BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01600.1 Length=2127 Score E Sequences producing significant alignments: (Bits) Value Ahg935879 jgi|Araly1|935879|scaffold_500070.1 2638 0.0 > Ahg935879 jgi|Araly1|935879|scaffold_500070.1 Length=1736 Score = 2638 bits (1428), Expect = 0.0 Identities = 1643/1743 (94%), Gaps = 29/1743 (2%) Strand=Plus/Plus Query 154 TCCGATGGGAACGCTACAGTCATGGAGAAAAGCCTATGGAGCCCTAAAAGACTCCACCAA 213 ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct 22 TCCGATGGGAACGCTTCAGTCATGGAGAAAAGCTTACGGAGCCCTAAAAGACTCCACCAA 81 Query 214 AGTCGGACTTGTCCGTGTCAACAGCGAATACGCCGATTTAGATGTTGCCATAGTCAAAGC 273 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 82 AGTCGGCCTTGTCCGTGTCAACAGCGAATACGCCGATTTAGATGTCGCCATAGTCAAAGC 141 Query 274 TACCAATCATGTTGAGTGTCCTCCCAAAGATCGCCATCTCAGAAAAATCTTCGCTGCAAC 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 TACCAATCATGTTGAGTGTCCTCCCAAAGATCGCCATCTCAGAAAAATCTTCGCTGCAAC 201 Query 334 ATCAGTGACTCGTGCTCGAGCAGATGTTGCTTATTGTATTCACGCCCTTTCACGGCGTTT 393 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 202 ATCAGTGACTCGTGCTCGAGCAGATGTTGCTTATTGTATTCACGCTCTTTCCCGGCGTTT 261 Query 394 GCATAAAACCAGGAATTGGACGGTTGCTTTGAAAACACTAATTGTGATACATCGGCTTCT 453 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 262 GCATAAAACCAGGAATTGGACGGTTGCTTTGAAAACACTAATTGTTATTCATCGGCTTCT 321 Query 454 AAGGGAAGGAGATCCAACTTTCAGAGAGGAACTATTGAATTTTTCGCAGAGAGGGCGGAT 513 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 322 AAGGGAAGGAGATCCAACTTTCAGAGAGGAACTATTGAATTTTTCGCAGAGAGGGCGAAT 381 Query 514 TTTGCAACTTTCTAATTTTAAGGATGATTCAAGTCCTATTGCTTGGGATTGTTCAGCTTG 573 |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 382 TTTGCAGCTTTCTAATTTTAAGGATGATTCAAGCCCTATTGCCTGGGATTGTTCAGCTTG 441 Query 574 GGTACGTACTTATGCATTGTTTCTTGAGGAACGGCTTGAATGCTTCAGGGTTTTAAAATA 633 |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 442 GGTACGTACTTATGCACTATTTCTCGAGGAACGGCTTGAATGCTTCAGGGTTTTAAAATA 501 Query 634 TGATACTGAGGCCGAACGTCTTCCGAAATCTAACCCAGGGCAGGATAAGGGGTATAGTAG 693 |||||||||||| ||||||||||| || |||| ||| ||||||||||||||||||||||| Sbjct 502 TGATACTGAGGCAGAACGTCTTCCCAAGTCTACCCCGGGGCAGGATAAGGGGTATAGTAG 561 Query 694 AACCAGGGATTTAGATGGTGAAGAACTCTTGGAGCAGTTGCCAGCTTTGCAGCAGCTTCT 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 562 AACCAGGGATTTAGATGGTGAAGAACTCTTGGAGCAGTTGCCAGCTTTGCAGCAGCTTCT 621 Query 754 CTATCGTCTCATCGGTTGCAGGCCGGAAGGTGCCGCTAACCACAATCATGTTATACAATA 813 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 622 CTATCGTCTCATCGGTTGCAGGCCAGAAGGTGCTGCTAACCACAATCATGTTATACAATA 681 Query 814 TGCACTTGCTCTGGTGTTGAAAGAGAGTTTTAAAGTCTATTGTGCTATTAATGATGGAAT 873 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 682 TGCACTTGCTCTGGTGTTGAAAGAGAGTTTTAAAGTCTATTGTGCTATTAATGATGGAAT 741 Query 874 CATCAATCTCATTGACAAGTTCTTTGAAATGGCAAAACATGAAGCCATCACTTCCCTTGA 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 742 CATCAATCTCATTGACAAGTTCTTTGAAATGGCAAAACATGAAGCCATCACTTCCCTTGA 801 Query 934 AATATACAAGCGTGCGGGTCAGCAGGCTCGTAGCCTTTCTGATTTCTATGAAGCCTGCAA 993 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 802 GATATACAAGCGTGCGGGTCAGCAGGCTCGTAGCCTTTCTGATTTCTATGAAGCCTGCAA 861 Query 994 AGGATTGGAACTTGCAAGGAATTTTCAATTTCCTGTTCTAAGAGAGCCTCCACAATCTTT 