BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01320.3 Length=2662 Score E Sequences producing significant alignments: (Bits) Value Ahg484044 jgi|Araly1|484044|fgenesh2_kg.5__36__AT2G01320.2 3504 0.0 > Ahg484044 jgi|Araly1|484044|fgenesh2_kg.5__36__AT2G01320.2 Length=2428 Score = 3504 bits (1897), Expect = 0.0 Identities = 2175/2305 (94%), Gaps = 36/2305 (2%) Strand=Plus/Plus Query 1 GTTTGGAGCCTTGGTTGGTTCTTACTTGTTACTTTGCTTCGTACGGATTTGAAGGCTTTA 60 |||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 1 GTTTGGAGCCTTGGTTGGTTCTTACTTG-TACTTTGCTTCGTAC---------GGCTTTA 50 Query 61 CCTCACCGGAGCTTCCAAGTAGAAGACGACACTGAGTCACTGACACAGGG--ATACAAAT 118 ||||||||||||||||||| | ||| | || || ||||||||||||| ||||| || Sbjct 51 CCTCACCGGAGCTTCCAAG--G-AGA--AGAC-GA--CACTGACACAGGGATATACAGAT 102 Query 119 TATGGCGCCTTTTGGCGGGAAATCTTTAGCGGACGTTGTTTCTGGCATCGGAGGGAATGG 178 ||||||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||| Sbjct 103 TATGGCGCCTTTTGGCGGGAAATCTGTAGTGGATGCTGTTTCTGGCATCGGAGGGAATGG 162 Query 179 TGTT-GGCGGGGCTCTGGCTGCGGTGGCCGCCGCTCTGTTGGTCCGCCTCTTCGCTGGAC 237 ||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 163 AGTTGGGC-GGGCTCTGGCTGCGGTGGCCGCCGCTCTGTTGGTCCGCCTCTTTGCTGGAC 221 Query 238 CTGGCATCGCTCTCTTACCTGAAGACGAAGCTGAAGATGATTACGCTGAGACGGAAGACG 297 | |||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||| Sbjct 222 CCGGCATCGCCCTCTTACCTGAAAATGAAGCTGACGATGATTACGCTGAGACGGAAGACG 281 Query 298 GTGGTGGTGA----T-T-C------AATTCGTCCGGTGACAATCCGTTGGAGGAACATCA 345 |||||||||| | | | ||||||||||||||||||||||||||||||||||| Sbjct 282 GTGGTGGTGATTCTTCTCCGGGGAAAATTCGTCCGGTGACAATCCGTTGGAGGAACATCA 341 Query 346 CCTGCTCGCTCTCCGATAAGTCCTCCAAATCGGTGAGGTTTTTGTTGAAAAATGTATCCG 405 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | Sbjct 342 CCTGCTCGCTCTCCGATAAGTCCTCCAAATCGGTGCGGTTTTTGTTGAAAAATGTCTCTG 401 Query 406 GAGAAGCAAAACCTGGGAGGTTGCTAGCGATTATGGGTCCTTCTGGTTCTGGGAAAACAA 465 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 402 GAGAAGCAAAACCTGGGAGGTTGCTAGCGATAATGGGTCCTTCTGGATCTGGGAAAACCA 461 Query 466 CATTGCTCAATGTTTTAGCAGGACAGCTTAGTTTATCTCCACGTTTGCATTTGTCAGGTC 525 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 462 CATTGCTCAATGTTTTAGCTGGACAGCTTAGTTCATCTCCACGTTTGCATTTGTCAGGTC 521 Query 526 TCTTGGAGGTTAATGGCAAACCGAGCTCTAGCAAAGCTTATAAGCTTGCGTTTGTGAGAC 585 |||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||| |||| Sbjct 522 TCTTGGAGGTTAATGGGAAACCAAGCTCCAGCAGAGCTTATAAGCTTGCGTTTGTCAGAC 581 Query 586 AGGAGGATCTCTTCTTTTCTCAGTTAACTGTCAGGGAAACACTTTCTTTTGCAGCCGAGC 645 |||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||| Sbjct 582 AGGAGGATCTCTTCTTCTCGCAGTTGACTGTCAGGGAAACACTTTCTTTCGCAGCCGAGC 641 Query 646 TTCAGCTTCCGGAGATCTCTTCTGCTGAGGAGAGGGATGAGTATGTCAACAACCTCTTGC 705 ||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||| Sbjct 642 