BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01150.1 Length=847 Score E Sequences producing significant alignments: (Bits) Value Ahg484022 jgi|Araly1|484022|fgenesh2_kg.5__14__AT2G01150.1 691 0.0 > Ahg484022 jgi|Araly1|484022|fgenesh2_kg.5__14__AT2G01150.1 Length=670 Score = 691 bits (374), Expect = 0.0 Identities = 613/716 (86%), Gaps = 65/716 (9%) Strand=Plus/Plus Query 54 AATGGGACTACAAGGTCAGCTCTCCGACGTGTCATCAGATTCGATCCCACTGATGCTACT 113 |||||||||||||||||||||||||||||| || || |||||||| || ||||||||||| Sbjct 1 AATGGGACTACAAGGTCAGCTCTCCGACGTCTCCTCGGATTCGATACCTCTGATGCTACT 60 Query 114 GGCTCTCCTCGCAACTTTCTTCAGACACGTCCGGTCTCTTCTCCTCTTCCCTTCTTCT-- 171 |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 61 GGCTCTCCTCGCCACTTTCTTCAGGCACGTCCGGTCTCTTCTCCTCCTCCCTTCTTCTGC 120 Query 172 -GCCCCC---GTTGTTGTTG---TTACTTCAAACCTCAGCGTCCTCGCCGACCAGCTCAA 224 |||||| |||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 121 CGCCCCCGTTGTTGTTGTTGTTTTTTCCTCAAACCTCAGCGTCCTCGCCGACCAGCTCAA 180 Query 225 CCTAAATCGCCTCTTCTCGTACCGCTACTCCGACAACGCAGCCTCTGACTGCATCGTGTG 284 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 181 CCTAAATCGCCTCTTCTCGTACCGCTACTCCGACAACGCAGCCTCCGACTGCATCGTGTG 240 Query 285 TCTGTCTAAACTCAAGACCGGAGAAGAAGTGAGGAAGCTAGATTGCAGACACGTCTTCCA 344 |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 241 CCTGTCTTCACTCAAGACCGGAGAACAAGTGAGGAAGCTCGATTGCAGACACGTCTTCCA 300 Query 345 TAAGCAGTGTTTGGAAGGCTGGCTTCAACATCTCAACTTCAATTGCCCGCTCTGTAGATC 404 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TAAGCAGTGTTTGGAAGGTTGGCTTCAACATCTCAACTTCAATTGCCCGCTCTGTAGATC 360 Query 405 TCCATTGCTACCTCATCATCATCAGGGA-CATGGCAGTGATGCGTCGATCTCAGCCTTCC 463 |||| ||||||||||||||||||| | |||||||||||| || ||||||||||||||| Sbjct 361 TCCACTGCTACCTCATCATCATCATC-ATCATGGCAGTGATACGGCGATCTCAGCCTTCC 419 Query 464 CTCTTCGCTCTACCTCTACTGCATCATCTCATTGATTTTTATGTgaagaaagaagaaaga 523 ||||||||||| | | | | || | ||| ||| ||||||| |||||||||||| Sbjct 420 CTCTTCGCTCT-CAT-T---G-AT--T---ATT--TTT--ATGTGAACAAAGAAGAAAGA 464 Query 524 agaaagcaagagagaagaagaTGGAGGGAGGATGCTTTTTTATTT-ATCTTCC-TTCTCC 581 | | | | |||| | |||||||||||||||||| ||||| || | | | || |||||| Sbjct 465 A-A--G-A-GAGA-A-GAAGATGGAGGGAGGATG-TTTTTGATCTCA-CGGCCCTTCTCC 515 Query 582 TCTTTCCTTTTT--AGGAGAAGATTCTTATTTCTTACTACAGAAGATTGATTCTTCTtat 639 |||||||||||| |||| |||| | ||||||||||||| | | | | | | || Sbjct 516 TCTTTCCTTTTTTTAGGAAAAGAATATTATTTCTTACTA-A-A-GCT-G---CAGATTG- 567 Query 640 atatctat-atatataACCTTCTATATTTAGCTATGTTTTTGAGGAATCTCAGATCGGAA 698 || ||| | ||||||| | |||||| | ||| |||| |||||||||||||||||| Sbjct 568 AT-TCT-TCATATATA---T-CTATAT--A--TAT-TTTT-GAGGAATCTCAGATCGGA- 614 Query 699 GAGAGGTCCTTTTGTTTTTCAGATTTCCAC-T-C--TGTAAATTCTTAGTATGAAA 750 |||||||||||||||||||||||||||| | | | |||||||||||| ||||||| Sbjct 615 GAGAGGTCCTTTTGTTTTTCAGATTTCCGCATGCAGTGTAAATTCTTAATATGAAA 670 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31337037774 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5