BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01570.1
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484073 jgi|Araly1|484073|fgenesh2_kg.5__65__AT2G01570.1 2569 0.0
> Ahg484073 jgi|Araly1|484073|fgenesh2_kg.5__65__AT2G01570.1
Length=2133
Score = 2569 bits (1391), Expect = 0.0
Identities = 1664/1789 (93%), Gaps = 45/1789 (3%)
Strand=Plus/Plus
Query 205 AAATGAAGAGAGATCATCACCAATTCCAAGGTCGATTGTCCAACCACGGGACTTCTTCTT 264
||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 145 AAATGAAGAGAGATCTTCATCAATTTCAAGGTCGATTGTCCAACCACGGGACTTCTTC-T 203
Query 265 CATCATCATCAATCTCTAAAGATAAGATGATGATGGTGAAAAAAGAAGAAGACGGTGGAG 324
|||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 204 --TCATCATC-A--TCTAAAGATAAGATGATGATGGTGAAAAAAGAAGAAGACGGT---G 255
Query 325 GTAACATGGACGACGAGCTTCTCGCTGTTTTAGGTTACAAAGTTAGGTCATCGGAGATGG 384
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GTAACATGGATGATGAGCTTCTCGCTGTTTTAGGTTACAAAGTTAGGTCATCGGAGATGG 315
Query 385 CGGAGGTTGCTTTGAAACTCGAACAATTAGAGACGATGATGAGTAATGTTCAAGAAGATG 444
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 316 CGGAGGTTGCTTTGAAACTCGAGCAATTAGAGACGATGATGGGTAATGTTCAAGAAGATG 375
Query 445 GTTTATCTCATCTCGCGACGGATACTGTTCATTATAATCCGTCGGAGCTTTATTCTTGGC 504
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 376 GTTTATCTCATCTCGCCACGGACACTGTTCATTATAATCCATCGGAGCTTTATTCTTGGC 435
Query 505 TTGATAATATGCTCTCTGAGCTTAATCCTCCTCCTCTTCCGGC-GAGTTCTAACGGTTTA 563
||||||||||||||||||||||||| |||| | | |||||| | |||| |||||||||
Sbjct 436 TTGATAATATGCTCTCTGAGCTTAA---TCCT-C-C-TCCGGCTG-GTTCCAACGGTTTA 488
Query 564 GATCCGGTTCTTCCTTCGCCGGAGATTTGTGGTTTTCCGGCTTCGGATTATGACCTTAAA 623
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 489 GATCCGATTCTTCCTTCGCCGGAGATTGGTGGTTTTCCGGCTTCGGATTATGACCTCAAA 548
Query 624 GTCATTCCCGGAAACGCGA-TT-T-ATCAG------TTTCCGGCGATTGATTCTTCGTCT 674
|||||||| || ||||||| || | ||||| ||||||||||||||||||||||||
Sbjct 549 GTCATTCCTGGTAACGCGATTTATCATCAGAATCAATTTCCGGCGATTGATTCTTCGTCT 608
Query 675 TCGTCGAATAATCAGAACAAGCGTTTGAAATCATGCTCGAGTCCTGATTCTATGGTTACA 734
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 609 TCGTCGAATAATCAGAGCAAGCGTTTGAAATCATGCTCGAGTCCTGATTCAATGGTTACA 668
Query 735 TCGACTTCGACGG-GTACGCAGATTGGTGGAGTCATAGGAACGACGGTGACGACAACCAC 793
|| || ||||||| | || ||||||||||||||||| || |||||||| |
Sbjct 669 TCCACCTCGACGGCG-ACACAGATTGGTGGAGTCATCGGCACGACGGT----------A- 716
Query 794 CACGACAACGACGGCGGCGGGTGAGTCAACTCGTTCTGTTATCCTGGTTGACTCGCAAGA 853
|| |||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 717 -ACTACAACGACGGCGGC---TGAGTCAACTCGTGCTGTTATCCTGGTTGACTCACAAGA 772
Query 854 GAACGGTGTTCGTTTAGTCCACGCGCTTATGGCTTGTGCAGAAGCAATCCAGCAGAACAA 913
