BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01260.1
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484037 jgi|Araly1|484037|fgenesh2_kg.5__29__AT2G01260.1 1934 0.0
Ahg346633 jgi|Araly1|346633|fgenesh1_pg.C_scaffold_5000025 913 0.0
> Ahg484037 jgi|Araly1|484037|fgenesh2_kg.5__29__AT2G01260.1
Length=1643
Score = 1934 bits (1047), Expect = 0.0
Identities = 1460/1644 (89%), Gaps = 89/1644 (5%)
Strand=Plus/Plus
Query 6 CCCCtttttttGAAATTACCAAATCTCTCTCCATTTCAGCGAA--TCT-C-TTCTTCAGA 61
||| ||||||||||||| ||||||||||||||||||| ||||| ||| | ||||| ||
Sbjct 1 CCCTTTTTTTTGAAATTCCCAAATCTCTCTCCATTTCGGCGAATCTCTCCTTTCTTGGGA 60
Query 62 --TTTTCCTCTTCCACTAATCT-TTTGCCTGTTTAATCGGAGCTTAG--AT-ATCATCAG 115
|||||||||||||||||| | |||||| ||||||||||||||||| || ||||||||
Sbjct 61 TTTTTTCCTCTTCCACTAATATGTTTGCCAGTTTAATCGGAGCTTAGATATCATCATCAG 120
Query 116 AAG--GTTTTTGTTCTATCAATTC-TCCTTCATTCGATCCATTTTT-ACCC---CTTTC- 167
|| |||||||||||||||||| | |||| || ||||||||||| ||| |||||
Sbjct 121 GAGCCTTTTTTGTTCTATCAATTCGT-CTTCCTTGGATCCATTTTTCCCCCTTTCTTTCT 179
Query 168 T----TTGGAATCTCCGATTCGACCAAGCTTCTTCGCCGTCTCATCGGAGACA-A-ACA- 220
| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 180 TGGAATTGGAATCTCCGATTCGACCAAGCTTCTTCGCCGTCTCATCGGAGACAGACACAT 239
Query 221 -CATATTC-------ACGCTAAATCAACTAAATT-AAGCTTAGATAGATATATAGATATA 271
| ||||| |||| |||||||||||||| || |||||||||||| ||||||| |
Sbjct 240 GCTTATTCTTTTTTTACGCAAAATCAACTAAATTGAA-CTTAGATAGATAGATAGATAGA 298
Query 272 TAGGTA-A-A----AACTCAACTAC---GACTACTCGGAGATGTTGGGTGCTGGATTTCA 322
||| || | | || |||||||| |||||||| |||||||||||||||||||||
Sbjct 299 TAGATAGATAGGTCAAATCAACTACGAGGACTACTC---GATGTTGGGTGCTGGATTTCA 355
Query 323 GTTGACGAGAGGCAGACACGGCGACGATCCTTTCTACACTTCCGCAAAAACTCGCAGGGC 382
||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 356 GTTGACGCGAGGCCGACACGGCGACGATCCTTTCTACACTTGGGCAAAATCTCGCAGGGC 415
Query 383 CAATCAGCGCATCGATCAGCTCCGTAGAGCTCAGAGCGACGTCTCTAACGTTCCATCATC 442
|||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||
Sbjct 416 CAATCAGCGCATCGATCAGCTCCGGAGAGCTCAGAGCGACGTTTCTAACGGCCCCTCATC 475
Query 443 AGCT-C-C-TTCTCCGCATAAA-------C-AA-C-----AACTC-GAGCCGTCCGATTT 484
|||| | | | | |||||| | || | ||| |||||||||| ||
Sbjct 476 AGCTCCGCATAAACAACATAAACTCCTTCCTAACCTTGTTGCCTCTGAGCCGTCCGCTTC 535
Query 485 ATCTTCCAGTAATCTAGATCGGTTTTTAGAGTCGGTCACACCATCCGTACCGGCTCAGTT 544
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 536 GTCTTCGAGTAATCTAGATCGGTTTTTAGAGTCGGTCACACCATCCGTGCCGGCCCAGTT 595
Query 545 TTTATCCAAGACATTGCTACGAGAAAGAAGAGCAGATGATGATTATAATAAACTTGTGCC 604
||||||||||||||||||| | ||||||||||| |||||||| | | |||||| ||||||
Sbjct 596 TTTATCCAAGACATTGCTATGGGAAAGAAGAGCCGATGATGA-T-T-ATAAACCTGTGCC 652
Query 605 TTATTTTGTGCTTGGTGATATATGGGACTCATTTGCAGAGTGGAGTGCTTACGGCACCGG 664
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 653 TTACTTTGTGCTTGGAGATATATGGGACTCATTTGCTGAGTGGAGTGCTTACGGCACCGG 712