TTCAGCTTCCGGAGATCTCTTCTCCTGAGCAGAGGGATGACTATGTGAACAACCTCTTGC 701 Query 706 TCAAACTTGGTCTGGTCAGCTGTGCAGATTCATGTGTTGGCGATGCTAAAGTTCGTGGGA 765 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 702 TCAAACTTGGTCTGGTCAGCTGTGCAGATTCGTGTGTTGGCGATGCAAAAGTTCGTGGCA 761 Query 766 TCAGCGGTGGAGAGAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTG 825 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 TCAGCGGTGGAGAAAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTG 821 Query 826 TCATATTTGCTGATGAACCTACCACTGGGCTTGATGCCTTCCAGGCTGAGAAAGTGATGG 885 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 822 TCATATTTGCTGATGAACCCACAACTGGGCTTGATGCCTTCCAGGCTGAGAAAGTGATGG 881 Query 886 AGACATTGCAAAAGCTTGCACAGGATGGACATACTGTGATCTGCTCCATACACCAGCCTA 945 | |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| Sbjct 882 AAACATTGCAAAAGCTTGCACAAGATGGACACACTGTGATCTGCTCCATTCACCAGCCTA 941 Query 946 GAGGTTCGGTGTACGCTAAATTTGACGACATTGTGTTACTTACAGAAGGAACTCTAGTCT 1005 ||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| Sbjct 942 GAGGTTCGGTGTATGCTAAATTTGACGACATTGTGTTACTTACAGAAGGAGCTTTAGTCT 1001 Query 1006 ATGCCGGCCCTGCAGGAAAAGAACCTCTGACATATTTCGGGAACTTCGGGTTCCTTTGCC 1065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 ATGCCGGCCCTGCAGGAAAAGAACCTCTGACATATTTCGGGAACTTCGGGTTCCTTTGCC 1061 Query 1066 CTGAGCATGTGAACCCTGCTGAGTTTCTTGCTGATCTTATATCTGTTGACTATAGCTCTT 1125 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1062 CAGAGCATGTAAACCCTGCTGAGTTTCTTGCTGATCTTATCTCTGTTGACTATAGCTCTT 1121 Query 1126 CGGAAACGGTCTACTCTTCGCAGAAGAGAGTACATGCTCTTGTTGATGCATTCTCCCAGC 1185 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1122 CGGAAACTGTCTACTCTTCGCAGAAGAGAGTACATGCTCTTGTTGATGCGTTCTCCCAGC 1181 Query 1186 GTTCATCATCGGTTCTTTATGCCACTCCCCTCAGCATGAAAGAAGAAACAAAGAACGGCA 1245 |||||||||| ||||||||||| ||||||||| |||| ||||| |||||||||||| ||| Sbjct 1182 GTTCATCATCTGTTCTTTATGCTACTCCCCTCGGCATAAAAGATGAAACAAAGAACAGCA 1241 Query 1246 TGAGACCTCGCAGAAAAGCCATTGTTGAGAGAACAGATGGTTGGTGGAGGCAGTTTTTCT 1305 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 1242 TGAGACCTCGCAGAAAAGCCTTTGTTGAGAGAAAAGATGGTTGGTGGAGGCAGTTTTTCT 1301 Query 1306 TGCTGCTTAAACGTGCATGGATGCAGGCTTCTCGGGATGGGCCAACAAACAAAGTCCGTG 1365 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1302 TGCTGCTTAAGCGTGCATGGATGCAGGCTTCTCGAGATGGGCCAACAAACAAAGTCCGTG 1361 Query 1366 CAAGAATGTCTGTTGCATCTGCTGTGATATTTGGGTCTGTTTTCTGGAGAATGGGGAAGT 1425 ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| | Sbjct 1362 CAAGAATGTCTGTTGCATCAGCTCTGATATTTGGGTCCGTTTTCTGGAGAATGGGGAAAT 1421 Query 1426 CTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGGTTGCTGCAATAAACACGGCAA 1485 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1422 CCCAGACATCAATTCAGGACAGAATGGGTTTGCTTCAGGTTGCTGCAATAAACACGGCAA 1481 Query 1486 TGGCAGCTCTTACAAAGACAGTTGGTGTCTTTCCTAAAGAGCGTGCCATAGTGGATAGAG 