BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02020.1 Length=1708 Score E Sequences producing significant alignments: (Bits) Value Ahg935936 jgi|Araly1|935936|scaffold_500127.1 2394 0.0 Ahg475124 jgi|Araly1|475124|fgenesh2_kg.2__254__AT1G62200.1 743 0.0 > Ahg935936 jgi|Araly1|935936|scaffold_500127.1 Length=1778 Score = 2394 bits (1296), Expect = 0.0 Identities = 1583/1715 (92%), Gaps = 45/1715 (3%) Strand=Plus/Plus Query 2 AGGAGAAAGT-AAAAAATGGCTTCCATTGATGAAGAAAGGTCACTTCTTGAAGTTGAAGA 60 |||||||||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct 6 AGGAGAAAGTAAAAAAATGGGTTCCATTGATGAAGAAAGGTCACTTC------TTGAAG- 58 Query 61 ATCTCTTATACAGGAAGAAGTAAAATTATATGCTGAAGATGGTTCAATAGATATTCATGG 120 | | |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 59 ------T-T----GAAGAAGTGAAATTGTATGCTGAAGATGGTTCAATAGATATTCATGG 107 Query 121 AAACCCACCATTGAAGCAGACAACAGGAAACTGGAAAGCTTGTCCATTCATTTTTGCAAA 180 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 108 AAATCCACCATTGAAGCAGACAACAGGAAACTGGAAAGCTTGTCCATTCATTTTTGCTAA 167 Query 181 CGAATGCTGCGAACGGTTGGCTTATTATGGAATTGCCAAGAATCTCATCACGTACTTCAC 240 ||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 168 CGAATGCTGTGAACGGTTGGCTTATTATGGTATTGCCAAGAATCTAATCACTTACTTCAC 227 Query 241 AAATGAATTGCATGAGACTAATGTTTCTGCTGCTAGACACGTCATGACATGGCAAGGAAC 300 |||||||||||||||||||||||||||||||||||||| || |||||||||||||| || Sbjct 228 CAATGAATTGCATGAGACTAATGTTTCTGCTGCTAGACATGTTATGACATGGCAAGGGAC 287 Query 301 ATGTTACATCACTCCTCTTATTGGAGCTTTAATAGCTGATGCTTACTGGGGAAGATATTG 360 |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 288 ATGTTATATCACTCCTCTTATTGGAGCTTTAATAGCTGATGCTTATTGGGGACGATATTG 347 Query 361 GACTATTGCTTGTTTCTCTGCCATTTATTTCACCGGAATGGTTGCATTGACACTCTCAGC 420 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 348 GACTATTGCTTGTTTCTCTGCCATTTATTTCACTGGAATGGTTGCATTGACACTATCAGC 407 Query 421 TTCAGTTCCGGGTCTT-AAGCCAGCGGAATGCATTGGCTCTCTATGTCCACCAGCAACAA 479 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 408 TTCAGTTCCGGGT-TTGAAGCCAGCGGAATGTATTGGCTCTCTATGTCCACCAGCAACAA 466 Query 480 TGGTTCAGTCTACGGTTTTATTTTCAGGGCTTTACCTTATCGCTCTTGGCACTGGAGGAA 539 ||||||||||||| |||||||||||||| ||||||||||| || ||||| ||||| |||| Sbjct 467 TGGTTCAGTCTACCGTTTTATTTTCAGGTCTTTACCTTATAGCACTTGGGACTGGTGGAA 526 Query 540 TCAAACCATGTGTCTCATCCTTTGGTGCTGATCAGTTTGATAAGACCGATCCAAGCGAAC 599 