Query 665 TGTGCCTCTTGTTTTGAATAACAACAAGGATCGTGTTATCCAATACTATGTCCCTTCTTT 724
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 713 AGTGCCTCTTGTTTTGAATAACAACAAGGATCGTGTTATCCAATACTATGTCCCCTCTTT 772
Query 725 GTCAGCCATTCAAATCTATGCTCATTCTCATGCCTTGGATTCATCTCTTAAATCAAGGCG 784
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 773 GTCAGCCATTCAAATCTATGCTCATTCTCATGCCTTGAATTCTTCTCTTAAATCAAGGCG 832
Query 785 TCCTGGTGATAGTAGCGACAGTGATTTTCGGGATTCAAGTAGCGATGTTAGCAGCGATAG 844
||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 833 TCCAGGTGATATTAGCGACAGCGATTTCCGGGATTCAAGTAGCGATGTTAGCAGCGATAG 892
Query 845 TGATTCCGAGCGGGTTTCTGCTAGAGTAGACTGTATCTCATTGAGGGATCAACATCAGGA 904
|||||| || | ||||||||||||||||||| ||||||||||||||| || ||
Sbjct 893 TGATTCTGAACAGGTTTCTGCTAGAGTAGACCGTATCTCATTGAGGG------AT---GA 943
Query 905 AGACTCTTCCAGTGATGATGGCGAACCTTTAGGCTCTCAAGGTCGTTTGATGTTTGAGTA 964
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AGATTCATCCAGTGATGATGGCGAACCTTTAGGCTCTCAAGGTCGTTTGATGTTTGAGTA 1003
Query 965 TCTTGAAAGAGACCTTCCATACATCCGTGAACCTTTTGCTGATAAGGTCTTGGACCTCGC 1024
|||||||||||||||||||||||||||||||||||| || || |||||||| || || ||
Sbjct 1004 TCTTGAAAGAGACCTTCCATACATCCGTGAACCTTTGGCCGACAAGGTCTTTGATCTTGC 1063
Query 1025 AGCTCAGTTTCCCGAGCTAATGACGCTGAGAAGCTGTGACTTACTTCGGTCAAGCTGGTT 1084
|||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1064 AGCTCAGTTTCCCGAGCTGTTGACGCTGAAAAGCTGTGACTTACTTCCGTCAAGCTGGTT 1123
Query 1085 TTCTGTTGCATGGTACCCAATTTACAGAATACCCACAGGACCGACACTGAAGGACCTGGA 1144
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1124 TTCTGTGGCATGGTACCCAATTTACAGAATACCCACAGGACCGACATTGAAGGACCTGGA 1183
Query 1145 TGCTTGTTTCTTGACGTATCATTCCCTACACACATCTTTTGGAGGTGAAGGCAGTGAACA 1204
||||||||||||||| |||||||||||||||||| ||| ||||||| ||| ||||| |||
Sbjct 1184 TGCTTGTTTCTTGACTTATCATTCCCTACACACACCTTCTGGAGGTAAAGCCAGTGCACA 1243
Query 1205 ATCAATGAGCCTTACGCAACCAAGGGAGAGCGAGAAGATGTCATTGCCTGTGTTTGGGCT 1264
|||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1244 ATCAATGAGCCTTATGCAGGCAAGGGAGAGTGAGAAGATGTCATTGCCTGTGTTTGGGCT 1303
Query 1265 TGCTTCATACAAGTTCAGAGGTTCATTATGGACACCCATTGGGGGTTCGGAGCACCAGCT 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 TGCTTCATACAAGTTCAGAGGTTCATTATGGACACCCATTGGGGGTTCGGAGCACCAGCT 1363
Query 1325 CGTGAACTCTCTGTTCCAAGCCGCTGACAAATGGCTGCATTCTTGTCATGTCAGCCACCC 1384
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1364 CGTGAACTCTCTGTTCCAAGCCGCTGAGAAGTGGCTGCATTCTTGTCATGTGAGCCACCC 1423
Query 1385 TGATTTCCTCTTCTTCTGCCGTCGTTGAGTAGGGTATGAAGTTGTGACGCACTTTGAGAG 1444
|||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 1424 TGATTTCCTCTTCTTCTGCCGTCGCTGAGTAGGATATGAAGTTGTGAGGCACTTTGAGAG 1483
Query 1445 AGTTTCAAAAAGAAACTCAAAA-CTGTTGATATGGAGGGTTGTTGTCAGATTCAGGTTTA 1503
||||| |||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1484 AGTTTTAAAAAGAAACTCAAAAACTGTTGATATGG-G--TTGTTGTCAGATTCAGGTTTA 1540