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 773 GAACGGTGTTCGTTTAGTTCACGCGCTTATGGCTTGTGCTGAAGCAATCCAGCAGAACAA 832
Query 914 TTTGACTCTAGCGGAAGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCTCAAGCCGG 973
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 833 TTTGACTCTAGCGGAAGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCACAAGCCGG 892
Query 974 AGCTATGAGAAAAGTGGCTACTTACTTCGCCGAAGCT-TTAGCGCGGCGGATCTACCGTC 1032
||||||||||||||| |||||||| |||||||||||| || || |||||||||||||| |
Sbjct 893 AGCTATGAGAAAAGTCGCTACTTATTTCGCCGAAGCTCTT-GCACGGCGGATCTACCGCC 951
Query 1033 TCTCTCCGCCGCAGAATCAGATCGATCATTGTCTCTCCGATACTCTTCAGATGCACTTTT 1092
||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 952 TCTCTCCGCCGCAGAATCAAATCGACCATTCTCTCTCCGATACTCTTCAGATGCACTTTT 1011
Query 1093 ACGAGACTTGTCCTTATCTTAAATTCGCTCACTTCACGGCGAACCAAGCGATTCTCGAAG 1152
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 1012 ATGAGACTTGTCCTTATCTTAAATTCGCTCACTTTACGGCGAATCAAGCGATTCTTGAAG 1071
Query 1153 CTTTTGAAGGTAAGAAGAGAGTACACGTCATTGATTTCTCGATGAACCAAGGTCTTCAAT 1212
|||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||
Sbjct 1072 CTTTTGAAGGTAAGAAGAGAGTTCATGTCATTGATTTTTCTATGAACCAAGGTCTTCAAT 1131
Query 1213 GGCCTGCACTTATGCAAGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAA 1272
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GGCCTGCGCTTATGCAAGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAA 1191
Query 1273 CCGGAATTGGTCCACCGGCGCCGGATAATTCTGATCATCTTCATGAAGTTGGTTGTAAAT 1332
||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1192 CCGGAATTGGTCCGCCGGCGCCGGATAATTCTGATCATCTTCACGACGTTGGCTGTAAAT 1251
Query 1333 TAGCTCAGCTTGCGGAGGCGATTCACGTAGAATTCGAATACCGTGGATTCGTTGCTAACA 1392
|||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1252 TAGCTCAGCTTGCGGAGGTGATTCACGTTGAATTCGAATACCGTGGATTCGTCGCTAACA 1311
Query 1393 GCTTAGCCGATCTCGATGCTTCGATGCTTGAGCTTAGACCGAGCGATACGGAAGCTGTTG 1452
||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 1312 GCTTAGCCGATCTTGATGCGTCGATGCTTGAACTTAGACCGAGTGAGACGGAAGCTGTTG 1371
Query 1453 CGGTGAACTCTGTTTTTGAGCTACATAAGCTCTTAGGTCGTCCCGGTGGGATAGAGAAAG 1512
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1372 CGGTGAACTCTGTTTTCGAGCTCCATAAACTCTTAGGTCGTCCCGGTGGGATAGAGAAAG 1431
Query 1513 TTCTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGA 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 TTCTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGA 1491
Query 1573 ACCATAACGGACCGGTTTTCTTAGACCGGTTTACTGAATCGTTACATTATTATTCGACTC 1632
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1492 ACCATAACGGACCGGTTTTCTTAGACCGGTTTACTGAATCGTTACATTACTATTCGACTC 1551
Query 1633 TGTTTGATTCGTTGGAAGGAGTTCCGAATAGTCAAGACAAAGTCATGTCTGAAGTTTACT 1692
