BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01540.1
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484071 jgi|Araly1|484071|fgenesh2_kg.5__63__AT2G01540.1 989 0.0
> Ahg484071 jgi|Araly1|484071|fgenesh2_kg.5__63__AT2G01540.1
Length=781
Score = 989 bits (535), Expect = 0.0
Identities = 620/658 (94%), Gaps = 18/658 (3%)
Strand=Plus/Plus
Query 259 AAATGGATCA-AAAGCCTCTTGGATTGCTCACGATCCACGTCAAGA-GAGGGATTAATCT 316
|||||||||| ||| |||||||| ||||||||||||||| |||| | |||||||||||||
Sbjct 103 AAATGGATCAGAAA-CCTCTTGGCTTGCTCACGATCCACATCAA-ACGAGGGATTAATCT 160
Query 317 CGCCATTCGCGACCATCGTAGCAGCGATCCTTACATCGTTCTCAACGTCGCCGATCAGAC 376
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 161 CGCCATTCGCGACCATCGTAGCAGCGATCCTTACATCGTTCTCACCGTCGCCGATCAGAC 220
Query 377 ATTGAAGACACGTGTGGTGaaaaaaaaTTGTAACCCAGTATGGAATGAAGAAATGACTGT 436
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 221 ATTGAAGACACGTGTGGTGAAAAGAAATTGTAACCCAGTATGGAATGAAGAAATGACTGT 280
Query 437 TGCTATCAAAGATCCTAATGTCCCAATCCGCTTGACAGTGTTTGATTGGGACAAGTTCAC 496
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 TGCTATCAAAGATCCCAATGTCCCAATCCGCTTGACAGTGTTTGATTGGGACAAGTTCAC 340
Query 497 AGGAGATGACAAAATGGGAGATGCGAACATAGACATTCAACCATACTTAGAGGCTTTGAA 556
|||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| | ||
Sbjct 341 AGGAGATGACAAAATGGGAGATGCAAACATTGACATCCAACCATACTTGGAGGCTCTCAA 400
Query 557 AATGGGGATGGAGCTTTTGAGGCTACCTAATGGGTGTGCTATCAAAAGGGTTCAACCATC 616
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 401 AATGGGGATGGAGCTTTTGAGGCTACCTAATGGATGTGCTATCAAAAGGGTTCAACCATC 460
Query 617 AAGGCACAATTGTTTATCTGATGAGAGTAGCATTGTTTGGAACAATGGTAAGATCACACA 676
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 461 AAGGCACAATTGTTTATCAGATGAGAGTAGCATTGTTTGGAACAATGGTAAGATTACGCA 520
Query 677 AGACTTGATCCTTAGACTTAACAATGTCGAATGTGGCGAGATTGAGATCATGCTTGAATG 736
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 521 AGACATGATCCTTAGACTTAACAATGTCGAATGCGGCGAGATTGAGATCATGCTTGAATG 580
Query 737 GCATGAAGGTGCTGGTTGCAGAGGTATCACTTCCTC-T-T-CCAAAGGTGGAGGCTCTTC 793
||||||||||||||||||||||||||||||||| || | | |||||||||| ||||||
Sbjct 581 GCATGAAGGTGCTGGTTGCAGAGGTATCACTTCTTCCTCTACCAAAGGTGG---CTCTTC 637
Query 794 CTCTACCTAAACTTATTAttgttctttctttctttcttt-ttt-t---gttgttgtgtat 848
|||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 638 CTCTACCTGAACTTATTATTGTTCTTTCTTTCTTTCTTTCTTTCTTTTGTTGTTGTGTAT 697
Query 849 c---aatctgttgttgttgtttcCATATGTATAAGCAACTCAAGTATGTTTTCTTGAT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GGTGAATCTGTTGTTGTTGTTTCCATATGTATAAGCAACTCAAGTATGTTTTCTTGAT 755
Score = 86.1 bits (46), Expect = 4e-16
Identities = 58/63 (92%), Gaps = 4/63 (6%)
Strand=Plus/Plus
Query 107 GAGCAATTGGGA-ACGAGAACGTGTTGAATAGTTGGGGACGAGATTA-CAAGCACCAATT 164
|||||||||||| | ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1 GAGCAATTGGGAGA-GAGAACGTGTTGAATAGTTGGGGACGAGAA-AGCAAGCACCAATT 58
Query 165 CAT 167
|||
Sbjct 59 CAT 61
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36293016984
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5