BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01140.1 Length=1535 Score E Sequences producing significant alignments: (Bits) Value Ahg484021 jgi|Araly1|484021|fgenesh2_kg.5__13__AT2G01140.1 2170 0.0 > Ahg484021 jgi|Araly1|484021|fgenesh2_kg.5__13__AT2G01140.1 Length=1444 Score = 2170 bits (1175), Expect = 0.0 Identities = 1379/1471 (94%), Gaps = 40/1471 (3%) Strand=Plus/Plus Query 3 TGGTGGGAGTAGGTGATGCCAAAGTAGACGACTACTAATAGTAGT-AAACAAAACCTTTG 61 ||||||||||||||||||||||||||||||||||| |||||||| ||| ||| | Sbjct 1 TGGTGGGAGTAGGTGATGCCAAAGTAGACGACTAC--ATAGTAGTAAAAGTAAATC-GCA 57 Query 62 GCTTTA-ACACTCTCCTCCAAATCCCAGA--TCTCTCTCTGTCTC--T--GTCCCGCGGA 114 | | |||||||||||||||| ||||| ||||||||| |||| | |||||||||| Sbjct 58 AC-AAACACACTCTCCTCCAAATTCCAGATCTCTCTCTCTCTCTCTGTGAGTCCCGCGGA 116 Query 115 GTCCCCGAGAGATTGATCACCATCACTTTTGTA-CCTTCCTTGTACTACCTATGGCGTCT 173 ||||||||||||| |||||||| | | |||| | |||||||||||||||||||||||||| Sbjct 117 GTCCCCGAGAGATCGATCACCA-C-C-TTTG-ACCCTTCCTTGTACTACCTATGGCGTCT 172 Query 174 GCTAGCTTCGTTAAGCCTAACACCCTCTCTTCTCCATGGATCGGCCAACGCTCCTTTGCT 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 GCTAGCTTCGTTAAGCCTAACACCCTCTCTTCTCCATGGATCGGCCAACGCTCCTTTGCT 232 Query 234 CACACCTCTGCTTCTTCTTCTCCTCCTCCTCGAGTCTCCTTCGCGATCCGCGCCGGTGCT 293 |||||||||| | | | |||||||||||||||||||||||||||||||||||||| Sbjct 233 CACACCTCTG------C-T-T-CTCCTCCTCGAGTCTCCTTCGCGATCCGCGCCGGTGCT 283 Query 294 TACTCCGACGAGCTTGTTAAAACCGCCAAAAGCATTGCATCCCCTGGGAGAGGTATCTTG 353 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 284 TACTCCGACGAGCTTGTTAAAACCGCCAAAAGCGTGGCATCCCCTGGGAGAGGTATCTTG 343 Query 354 GCGATCGATGAGTCCAATGCAACCTGTGGGAAGAGGCTTGCTTCTATCGGCTTGGATAAC 413 |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 344 GCGATCGATGAGTCAAATGCGACCTGTGGGAAGAGGCTCGCTTCTATCGGCTTGGATAAC 403 Query 414 ACCGAGGACAACCGTCAGGCCTACAGGCAACTTCTGCTTACCACTCCTGGCCTCGGCGAT 473 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 404 ACTGAGGACAACCGTCAGGCCTACAGGCAACTTCTGCTTACCACTCCTGGCCTCGGCGAT 463 Query 474 TACATCTCTGGTTCCATTCTCTTCGAGGAGACTCTTTACCAGTCCACCAAGGACGGTAAG 533 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 464 TACATCTCTGGTGCCATTCTCTTCGAGGAGACTCTTTACCAGTCCACCAAGGACGGCAAG 523 Query 534 ACCTTTGTCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGGGC 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 ACCTTTGTCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGGGC 583 Query 594 TTGTCTCCCCTAGCC-GGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTGGATGGATTGGC 652 ||||||||||| ||| || |||||| | |||||||||||||||||||||||||||||||| Sbjct 584 TTGTCTCCCCT-GCCTGGCTCCAACTACGAGTCTTGGTGCCAAGGCTTGGATGGATTGGC 642 Query 653 CTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGGAGGACAGTGGT 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 CTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGGAGGACAGTGGT 702 Query 713 GAGTGTTCCCTGCGGTCCTTCAGCACTGGCTGTGAAGGAAGCTGCGTGGGGGCTGGCTCG 772 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 703 GAGTGTTCCTTGCGGTCCTTCAGCACTGGCTGTGAAGGAAGCTGCGTGGGGCCTGGCTCG 762 Query 773 CTATGCAGCCATCTCTCAGGATAATGGTCTTGTCCCCATTGTGGAGCCAGAGATCCTTCT 832 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 763 CTATGCAGCCATCTCTCAGGAGAATGGTCTTGTGCCCATTGTGGAGCCAGAGATCCTTCT 822 Query 833 GGACGGGGACCACCCAATAGAGAGGACTCTGGAGGTGGCAGAGAAAGTGTGGTCAGAGGT 892 ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| Sbjct 823 GGACGGGGACCACCCCATTGAGAGGACTCTGGAGGTGGCAGAGAAAGTGTGGTCTGAGGT 882 Query 893 GTTCTTCTACTTGGCACAGAACAACGTCATGTTTGAGGGCATTCTGTTGAAGCCGAGCAT 952 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 GTTCTTCTACTTGGCCCAGAACAACGTCATGTTTGAGGGCATTCTGTTGAAGCCGAGCAT 942 Query 953 GGTCACCCCAGGCGCTGAGCACAAGAACAAGGCCTCTCCCGAGACCGTTGCAGATTTCAC 1012 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 943 GGTCACCCCAGGGGCTGAGCACAAGAACAAGGCCTCTCCCGAGACCGTTGCAGAGTTCAC 1002 Query 1013 GCTCACCATGCTGAAAAGGAGGGTTCCTCCGGCTGTCCCAGGGATCATGTTTCTGTCAGG 1072 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1003 GCTCACCATGCTCAAAAGGAGGGTTCCTCCGGCTGTCCCAGGAATCATGTTTCTGTCTGG 1062 Query 1073 AGGACAATCAGAGGCAGAGGCCACACTGAACCTGAACGCCATGAACCAGAGCCCAAACCC 1132 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1063 AGGACAATCGGAGGCAGAGGCCACACTGAACCTGAACGCCATGAACCAGAGCCCAAACCC 1122 Query 1133 ATGGCATGTGTCCTTCTCATACGCACGTGCCCTGCAGAACTCCGTGCTCAGAACATGGCA 1192 |||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||| Sbjct 1123 ATGGCATGTGTCCTTCTCCTACGCACGTGCCCTGCAGAACTCCGTGCTGAGGACGTGGCA 1182 Query 1193 AGGCAAGCCGGAGAAGATTGAGGCCTCGCAGAAGGCACTGTTGGTGAGGGCAAAGGCCAA 1252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1183 AGGCAAGCCGGAGAAGATTGAGGCCTCGCAGAAGGCACTGTTGGTGAGGGCAAAGGCCAA 1242 Query 1253 CTCACTGGCCCAGCTCGGCAAATACTCAGCCGAGGGAGAGAACGAGGATGCCAAGAAAGG 1312 |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1243 CTCATTGGCCCAGCTCGGCAAATACTCAGCAGAGGGCGAGAACGAGGATGCCAAGAAAGG 1302 Query 1313 AATGTTTGTCAAGGGTTACACCTACTGATTTGTTAATTTCAGAGATCGTAATAAGGATTA 1372 |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 1303 AATGTTTGTCAAGGGTTACACCTACTGATT-GTTAATTTCAAAGATCGTAATAAGGAC-- 1359 Query 1373 AGGACCATTGTTGTCttttgtttttttttcccttttttgtttt---GTCTCTGAGAAAGA 1429 || |||||||||||||| |||||||||||||||| |||| |||||||||||||| Sbjct 1360 ----CC-TTGTTGTCTTTTGTCTTTTTTTCCCTTTTTTTTTTTTTTGTCTCTGAGAAAGA 1414 Query 1430 AAGACAGTCACGAGTCACGATCATATCATAT 1460 | |||| ||| ||||| ||||||||||||| Sbjct 1415 A-GACACTCATGAGTCGGGATCATATCATAT 1444 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57478179705 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5