BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01470.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484065 jgi|Araly1|484065|fgenesh2_kg.5__57__AT2G01470.1 1978 0.0
Ahg916681 jgi|Araly1|916681|Al_scaffold_0008_1432 745 0.0
> Ahg484065 jgi|Araly1|484065|fgenesh2_kg.5__57__AT2G01470.1
Length=1426
Score = 1978 bits (1071), Expect = 0.0
Identities = 1312/1423 (92%), Gaps = 37/1423 (3%)
Strand=Plus/Plus
Query 2 GGACTTGGCATTGAGCTCGAGAGACAGACACGGAGGATGGCGAATCAGAGTACAGAGACG 61
|||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GGACTTCACATTGAGCTC--GAGAC--ACACGGAGGATGGCGAATCAGAGTACAGAGACG 56
Query 62 AATCAACCGTCGAATATGCAGACTTACGGTGTACCGATTTACGCCGCCGACTGGATTCCG 121
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 57 AATCAACCGTCGAATATGCAGACTTACGGTGTACCGATTTACGCCGTCGATTGGATTCCG 116
Query 122 GAGGTAGATGTCAGATCCAAAATCATAATGGATCCGGAGAAATCTGAAGATGATGATGAG 181
||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 117 GAGGTAGCTGTCAGATCGAAAATCATAATGGATCCGGATAAATCCGAAGATGATGATGAG 176
Query 182 ---TCGtcttcttc-t--tc-t--tcttcttcCCGGAGCTGCATCGTTTTGTCCGGCGGA 232
||||| ||||| | || | ||||||||||||||||||||||||||||||||||||
Sbjct 177 TCTTCGTCGTCTTCGTCGTCGTCGTCTTCTTCCCGGAGCTGCATCGTTTTGTCCGGCGGA 236
Query 233 GGCGGAGAGGGACGAAGTGGAATCTCTAATGTCATATTAATATGCCGTGTTGATCTAAAC 292
|||||||||||| |||| |||||| ||||||| || ||||| || |||||||||||||||
Sbjct 237 GGCGGAGAGGGAAGAAGCGGAATCCCTAATGTTATCTTAATCTGTCGTGTTGATCTAAAC 296
Query 293 ACCAATTCTCTCTCGGAACAACCTCTGGGTAGGCTTGTGGTTGGCTCTGATCTGCCTTAT 352
|||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 297 ACCAATTCTCTCTCGGAACAACCTTTGGGTAGGCTTGTGGTTGGCACTGATCTACCTTAT 356
Query 353 CGGATGGCTGTTCATCCTCGGGAAGGTGGTCTTATTTGCGCGTTGCCTAACAGTTGCAAA 412
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 357 CGTATGGCTGTTCATCCTCGGGAAGGTGGTCTTATTTGCGCATTGCCTAACAGTTGCAGA 416
Query 413 CTGTTTCATTGGGAAGACATTATGAGCCGAGAGGATAATCAGGCTGGT---GAGTCGGAG 469
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 417 CTGTTTCATTGGGAAGACATTATGAGCCGAGAGGATAATCAGGCTGGTGAAGAGTCAGAG 476
Query 470 GAAGTGATTAAAGAGTTAAGAGATGTTGGACAACAGTTGGCTCTGGCGTTT-AATCCGGA 528
|||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||| |||
Sbjct 477 AAAGTGATTAAAGAGTTAAAAGATGTTGGACAACAATTGGCTCTGGC-TTTCGATCAGGA 535
Query 529 GGGGTCTGTTCTTGCTGCTGGTGCGGAGGATGGGACTTTGAGGGTTTTTAAATGGCCTAG 588
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 536 GGGGTCTGTTCTCGCCGCTGGTGCGGAGGATGGGACTTTGAGGGTTTTTGAATGGCCCAG 595
Query 589 CATGAATACTTTACTTAATGAGTCCCAGGCTCATTCTTCAGTTAAATGCCTTACTTTCAG 648