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 527 TCAAACCATGTGTTTCATCTTTTGGTGCTGATCAGTTTGATAAGACCGATCCAAGCGAAC 586 Query 600 GAGTCAGAAAAGCTTCTTTCTTTAACTGGTTTTACTTCACTATCAACATTGGTGCTTTTG 659 |||| ||||||||||| |||||||||||||||||||| || |||||||||||||| |||| Sbjct 587 GAGTGAGAAAAGCTTCGTTCTTTAACTGGTTTTACTTTACCATCAACATTGGTGCGTTTG 646 Query 660 TTTCATCTACTGTTCTAGTTTGGATTCAAGAGAATTATGGATGGGAATTAGGATTCTTGA 719 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 647 TTTCATCTACTGTTCTAGTTTGGATTCAAGAGAATTGTGGATGGGAATTAGGATTCTTGA 706 Query 720 TACCTACCGTGTTCATGGGACTTGCTACTATGAGTTTCTTCTTTGGCACGCCGCTTTATA 779 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 707 TACCTACCGTGTTCATGGGACTTGCTACTGTGAGTTTCTTCTTTGGCACGCCGCTTTATA 766 Query 780 GATTTCAGAAACCGAGAGGTAGCCCGATTACTAGCGTCTGCCAAGTTCTTGTAGCCGCAT 839 ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||| Sbjct 767 GATTTCAGAAACCGAGAGGGAGCCCCATTACTAGAGTCTGCCAAGTTCTTGTAGCTGCAT 826 Query 840 ACCGTAAATCGAATCTCAAGGTCCCTGAAGACT-C---------CAC--GGACG-A-AGG 885 |||| |||| | |||||||| |||||||||||| | ||| ||||| | ||| Sbjct 827 ACCGCAAATGGTATCTCAAGCTCCCTGAAGACTGCAAGATAGAGCACACGGACGGAGAGG 886 Query 886 AG-A-TGCAAACACTAACC----C-GTGGAAGCTATGTACCGTGACTCAAGTCGAAGAAG 938 | | | | ||| || || | ||||||||| ||||||||||||||||||||||||| Sbjct 887 CGGAATCCGAACCCTTTCCGGATCCGTGGAAGCTCTGTACCGTGACTCAAGTCGAAGAAG 946 Query 939 TTAAGATTCTGTTACGTTTGGTCCCCATTTGGGCCTCAGGAATCATCTTCTCAGTTCTCC 998 |||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| Sbjct 947 TTAAGATTCTGTTACGTTTGTTCCCCATTTGGGCCTCGGGCATCATCTTCTCAGTTCTCC 1006 Query 999 ATTCACAGATTTACACTCTCTTTGTTCAACAAGGACGGTGCATGAAACGAACCATCGGCT 1058 | |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 1007 ACTCACAGATTTACACGCTCTTTGTTCAACAAGGACGGTCCATGAAACGAACCATCGGCT 1066 Query 1059 TATTCGAAATCCCTCCCGCAACTCTCGGGATGTTCGACACTGCAAGTGTTCTCATATCTG 1118 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1067 CATTCGAAATCCCTCCAGCTACTCTCGGGATGTTCGACACTGCAAGTGTTCTCATATCTG 1126 Query 1119 TCCCAATCTATGACCGCGTCATCGTTCCCTTAGTGAGACGGTTCACAGGCTTAGCTAAAG 1178 ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1127 TCCCAATCTATGACCGCATCATCGTTCCCTTTGTGAGACGGTTCACAGGCTTAGCGAAAG 1186 Query 1179 GATTCACCGAGCTACAAAGAATGGGGATTGGTCTTTTTGTCTCTGTTTTGAGCTTGACAT 1238 ||||||| || |||||| ||||||||||||| || ||||||||||||||||||||||||| Sbjct 1187 GATTCACTGATCTACAACGAATGGGGATTGGACTCTTTGTCTCTGTTTTGAGCTTGACAT 