BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02180.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484143 jgi|Araly1|484143|fgenesh2_kg.5__135__AT2G02180.1 1720 0.0
Ahg471628 jgi|Araly1|471628|fgenesh2_kg.1__1582__AT1G14530.2 953 0.0
Ahg337374 jgi|Araly1|337374|fgenesh1_pg.C_scaffold_1003939 647 0.0
> Ahg484143 jgi|Araly1|484143|fgenesh2_kg.5__135__AT2G02180.1
Length=1201
Score = 1720 bits (931), Expect = 0.0
Identities = 1075/1142 (94%), Gaps = 20/1142 (2%)
Strand=Plus/Plus
Query 54 AGAGAGTTC-TCATTATGTATATTCAAAATCTGAATCGAGAAGGAATCTGACTCG-TG-T 110
||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||| || |
Sbjct 16 AGAGAGTTCTTCATTATGTGTGTTCAAAATCTGAATCGAGAAGGAATCTGAATCGTTGTT 75
Query 111 AGATGAGAATCGGCGGCGTCGAGGTTACGAAATTTGCGTC-G-GA-GATG--AT-G---T 161
||||||||||||||||||| |||||| | ||||||||| | || |||| || | |
Sbjct 76 AGATGAGAATCGGCGGCGTAGAGGTTGTGCGATTTGCGTCGGAGATGATGTCATCGTCAT 135
Query 162 CG---TCG---TCGTCTTCGTCGGCGGTGGAGATGTTGAATCTCAAAGAAGCTTCGAATT 215
|| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 136 CGTCATCGTCTTCGTCTTCGTCGGCGGTGGAAATGTTGAATCTCAAGGAAGCTTCGAATT 195
Query 216 GGTGGTCAGACGTAAACGAATCTCCGATTTGGCAGGATCGTATCTTCCATGTTCTCGCTG 275
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GGTGGTCAGACGTAAACGAGTCTCCGATTTGGCAGGATCGTATCTTCCATGTTCTCGCTG 255
Query 276 TTCTCTACGGAATCGTTTCCCTCGTTGCTGTGATTCAACTTGTGAGAATACAATTGAGAG 335
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 256 TTCTCTACGGAATCGTTTCCGTCGTTGCTGTGATTCAACTTGTGAGAATACAATTGAGAG 315
Query 336 TTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATG 395
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TTCCTGAATATGGTTGGACTACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATG 375
Query 396 GAGTTCGTGCTGTGGTGTTTGTCTTCAGGCGAAATGTTCAGTTTATGCAACCAGAGATTC 455
|||||||||||||||||||||||||||| |||| || || |||||||| ||||||||||
Sbjct 376 GAGTTCGTGCTGTGGTGTTTGTCTTCAGAAGAAACGTGCAATTTATGCATCCAGAGATTC 435
Query 456 TGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGG 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGG 495
Query 516 TTCTTTTCTGGGCTGAAATTTATTATCAGGCGCGTGCAGTATCGACTGATGGACTCAGGC 575
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 496 TTCTCTTCTGGGCTGAAATTTACTATCAGGCGCGTGCAGTATCGACTGATGGACTGAGGC 555
Query 576 CAAGCTTCTTCACAATTAATGCAGTTGTATATGTAGTTCAGATTGCTCTATGGTTGGTTT 635
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 556 CAAGCTTCTTCACAATAAATGCAGTTGTATATGTAGTTCAGATTGCTCTTTGGTTGGTTT 615
Query 636 TGTGGTGGAAGCCTGTTCGAGTTATGGTAATCCTATCTAAGATGTTCTTTGCAGGTGTTT 695
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 616 TGTGGTGGAAGCCTGTTCGAATTATGATAATCCTATCTAAGATGTTCTTTGCAGGCGTTT 675
Query 696 CATTGTTCGCTGCCCTTGGATTTTTACTTTATGGTGGAAGGCTTTTCCTAATGTTGCAAC 755
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 676 CATTGTTCGCTGCGCTTGGATTTTTACTTTATGGTGGAAGGCTTTTCTTAATGTTGCAAC 735