|||||| || |||||||||||||| ||||||||||| ||||||||| |||| ||||||||
Sbjct 596 CATGAAAACGTTACTTAATGAGTCTCAGGCTCATTCATCAGTTAAAAGCCTGACTTTCAG 655
Query 649 CGAAAGTGGTCAATTTCTTGTATCTCTTGGCGGTCCAGTTTGTCGAGTTTGGGACGTGAA 708
|||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 656 CGAAAGTGGTAAATTTCTTGTATCTCTTGACGGTCCAGTTTGTCGGGTTTGGGATGTGAA 715
Query 709 TGCTTCTGCTGCTGTTGCCAGTCTATCAAAAGAGAAGGACGAGATGTTTGCCTCCTGTAG 768
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGCTTCTGCTGCCGTTGCCAGTCTATCAAAAGAGAAGGACGAGATGTTTGCCTCCTGTAG 775
Query 769 ATTCTCTGTAGACAGTGCAGGCAATGAAGTTCTTTACATTGCTGCAAACACTGAACGTGG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ATTCTCTGTAGACAGTGCAGGCAATGAAGTTCTTTACATTGCTGCAAACACTGAACGTGG 835
Query 829 TGGGAGTATTATAACATGTGATACAAAATTATGGAAAAGAAAATGGTCGAAGCCTATAAA 888
||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 836 TGGGAGTATTATAACATATGATTCAAAATCATGGAAAAGAAAATGGTCGAAGCCTATAAA 895
Query 889 AAAGAACTCTATATCAGCTTTTAATGTCTCAGCTGATGGGAAGCTTCTTGCAATAGGAAC 948
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 896 AAAGAACTCTATATCAGCCTTTAATGTCTCAGCTGATGGAAAGCTTCTTGCAATAGGCAC 955
Query 949 CCTTGAAGGAGATGTTTTAATACTTGAATCGACAAGAATGCAAACTATCCAAGTCGTCAA 1008
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 956 CCTTGAAGGAGATGTTTTAATACTTGAACCGACGAGAATGCAAACTATCCAAGTCGTCAA 1015
Query 1009 GAAAGCGCATCTTGGTTTGGTCACAGCACTGACTTTCTCTCCTGATTCAAGGGGATTAGT 1068
|||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1016 GAAAGCGCATCTCGGTTTGGTCACAGCGCTGACTTTCTCCCCTGATTCAAGGGGCTTAGT 1075
Query 1069 GTCGGTATCTTTTGACTCAAGGGCAAGGCTGACCATGATTGAACAAAAGGGGGACAAACC 1128
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1076 GTCGGTATCTTTCGACTCAAGGGCAAGGCTGACCATGATTGAACAAAAGGGTGACAAACC 1135
Query 1129 TGGAGTAAGGTGGTGGCTACTGGTTTTATTGATAGTGTTGCTATACGTGGTTGCATACTA 1188
|||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||
Sbjct 1136 TGGAATAAGGTGGTGGCTACTGATTTTATTGGTAGTGTTACTATACGTGGTTGCATATTA 1195
Query 1189 TTATATGAAGGCAAAGGGTATCATACCTTAGAAAGGCCTTTAAGTGACCACACAGGACGA 1248
||||||||||||||||||| |||||||||| |||||| | ||| | || ||||
Sbjct 1196 TTATATGAAGGCAAAGGGTGTCATACCTTAAAAAGGC----A-----CCAGA-AG-ACGA 1244
Query 1249 TACAGCGGAATGGCTT-GTAACCAACATATCATACGATTACGCTTTGAGTTAGCTTTTTA 1307
||||||||| |||||| |||||| |||||| ||||| | | |||||||||||||||||
Sbjct 1245 TACAGCGGAGTGGCTTTGTAACCGACATATTATACGCT--C--TTTGAGTTAGCTTTTTA 1300
Query 1308 TGTTTGACATCTACCAGAAACTTGCTTGCTTT-ATATCAATAAAACATGTAAACTAACAC 1366