Query 1504 AAAACGAGTTGATTTTTATGTCTGTAAGTTATA--GATAAAACGAATTTTGTTTGGTCAG 1561
||| ||||||| |||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 1541 AAAG-GAGTTGAGTTTTATATCTGTAAGTTATATAGATAAA-CGAATTTTGTTTGGTCAG 1598
Query 1562 -A--TAATGTATGTGAACCGTGGG 1582
| ||||||||||||||| ||||
Sbjct 1599 CAGATAATGTATGTGAACCCTGGG 1622
> Ahg346633 jgi|Araly1|346633|fgenesh1_pg.C_scaffold_5000025
Length=783
Score = 913 bits (494), Expect = 0.0
Identities = 601/653 (92%), Gaps = 6/653 (1%)
Strand=Plus/Plus
Query 763 ATTCATCTCTTAAATCAAGGCGTCCTGGTGATAGTAGCGACAGTGATTTTCGGGATTCAA 822
|||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 134 ATTCATCTCTTAAACCAAGGCGTCCAGGTGATAGTAGCGACAGCGATTTCCGGGATTCAA 193
Query 823 GTAGCGATGTTAGCAGCGATAGTGATTCCGAGCGGGTTTCTGCTAGAGTAGACTGTATCT 882
|||||||||| ||||||||||||||||| || |||||||||||||| | ||| |||||
Sbjct 194 GTAGCGATGTCAGCAGCGATAGTGATTCTGAACGGGTTTCTGCTAGTCTGGACCATATCT 253
Query 883 CATTGAGGGATCAACATCAGGAAGACTCTTCCAGTGATGATGGCGAACCTTTAGGCTCTC 942
||||||||||||||||||||||||| || ||||||||||||||||||||| || ||||||
Sbjct 254 CATTGAGGGATCAACATCAGGAAGATTCATCCAGTGATGATGGCGAACCTATAAGCTCTC 313
Query 943 AAGGTCGTTTGATGTTTGAGTATCTTGAAAGAGACCTTCCATACATCCGTGAACCTTTTG 1002
| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 314 AGGGTAGTTTGATATTTGAGTATCTTGAAAGAGACCTTCCATACATCCGTGAACCTTTGG 373
Query 1003 CTGATAAGGTCTTGGACCTCGCAGCTCAGTTTCCCGAGCTAATGACGCTGAGAAGCTGTG 1062
| || |||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 374 CCGACAAGGTCTTTGACCTCGCAGCTCAGTTTCCCGAGCTGTTGACGCTGAAAAGTTGTG 433
Query 1063 ACTTACTTCGGTCAAGCTGGTTTTCTGTTGCATGGTACCCAATTTACAGAATACCCACAG 1122
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 434 ACTTACTTCCGTCAAGCTGGTTTTCTGTGGCATGGTACCCAATTTACAGAATACCCACAG 493
Query 1123 GACCGACACTGAAGGACCTGGATGCTTGTTTCTTGACGTATCATTCCCTACACACATCTT 1182
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 494 GACCGACACTCAAGGACCTGGATGCTTGTTTCTTGACGTATCATTCCCTACACACACCGT 553
Query 1183 TTGGAGGTGAAGGCAGTGAACAATCAATGAGCCTTACGCAACCAAGGGAGAG-CGAGAAG 1241
||||||||||||||||| ||||||||||||||||||||| ||||||||| | | | |||
Sbjct 554 CTGGAGGTGAAGGCAGTGCACAATCAATGAGCCTTACGCAGCCAAGGGAGTGTC-ATAAG 612
Query 1242 ATGTCATTGCCTGTGTTTGGGCTTGCTTCATACAAGTTCAGAGGTTCATTATGGACACCC 1301
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 613 ATGTCATTGCCTGTGTTTGGGCTCGCTTCATACAAGTTCAGAGGTTCTTTATGGACACCC 672
Query 1302 -ATTGGGGGTTCGGAGCACCAGCTCGTGAACTCTCTGTTCCAAGCCGCTGACAAA-TGGC 1359
|| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 673 GAT-GGGGGTTTGGAGCACCAGCTCGTGAACTCTCTGTTCCAAGCTGCTGA-AAAGTGGT 730
Query 1360 TGCATTCTTGTCATGTCAGCCACCCTGATTTCCTCTTCTTCTGCCGTCGTTGA 1412
||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 731 TGCGTTCTTATCATGTCAGCCACCCTGACTTCCTCTTCTTCTGCCGCCGTTGA 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62315640820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5