Query 756 GGTTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGTTACGTGACAA 815
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GATTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGTTACGTGACAA 795
Query 816 CCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCTGCTTTCGATG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 796 CCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCTGCTTTTGATG 855
Query 876 AGGGGGCAAACCTTGATGTGTTAGATCACCCCATCCTTAACTTCATATATTACCTGTTGG 935
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 856 AGGGGGCAAACCTTGATGTGTTAGATCATCCCATCCTCAACTTCATATATTACCTGTTGG 915
Query 936 TAGAGATATTACCCTCCTCTCTGGTCCTCTTCATCTTGAGAAAGCTACCACCAAAACGAG 995
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 916 TAGAGATATTACCGTCCTCTCTGGTCCTGTTCATCTTGAGAAAGCTACCACCAAAACGAG 975
Query 996 GCATTACACAATACCATCAGATTCGCTGAAATGTAAAGGCACGACAACTAATGATCAGAT 1055
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 976 GCATTACACAATACCATCAGATTCGCTGAAATGTAAAGACACGACAACTAATGATCGGAT 1035
Query 1056 GAAGAAGACAAGACTATGGTTGTT-TATGCTTTTCTGTAATCAATAGAGAGAAAAGCATA 1114
|||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1036 GAAGAAGACAAGACCATGTTTGTTATATGCTTTTCTGTATTCAATAGAGAGAAAAGCGTA 1095
Query 1115 AGATGGAAATGAAATAGATCTAAAGCTGATAAGGCCTTTTGGTTGATGATGGGAATGGAT 1174
|||| ||||||| |||||||||||||| |||| | ||||||||||||||||||||| ||
Sbjct 1096 AGATACAAATGAA-TAGATCTAAAGCTGGTAAGTCTTTTTGGTTGATGATGGGAATGAAT 1154
Query 1175 TC 1176
||
Sbjct 1155 TC 1156
> Ahg471628 jgi|Araly1|471628|fgenesh2_kg.1__1582__AT1G14530.2
Length=1194
Score = 953 bits (516), Expect = 0.0
Identities = 739/847 (87%), Gaps = 13/847 (2%)
Strand=Plus/Plus
Query 190 GTTGAATCTCAAAGAAGCTTCGAATTGGTGGTCAGACGTAAACGAATCTCCGATTTGGCA 249
||| ||| | || || ||| ||||||||||||| || || || ||||||||| | |||||
Sbjct 159 GTTTAATTTGAAGGAGGCTACGAATTGGTGGTCGGATGTGAATGAATCTCCGGTGTGGCA 218
Query 250 GGATCGTATCTTCCATGTTCTCGCTGTTCTCTACGGAATCGTTTCCCTCGTTGCTGTGAT 309
||||||||||||||||||||| |||||||| || |||||||||||| || ||||||||||
Sbjct 219 GGATCGTATCTTCCATGTTCTTGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGAT 278
Query 310 TCAACTT-GTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCT 368
|||| || || |||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 279 TCAA-TTGGTAAGAATACAATTGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCT 337
Query 369 TTCACTTTCTCAATTTCGTT-GTTAATGGAGTTCGTGCTGTGGTGTTTGTCTTCAGGCGA 427
|||| |||||||||||| || || ||||||||||| ||| |||| ||||| ||| | |||
Sbjct 338 TTCATTTTCTCAATTTC-TTGGTGAATGGAGTTCGAGCTCTGGTTTTTGTTTTCCGTCGA 396
Query 428 AATGTTCAGTTTATGCAA-CCAGAGATTCTGCAACATATCTTGCTTGATATTCCAAGTCT 486
|||| ||| |||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 397 GATGTACAGAATATG-AAGCCAGAGATTCTGCAACATATCTTACTTGACATTCCAAGTCT 455
