BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01590.1 Length=989 Score E Sequences producing significant alignments: (Bits) Value Ahg346658 jgi|Araly1|346658|fgenesh1_pg.C_scaffold_5000050 531 5e-150 > Ahg346658 jgi|Araly1|346658|fgenesh1_pg.C_scaffold_5000050 Length=504 Score = 531 bits (287), Expect = 5e-150 Identities = 374/414 (90%), Gaps = 14/414 (3%) Strand=Plus/Plus Query 170 CTCCGTCAAAGAAACCGTTAAAACTAAGAC-AAGTGAGCAAACAAATGGGAAGTCAAAAC 228 ||||||| ||||||||| ||||||||| | ||||||||||||||||||||| ||||||| Sbjct 92 CTCCGTCGAAGAAACCGGCAAAACTAAG-CAAAGTGAGCAAACAAATGGGAAATCAAAAC 150 Query 229 CAG------C---A--A-CGACGAGGCAACAAGCCTTCGATAGCACAGATTGAGAGAGCT 276 ||| | | | |||||||||||||||||||||||||| ||||| ||| |||| Sbjct 151 CAGCAATTACGGAAGCAGCGACGAGGCAACAAGCCTTCGATAGCTCAGATCGAGCGAGCA 210 Query 277 TTTGGCTCTGGATCATATCGTGATTCCGAAGGGGAAATGGATATGAATACGGTATTCGAT 336 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 211 TTTGGCGCTGGATCATATCGTGATTCCGAAGGGGAAATGGATATGAATACGGTATTCGAT 270 Query 337 GAGCTTCTATTAGGCCATGCTAATAAATTCGAAAGTAAGATCGAGAAGAAGCTACGGGAG 396 |||||| || ||||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 271 GAGCTTTTACTAGGCCATGCTAATAAATTCGAAAGTAAGCTGGAGAAGAAGCTACGAGAG 330 Query 397 ATTGGCGAAATCTTTGTAGCTCGAACAGAGCCTAAGCTTCGTTCCTCGGGGAAACCAGTT 456 ||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 331 ATTGGGGAAATCTTCGTAGCTCGAACAGAGCCTAAGCTCCGTTCCTCCGGGAAACCAGTT 390 Query 457 TTGATGTTTACAATTCAATGGATTCTTCCAATATGGATTATGTCACTGCTCGTAGCTTGT 516 ||||||||||| |||||||||||||||| |||||||||||||| |||||| |||||||| Sbjct 391 CTGATGTTTACACTTCAATGGATTCTTCCCATATGGATTATGTCTCTGCTCATAGCTTGT 450 Query 517 GGAGTTATCAAACTCCCTTTTAGCATCCCTTTCCTTGATGACTTGATCATGTGA 570 |||||||||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 451 GGAGTTATCAAACTCCCTTTTAGCCTCCCATTACTTGATGACTTGATCATGTGA 504 Score = 139 bits (75), Expect = 3e-32 Identities = 85/90 (94%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 46 ATGGCGGTGTTATCCACCATCTACTCCATCACCAGAGCTTCAACGCCTACTATGGCGTCT 105 |||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||| Sbjct 1 ATGGCGGTCTTATCCACCATCTTCTCTATCACCAGAGCTTCAACGCCTCCTATGGCGTCT 60 Query 106 CTAACTAATGACTCACCGTCTCCACTTCCT 135 ||||||||||||||||| |||||||||||| Sbjct 61 CTAACTAATGACTCACCCTCTCCACTTCCT 90 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36750491988 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5