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 1552 TGTTTGATTCGTTGGAAGGAGTTCCGAGTAGCCAAGACAAAGTCATGTCCGAAGTTTACT 1611
Query 1693 TAGGGAAACAGATTTGTAATCTGGTGGCTTGTGAAGGTCCTGACAGAGTCGAGAGACACG 1752
|||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| || |
Sbjct 1612 TAGGGAAACAGATTTGCAATCTTGTGGCTTGTGAAGGTCCTGACCGGGTCGAGAGGCATG 1671
Query 1753 AAACGTTGAGTCAATGGGGAAACCGGTTTGGTTCGTCCGGTTTAGCGCCGGCACATCTTG 1812
||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 1672 AAACGCTGAGTCAATGGGGAAACCGGTTTGGTTCGTCCGGTTTTGCGCCGGCAAATCTCG 1731
Query 1813 GGTCTAACGCGTTTAAGCAAGCGAGTATGCTTTTGTCTGTGTTTAATAGTGGCCAAGGTT 1872
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1732 GGTCTAACGCGTTTAAGCAAGCGAGTATGCTTTTGTCAGTGTATAATAGTGGCCAAGGTT 1791
Query 1873 ATCGTGTGGAGGAGAGTAATGGATGTTTGATGTTGGGTTGGCACACTCGTCCACTCATTA 1932
||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1792 ATCGTGTGGAGGAGAATAATGGATGTTTGATGTTGGGTTGGCACACTCGCCCGCTCATTA 1851
Query 1933 CCACCTCCGCTTGGAAACTCTCGACGGCGGCGTACTGAGTTTGACTCGA 1981
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1852 CCACCTCCGCTTGGAAACTCTCGACGGCGGCGCACTGAGTTTGACTCGA 1900
Score = 287 bits (155), Expect = 3e-76
Identities = 209/233 (90%), Gaps = 11/233 (5%)
Strand=Plus/Plus
Query 2007 TCGAGTGAATTTGAGATTGAGATCAGTGGACCGGTGATGACATATGTTCGGACCAAGACC 2066
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1897 TCGAGTGAATTTGAGATTGAAATCAGTGGACCGGTGATGACATATGTTCGGACCCAGACC 1956
Query 2067 TAAACCGAACTGAATCGAACCGttttgccttttgtttattttatttattttcgttcactt 2126
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1957 AAAACCGAACTGAATCGAACCGGTTTGCCTTTTGTTTATTTTATTTATTTTCA--C-CT- 2012
Query 2127 gtttaaaattcttatat---a--tatcgttttGGTAGGTCATTTTTAA-TTTATGCCTTT 2180
||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||
Sbjct 2013 GTTTAAAATTCTTATATTTGAAATATCGTTTTCGTAGGTCATTTTTAAATTTATGCCTTT 2072
Query 2181 TT-GGGATCAATTTTTAATAGGCTGAGTTTGTATTTATTAATAAATTATCTTT 2232
|| ||||||||||| ||||||||||| |||||||||||| ||| ||| |||
Sbjct 2073 TTTGGGATCAATTTAAAATAGGCTGAGAATGTATTTATTAAAAAACTATGTTT 2125
Score = 119 bits (64), Expect = 1e-25
Identities = 108/126 (86%), Gaps = 16/126 (13%)
Strand=Plus/Plus
Query 2 TGAATGATGATTGAAGTGGTAGTAGCAGTGAAAAACAAAAGCAATCCAATCCCAAACCCA 61
|||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||
Sbjct 1 TGAATGATGATTGAAGTGGTAGTAGCAGTGAAAAAC-AAAGCAAT-C---CCC--ACCCA 53
Query 62 TTTGCTCTTAAGATTCTTC-------ACATA-GAGAAGTCACATGTTCCTTCTTCTTCTT 113
||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct 54 TTTGCTCTTAAGATTCTTCCTTCTTCACATAAGAGAAGTCGCATGTCCCTTCTTCTTCTT 113
Query 114 CCTTCA 119
| ||||
Sbjct 114 C-TTCA 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86693397620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5