BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01340.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322480 jgi|Araly1|322480|fgenesh1_pm.C_scaffold_5000024 905 0.0
> Ahg322480 jgi|Araly1|322480|fgenesh1_pm.C_scaffold_5000024
Length=633
Score = 905 bits (490), Expect = 0.0
Identities = 599/649 (92%), Gaps = 17/649 (3%)
Strand=Plus/Plus
Query 61 ATGGGTAACAGTTTAGGCGGCAAGAAAACGACCAAAGTCATGAAGATAGACGGCGAGACT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTAATAGTTTAGGCGGCAAGAAAACGACCAAAGTCATGAAGATAGACGGCGAGACT 60
Query 121 TTTAAACTGAAAACTCCGGTGACGGCTGAGGAGGTCTTAAAAGACTTTCCCGGCCACGTC 180
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 61 TTTAAACTGAAAACTCCGGTGACGGCGGAGGAGGTCTTGAAAGACTTTCCCGGCCACGTT 120
Query 181 TTGTTAGACTCCGAATCCGTCAAGCACTACGGTGCCCGAGCCAAACCACTTGAGGCGAAG 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTGTTAGACTCTGAATCCGTCAAGCACTACGGTGCCCGAGCCAAACCACTTGAGGCAAAG 180
Query 241 CAGAGGTTGGAGGCGAAGCGGCTTTATTTTGTGGTGGAGCCGGTGAAAGAGTGTCCACCG 300
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 181 CAGAGGTTGGAGGCGAAGCGGCTATATTTCGTGGTGGAGCCGGTGAAAGAGTGTCCACCG 240
Query 301 AGAAGGGTAAGATCAGGAATTCACGTGAGTGCAAAGGAGAGGCTTGAGAGTCTCATGCTG 360
|||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 241 AGAAGGGTAAGATCGGGAATCCACGTGAGTGCCAAGGAGAGGCTTGAGAGCCTCATGCTT 300
Query 361 GCCCGGAGATCGTCTTCCGATCTCTCCATACTCAAACCACCAGGAGGATGGACGACGGAG 420
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GCCCGGAGATCCTCCTCCGATCTCTCCATACTCAAACCAGCAGGAGGATGGACGACGGAG 360
Query 421 GAAGAAGAAGGAGCGGTGAGGAGGGTGAAGGTGAGGATTCCCAAAGCTGAGCTTGAAA-A 479
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |
Sbjct 361 GAAGAAGAAGGAGCGGTGAGGAGGGTGAAAGTGAGGATTCCCAAGGCGGAGCTTGAAAGA 420
Query 480 GCTCGTTAAAGAAGGAGCCACCGAAGCCGAAGCTACGCAGAAGATCGCTGCTCTCTTTAT 539
||||| || ||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 421 -CTCGTCAAGGAAGGAGCCACCGAAGCCGAAGCCACCCAAAAGATCGCTGCTCTCTTTAT 479
Query 540 GGCCAAACAGAGGCAAGAGGAGGCATATCAGAACACACGACAGGACGAgcccgccaccac 599
||| ||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 480 GGCTAAACAGAGGCAAGAGGAGGCACATCAGAACACGCGGGAGGACGAGCCCGCCACCAC 539
Query 600 ggccaccgccaccgccaccaccaccgccacAAGAGGAGTCAAATCCCGTTTGAAACGAGT 659
| ||| ||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct 540 CGTCACTGCC---GCC---------GCCACAAGAGGAGTCAAATCCCGTCTGAAACGAGT 587
Query 660 GAGTTTCATGGCGGAAAGAGGAGGAGGGAGCGAGATCACTGTAGCTTGA 708
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 588 GAGTTTCATGGCGGAAAGAGGAGGA---AGCGAGATCACTGTAGCTTGA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5