1246 Query 1239 TTGCAGCTATCGTTGAGACGGTTCGGTTACAGTTAGCTAGAGATCTTGATCTAGTGGAAA 1298 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1247 TTGCAGCTATCGTTGAGACGGTTCGGTTACAGTTAGCCCGAGATCTTGATCTAGTGGAAA 1306 Query 1299 GTGGAGACATTGTTCCATTAAACATCTTTTGGCAAATCCCTCAGTACTTTTTAATGGGCA 1358 ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 1307 GTGGAGACACTGTTCCATTAACCATCTTTTGGCAAATCCCTCAGTACTTTTTTATGGGCA 1366 Query 1359 CTGCTGGAGTTTTCTTCTTTGTTGGGAGGATTGAGTTTTTCTATGAGCAATCTCCAGATT 1418 ||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||| Sbjct 1367 CTGCTGGAGTTTTCTTCTTCGTTGGTCGGATCGAGTTTTTCTATGAGCAGTCTCCAGATT 1426 Query 1419 CAATGAGAAGCTTGTGTAGTGCTTGGGCTCTTCTCACTACTACACTAGGAAACTACTTGA 1478 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1427 CAATGAGAAGCTTGTGTAGTGCTTGGGCTCTTCTCACTACCACACTAGGAAACTACTTGA 1486 Query 1479 GCTCGTTGATCATTACCCTTGTGGCGTATTTGAGCGGAAAAGATTGTTGGATTCCTTCAG 1538 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1487 GCTCGTTGATCATTACCCTTGTGGCGTATTTGAGCGGTAAAGATTGTTGGAT-CCTTCAG 1545 Query 1539 ACAACATTAACAATGGACATCTTGATTACTTCTTCTGGCTTTTGGTCAGTCTTGGATCTG 1598 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || Sbjct 1546 ACAACATTAACAATGGACATCTTGACTACTTCTTCTGGCTTTTGGTCTGTCTTGGATGTG 1605 Query 1599 TTAACATACCTGTTTTTGTCTTCTTCTCTGTGAAATATACTCATATGAAGGTTTGATCTC 1658 |||||||||| |||||||||||||||||||| ||||| ||||| | ||||| |||||||| Sbjct 1606 TTAACATACCCGTTTTTGTCTTCTTCTCTGTCAAATACACTCACAAGAAGGCTTGATCTC 1665 Query 1659 TTCTTCTGGCTCTTGTGTGTACTTTCAAAAT-TGt 1692 |||||||| |||||||||||||||||||||| ||| Sbjct 1666 TTCTTCTG-CTCTTGTGTGTACTTTCAAAATGTGT 1699 > Ahg475124 jgi|Araly1|475124|fgenesh2_kg.2__254__AT1G62200.1 Length=1839 Score = 743 bits (402), Expect = 0.0 Identities = 670/796 (84%), Gaps = 31/796 (4%) Strand=Plus/Plus Query 92 GCTGAAGATGGTTCAATAGATATTCATGGAAACCCACCATTGAAGCAGACAACAGGAAAC 151 |||||||||||||| | || ||| ||||||||||||||| |||| ||| ||| ||||| Sbjct 103 GCTGAAGATGGTTCTGTTGACATTTATGGAAACCCACCATCGAAGAAGAAAACTGGAAAT 162 Query 152 TGGAAAGCTTGTCCATTCATTTTTGCAAACGAATGCTGCGA-ACGGTTGGCTTATTATGG 210 |||||||||||||| || ||| ||| ||||||||| || || | | | ||||| ||||| Sbjct 163 TGGAAAGCTTGTCCCTTTATTCTTGGAAACGAATGTTGTGAGA-GACTAGCTTACTATGG 221 Query 211 AATTGCCAAGAATCTCATCACGTACTT-CACAAATGAATTGCATGAGACTAATGTTTCTG 269 ||||||||||||||| ||||| || || ||||| |||||| || ||| | |||||||||| Sbjct 222 