGATGGCA 360 Query 389 TCATTCGATGACAATTCACAATTCATTATAGCCATGTTGCGGGCATGTGGACTAGCACAT 448 ||||||||||| ||||| || ||||| |||||||||||||||| ||| |||||||||||| Sbjct 361 TCATTCGATGAGAATTCGCACTTCATAATAGCCATGTTGCGGGAATGCGGACTAGCACAT 420 Query 449 AAGACTATCATCTTTGTGCTTGATGAATTTGACATGTTTGCACAGG 494 || || ||||||||||||||||| ||||||||||||||||| |||| Sbjct 421 AAAACAATCATCTTTGTGCTTGACGAATTTGACATGTTTGCTCAGG 466 Lambda K H 1.34 0.622 1.13 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54507140595 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5