1053 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 862 AGGATTGGAACTTGCTAGGAATTTTCAATTTCCTGTTCTAAGAGAGCCTCCACAATCTTT 921 Query 1054 TCTGACAACAATGGAGGAGTATATTAAAGAAGCACCGCGTGTTGTCGATGTCCCAGCGGA 1113 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 922 TCTGACAACAATGGAGGAGTATATTAAAGAAGCACCGCGGGTTGTCGATGTCCCAGCAGA 981 Query 1114 ACCACTGCTTCTAACATATAGGCCGGATGATGGACTGACTACCGAAGATACTGAACCGTC 1173 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 982 ACCACTGCTTCTAACATATAGGCCGGATGATGGACTGACTGCCGAAGATACTGAATCGTC 1041 Query 1174 GCATGAAGAACGTGAAATGTTACCTTCAGATGATGTCGTTGTTGTATCTGAAGAAACAGA 1233 || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1042 GCTTGAAGAACGTGAAATGTTACCTTCAGATGATGTCGTTGT---ACCTGAAGAAACAGA 1098 Query 1234 ACCTTCTCCCCCGCCTCCTCCTTCAGCCAACGCTCAGAACTTCATTGATACCGATGATCT 1293 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1099 ACCTTCTCCCCCGCTTCCTCCTTCAGCCAACGCTCAGAACTTCATTGACACCGATGATTT 1158 Query 1294 A-TGGGGTCTGAATACTGGTGCTCCTGATACATCAGTGATCGAAGACCAAAATGCACTTG 1352 | |||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 1159 ACTGGG-TCTGAACACTGGTGCTCCTGATGCATCAGTTATCGAAGACCAAAATGCACTTG 1217 Query 1353 CTTTAGCCATTGTTTCAACAGATGCTGATCCTCCAACTCCTCATTTTGGTCAACCAAATA 1412 ||||||||||| ||||||| |||||| ||||| |||| |||| |||||||||| ||||| Sbjct 1218 CTTTAGCCATTATTTCAACTGATGCTAATCCTTCAACGCCTCGTTTTGGTCAAGCAAATG 1277 Query 1413 ATTACGATCCTACAGGATGGGAGCTTGCCTTGGTGACAGCACCTAGCAGCGATATCTCTG 1472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1278 ATTACGATCCTACAGGATGGGAGCTTGCCTTGGTGACAGCACCTAGCAGCGATATCTCTG 1337 Query 1473 CATCCACTGAGAGAAAACTGGCTGGAGGGTTAGATACGCTTACACTTAGCAGTCTATACG 1532 ||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1338 CATCCACAGAGAGGAAATTGGCTGGAGGGTTAGATACGCTTACACTTAGCAGTCTATACG 1397 Query 1533 ATGATGGAGCCTACATAGCTTCCCAACGTCCTGTCTACGGTGCACCAGCTCCCAATCCAT 1592 ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| Sbjct 1398 ATGATGGAGCCTACATAGCTTCCCAGCGCCCTGTGTACGGTGCACCAGCTCCCAATCCAT 1457 Query 1593 TTGCGTCCCATGACCCGTTTGCATCGTCCAATGGCACAGCTCCCCCACCTCAGCAGCAAG 1652 |||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||| || Sbjct 1458 TTGCGTCCCATGACCCTTTTGCGTCGTCCAATGGTACAACTCCCCCACCTCAGCAGCCAG 1517 Query 1653 CGGTGAACAACCCATTCGGTGCTTACCAGCAGACATATCAGCATCAGCCCCAGCCAACGT 1712 |||| |||||||| ||| |||||||||||| |||||||||||||| | | | Sbjct 1518 CGGTCAACAACCCCTTCAGTGCTTACCAGCCGACATATCAGCATC--C----G------T 1565 Query 1713 ATCAGCATCAGTCCAACCCTCCCACTAATAATAGTAATCCATTTGGTGATTTTGGGGAAT 1772 | || | || | ||| || ||||||||||| |||||||||||||||||||||| Sbjct 1566 --C--CA--A--CC--C--TCCTACCAATAATAGTAACCCATTTGGTGATTTTGGGGAAT 1613 Query 1773 TCCCGGTTAACCCGGTTTCACAGCAGCCAAATACCTCCGGTTATGGTGATTTCTCGGTAA 1832 ||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||| Sbjct 1614 TCCCGGTGAACCCGGTTTCACAGCAGCCAAATACCACAGGTTATGGTGATTTCGCGGTAA 1673 Query 1833 ACCAACATAACAACCCGTTCCGTAGCACTGGCCTCATTTGATCATGTTGTCTATTCATGT 1892 |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| || Sbjct 1674 ACCAACATAACAACCCTTTCCGCAGCACTGGCCTCCTTTGATCATGTTGTCTATTCACGT 1733 Query 1893 TTG 1895 ||| Sbjct 1734 TTG 1736 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80027604745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5