AATTGCCAAGAATCTAATCACTTA-TTACACAAGTGAATTACACGAGTCCAATGTTTCTG 280 Query 270 CTGCTAGAC-ACGTCATGACATGGCAAGGAACATGTTACATCACTCCTCTTATTGGAGCT 328 | ||||| | ||||||||| ||||||||||| || || ||||| ||||| ||||||||| Sbjct 281 CAGCTAG-CGACGTCATGATTTGGCAAGGAACTTGCTATATCACACCTCTAATTGGAGCT 339 Query 329 -TTAATAGCTGATGCTTACTGGGGAAGATATTGGACTATTGCTTGTTTCTCTGCCATTTA 387 || ||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct 340 GTT-ATAGCTGATTCTTACTGGGGAAGATACTGGACTATTGCTTCTTTCTCTGCTATTTA 398 Query 388 TTTCACCGGAATGG--TTGCATTGACACTCTCAGCTTCAGTTCCGGGTCTT-AAGCCAGC 444 |||| ||||||| ||| ||||||||||| ||||||||||||||| || |||||||| Sbjct 399 TTTCTTTGGAATGGCTTTG--TTGACACTCTCGGCTTCAGTTCCGGGT-TTAAAGCCAGC 455 Query 445 GGAATGCATTGGC-----T-C---TCTATGTCCACCAGCAACAATGGTTCAGTCTACGGT 495 |||||| ||||| | | |||||| ||||||||||||| |||||||| | |||| Sbjct 456 GGAATGTGTTGGCTTTGTTGCGGTTCTATGCCCACCAGCAACAACGGTTCAGTATGCGGT 515 Query 496 TTTATTTTCAGGGCTTTACCTTATCGCTCTTGGCACTGGAGGAATCAAACCATGTGTCTC 555 ||| |||||||| ||||||||||| || ||||| |||||||| |||||||||||||| || Sbjct 516 TTTCTTTTCAGGACTTTACCTTATTGCACTTGGTACTGGAGGTATCAAACCATGTGTTTC 575 Query 556 ATCCTTTGGTGCTGATCAGTTTGATAAGACCGATCCAAGCGAACGAGTCAGAAAAGCTTC 615 ||| ||||||||||||||||||||| | || || || || |||||||| ||||||||||| Sbjct 576 ATCTTTTGGTGCTGATCAGTTTGATGATACTGACCCGAGGGAACGAGTTAGAAAAGCTTC 635 Query 616 TTTCTTTAACTGGTTTTACTTCACTATCAACATTGGTGCTTTTGTTTCATCTACTGTT-C 674 |||||||||||||||||||||| |||||||||||||| | ||||| ||||| ||| || | Sbjct 636 TTTCTTTAACTGGTTTTACTTCTCTATCAACATTGGTTCATTTGTCTCATCCACT-TTGC 694 Query 675 TAGTTTGGATTCAAGAGAAT-TATGGATGGGAATTAGGATTCTTGATACCTACCGTGTTC 733 |||||||| ||||||||||| | || |||| | | || |||||||| || |||||||| Sbjct 695 TAGTTTGGGTTCAAGAGAATGTCGGG-TGGGGACTCGGTTTCTTGATTCCCACCGTGTTT 753 Query 734 ATGGGA-CTTGCTA-CTATGAGTTTCTTCTTTGGCACGCCGCTTTATAGATTTCAGAAAC 791 |||||| | | ||| | |||||||||| |||| || ||||||||||| |||||||||| Sbjct 754 ATGGGAGCCT-CTATCGC-GAGTTTCTTCATTGGAACTCCGCTTTATAGGTTTCAGAAAC 811 Query 792 CGAGAGGTAGCCCGATTACTAGCGTCTGCCAAGTTCTTGTAGCCGCATACCGTAAATCGA 851 || ||||||||||||||||||| || ||||||||||||||||| |||||||| |||| | Sbjct 812 CGGGAGGTAGCCCGATTACTAGAGTTTGCCAAGTTCTTGTAGCTGCATACCGCAAATGGT 871 Query 852 ATCTCAAGGTCCCTGA 867 ||||||| ||||||| Sbjct 872 ATCTCAATCTCCCTGA 887 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64067792090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5