|||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1301 CGTTTCACATCTACCAGAAACTTGCTTGCTTTTATATCAATAAAAAATGTAAACTAACAC 1360
Query 1367 T-AAAACAGCAAAAGTTACAATTTGTTTCCTCttttttttttt 1408
| ||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 1361 TTAAAACAGTAAAAATTACAATTTGTTTCC-CTTTTTTTTTTT 1402
> Ahg916681 jgi|Araly1|916681|Al_scaffold_0008_1432
Length=642
Score = 745 bits (403), Expect = 0.0
Identities = 525/582 (90%), Gaps = 15/582 (3%)
Strand=Plus/Plus
Query 555 AGGATGGGACTTTGAGGGTTTTTAAATGGCCTAGCATGAATACT-TTACTTAATGAGTCC 613
||||||||||||||||||||||| ||||||| |||||||| | | ||||||||||||||
Sbjct 8 AGGATGGGACTTTGAGGGTTTTTGAATGGCCCAGCATGAA-AGTATTACTTAATGAGTCT 66
Query 614 CAGGCTCATTCTTCAGTTAAATGCCTT-ACTTTCAGCGAAAGTGGTCAA-TTTCTTGTAT 671
||||| ||| | ||||||||| | ||| |||||||| ||||||||| || ||||||||||
Sbjct 67 CAGGCACATGCATCAGTTAAAAG-CTTAACTTTCAGTGAAAGTGGT-AAGTTTCTTGTAT 124
Query 672 CTCTTGGCGGTCCAGTTTGTCGAGTTTGGGACGTGAATGCTTCTGCTGCTGTTGCCAGTC 731
||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 125 CTCTTGGAGGTCCAGTTTGTCGGGTTTGGGATGTGAATGCTTCTGCTGCCATTGCCAGTC 184
Query 732 TATCAAAAGAGAAGGACGAGATGTTTGCCTCCTGTAGATTCTCTGTAGACAGTGCAGGCA 791
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TATCAAAAGAGAAGGATGAGATGTTTGCCTCCTGTAGATTCTCTGTAGACAGTGCAGGCA 244
Query 792 ATGAAGTTCTTTACATTGCTGCAAACACTGAACGTGGTGGGAGTATTATAACATGTGATA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 245 ATGAAGTTCTTTACATTGCTGCAAACACTGAACGTGGTGGGAGTATTATAACATGGGATT 304
Query 852 CAAAATTATGGAAAAGAA-AATGGTCGAAGCCTAT-AAAA-AAG-AACTCTATATCAGCT 907
|||||| ||||||||||| || | || |||| ||| |||| || ||||||||||| ||
Sbjct 305 CAAAATCATGGAAAAGAAGAA-GTTCAAAGCTTATTAAAAGAAACAACTCTATATCTGCC 363
Query 908 TTTAATGTCTCAGCTGATGGGAAGCTTCTTGCAATAGGAACCCTTGAAGGAGATGTTTTA 967
||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 364 TTTAATGTCTCAGCTGATGGGAAGCTTCTTGCAATAGGAACACTCGAAGGAGATCTTTTA 423
Query 968 ATACTTGAATCGACAA-GAATGCAAACTATCCAAGTCGTCAAGAAAGCGCATCTTGGTTT 1026
||| |||| ||||||| || ||||||||| |||||||||||||||||| ||||| |||||
Sbjct 424 ATAATTGATTCGACAAAGA-TGCAAACTAACCAAGTCGTCAAGAAAGCTCATCTCGGTTT 482
Query 1027 GGTCACAGCACTGACTTTCTCTCCTGATTCAAGGGGATTAGTGTCGGTATCTTTTGACTC 1086
||||| |||||||||||||| |||||||||||| | |||||||| ||||||||||||||
Sbjct 483 AGTCACCGCACTGACTTTCTCCCCTGATTCAAGGTGCTTAGTGTCAGTATCTTTTGACTC 542
Query 1087 AAGGGCAAGGCTGACCATGATTGAACAAAAGGG-GGACAAAC 1127
|||||||||||| ||| |||| |||||||||| ||| ||||
Sbjct 543 AAGGGCAAGGCTAACCGTGATCAAACAAAAGGGTGGA-AAAC 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5