1545 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1482 TGGCAGCTCTCACAAAGACAGTTGGTGTCTTTCCTAAAGAGCGTGCCATTGTGGATAGAG 1541 Query 1546 AACGATCCAAAGGGTCTTATTCTTTAGGCCCTTACCTGCTCTCCAAAACAATAGCTGAAA 1605 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1542 AACGGTCCAAAGGGTCTTATTCTTTAGGCCCTTACCTGCTCTCCAAAACAATAGCTGAAA 1601 Query 1606 TTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCC 1665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1602 TTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCC 1661 Query 1666 TTAATCCCACTTTGTCAAGATTTGGAAAATTTTGTGGGATAGTGACTGTGGAGTCATTTG 1725 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1662 TTAATCCCACTTTGTCAAGATTTGGAAAATTTTGTGGGATAGTGACTGTGGAGTCTTTTG 1721 Query 1726 CTGCGTCTGCAATGGGTCTAACTGTTGGAGCTATGGTCCCAAGCACAGAAGCTGCAATGG 1785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1722 CTGCGTCTGCAATGGGTCTAACTGTTGGAGCTATGGTCCCAAGCACAGAAGCTGCAATGG 1781 Query 1786 CCGTGGGACCATCTCTCATGACAGTTTTCATCGTATTTGGAGGTTACTATGTCAATGCAG 1845 | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1782 CTGTAGGACCATCTCTCATGACAGTTTTCATCGTGTTTGGAGGTTACTATGTCAATGCAG 1841 Query 1846 ACAACACCCCAATCATCTTCCGTTGGATTCCTCGTGCTTCATTGATCAGATGGGCCTTCC 1905 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1842 ACAACACCCCAATTATCTTCCGTTGGATTCCTCGTGCTTCATTGATCAGATGGGCCTTCC 1901 Query 1906 AGGGACTCTGTATCAACGAATTCAGCGGCCTCAAGTTTGATCATCAGAACACTTTTGACG 1965 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1902 AGGGACTCTGCATCAACGAATTCAGCGGCCTCAAGTTTGATCATCAGAACACTTTTGACG 1961 Query 1966 TCCAAACTGGAGAACAGGCGCTAGAACGACTGTCGTTTGGAGGAAGGCGGATAAGGGAGA 2025 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1962 TCCAAACTGGAGAACAGGCGCTAGAACGACTGTCGTTTGGAGGAAGGCGTATAAGGGAGA 2021 Query 2026 CGATAGCAGCTCAAAGCCGGATTCTGATGTTCTGGTATAGCGCCACGTACCTTCTCCTGG 2085 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2022 CGATAGCAGCTCAAAGCCGGATTCTGATGTTCTGGTATAGCGCAACGTACCTTCTCCTGG 2081 Query 2086 AGAAAAACAAGCCAAAGTATCAAAAGCTAGAGCTTCTTGTTGACAATGGAGAAACTG-GT 2144 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 2082 AGAAAAACAAGCCAAAGTATCAAAAGCTGGAGCTTCTTGTTGACAATGGAGAAACTGAG- 2140 Query 2145 AATTCAGGAGTCCAACTGGATAAAGCAGAGGTTGATCAAACGGAGAAACCTGAAGACGAT 2204 ||| ||||||| || |||||| ||||||||||||||||| ||||| |||||||||| ||| Sbjct 2141 AATCCAGGAGTGCAGCTGGATGAAGCAGAGGTTGATCAAGCGGAGGAACCTGAAGATGAT 2200 Query 2205 GATATCAATCAACCACTTGACGATCAAAATCAAACATCGGATTCGGATGATGAGCTTGAC 2264 |||||||| || |||||| | |||||||||||| ||||||||||||| |||||||||||| Sbjct 2201 GATATCAAGCAGCCACTTAAGGATCAAAATCAAGCATCGGATTCGGAAGATGAGCTTGAC 2260 Query 2265 GAAATCCGTCCCTTTGTCCTCGAAG 2289 |||||||||||||||||||| |||| Sbjct 2261 GAAATCCGTCCCTTTGTCCTTGAAG 2285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100405885820 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5