BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02130.1 Length=533 Score E Sequences producing significant alignments: (Bits) Value Ahg484136 jgi|Araly1|484136|fgenesh2_kg.5__128__AT2G02130.1 665 0.0 > Ahg484136 jgi|Araly1|484136|fgenesh2_kg.5__128__AT2G02130.1 Length=473 Score = 665 bits (360), Expect = 0.0 Identities = 442/479 (92%), Gaps = 16/479 (3%) Strand=Plus/Plus Query 37 CACTTCTTTCGAAATCTCTCTCTATCCCTCTCAAAAATGAAGCTCTCTGTGCGTTTTATC 96 ||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||| ||| Sbjct 2 CACTTCTTTTGAAATCTCTCTCTAT--CTCT-AAAAATGAAGCTCTCTATGCGTTTGATC 58 Query 97 TCCGCTGCTCTTC-TCTTGTTCATGGTATTCATTGCCACAGGGATGGGTCCAGTCACCGT 155 || |||| || || || |||||||||||||| | ||||| ||||||||||||||||| || Sbjct 59 TCGGCTGTTC-TCATCATGTTCATGGTATTCGTCGCCACTGGGATGGGTCCAGTCACTGT 117 Query 156 GGAGGCACGCACGTGTGAGTCAAAAAGCCATAGGTTCAAGGGTCCATGTGTGAGCACACA 215 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 118 GGAGGCACGCACGTGTGAGTCAAAGAGCCATAGGTTCAAGGGTCCATGCGTGAGCACACA 177 Query 216 CAACTGTGCAAACGTGTGCCACAACGAAGGCTTCGGCGGAGGTAAATGCCGTGGATTCCG 275 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 178 CAACTGTGCAAACGTGTGCCACAACGAAGGCTTTGGCGGAGGTAAATGCCGTGGATTCCG 237 Query 276 TCGTCGTTGCTACTGCACAAGACACTGCTGATCCATCCATTCTCATGACTCAAATCTTCG 335 |||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| | Sbjct 238 TCGTCGTTGCTACTGCACCAGACATTGCTGATCCATCCATTCTCATGACTCAA-TCTTTG 296 Query 336 ATCCATCGTCAGTGTGTTACTTCTTTCTTATCTAAATCTTCCGTACGGTACCATGTCGTA 395 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 297 ATCCATCGTC-GTGTGTTACTTCTTTCTTATCTAAATCTTCCGTACAGTACCATGTAGTA 355 Query 396 CCGTACATGAGTGTTTTC-TCGAATAAGTCATTGGT-TT--GTGTGTTTCCGGTTTTAAT 451 |||||||||||||| ||| || |||||||| ||||| || ||||||||||||||||||| Sbjct 356 CCGTACATGAGTGTGTTCCTC-AATAAGTCTTTGGTGTTTTGTGTGTTTCCGGTTTTAAT 414 Query 452 GTAATGTTAAATCAATTAATGGCTTT-TA--ATA-TATTGTATTATGGATCTCAATCTA 506 |||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||| Sbjct 415 GTAATGTTAAATCAATGAATGGCTTTGTATTATACTATTGTATTATGGATCTCAATCTA 473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19421194801 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5