Query 487 TGCTTTCTTCACCACCTATGCTCTTCTGGTTCT-TTTCTGGGCTGAAATTTATTATCAGG 545
|||||||||||| || ||||| ||||| ||||| ||| ||||| || ||||| || ||||
Sbjct 456 TGCTTTCTTCACTACATATGCGCTTCTTGTTCTCTTT-TGGGCAGAGATTTACTACCAGG 514
Query 546 CGCGTGCAGTATCGACTGATGGACTCAGGCCAAGCTTCTTCACAATTAATGCAGTTGTAT 605
| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 515 CACGTGCTGTATCCACTGATGGACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTTT 574
Query 606 ATGTAGTTCAGATTGCTCTATGGTTGGTTTTGTGGTGGAAGCCTGTTCGA-GTTATGGTA 664
| ||| ||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct 575 ACGTAATTCAGATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGTTC-ACCTTATGGTA 633
Query 665 ATCCTATCTAAGATGTTCTTTGCAGGTGTTTCATTGTTCGCTGCCCTTGGATTTTTACTT 724
||| | |||| |||||||||||||||||| ||||||||||| |||||||| |||||| ||
Sbjct 634 ATCATTTCTAGGATGTTCTTTGCAGGTGTCTCATTGTTCGCGGCCCTTGGCTTTTTA-TT 692
Query 725 -TATGGTGGAAGGCTTTTCCTAATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGGCG 783
||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 693 ATATGGAGGAAGGCTTTTCCTGATGCTGCAACGATTTCCAGTAGAATCTAAAGGGCGGCG 752
Query 784 CAAAAAGCTGCAAGAGGTTGGTTACGTGACAACCATATGCTTTACGTGTTTCCTCATCAG 843
||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 753 CAAGAAGCTGCAAGAGGTTGGCTACGTGACATCCATATGCTTTACATGTTTCCTCATCAG 812
Query 844 ATGTATCATGATGTGCTTTGCTGCTTTCGATGAGGGGGCAAACCTTGATGTGTTAGATCA 903
||| |||||||||||||||| ||| |||||||| | ||| | |||||||| |||||||
Sbjct 813 ATGCATCATGATGTGCTTTGATGCGTTCGATGATGCAGCAGATCTTGATGTCCTAGATCA 872
Query 904 CCCCATCCTTAACTTCATATATTACCTGTTGGTAGAGATATTACCCTCCTCTCTGGTCCT 963
|| ||||| ||||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct 873 TCCAATCCTAAACTTCATATATTACCTGTTGGTGGAGATATTGCCTTCGTCTCTGGTCCT 932
Query 964 CTTCATCTTGAGAAAGCTACCACCAAAACGAGGCATTACACAATACCATCAGATTCGCTG 1023
||| ||| | |||||||| ||||||||||| || || |||||||||||||| || | ||
Sbjct 933 CTTTATCCTAAGAAAGCTTCCACCAAAACGCGGAATCACACAATACCATCAAATCCAATG 992
Query 1024 AA-ATGT 1029
|| ||||
Sbjct 993 AACATGT 999
> Ahg337374 jgi|Araly1|337374|fgenesh1_pg.C_scaffold_1003939
Length=564
Score = 647 bits (350), Expect = 0.0
Identities = 495/562 (88%), Gaps = 21/562 (4%)
Strand=Plus/Plus
Query 456 TGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGG 515
||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 2 TGCAACATATCTTGCTTGATATTCCAAGTCTTGGTTTCTTCACAACCTATGCTGTTCTGA 61
Query 516 TTCTTTTCTGGGC--TGAAATTTATTATCAGGCGCGTGC-AGTATCGACTGATGGACTCA 572
|||| |||||||| ||| || | |||||||||||||| | |||| || |||||||| |
Sbjct 62 TTCTCTTCTGGGCAATGA--TTCACTATCAGGCGCGTGCGA-TATCCACCGATGGACTAA 118
Query 573 GGCCAAGCTTCTTCACAATTAATGCAGTTGTATATGTAGTTCAGAT-TGCTCTATGGTTG 631
||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||
Sbjct 119 AGCCAAGCTTCTTCACAATTAATGCAATTGTATATGTAGTTCAGATAT-CTCTTTGGTTG 177
Query 632 GTTTTGTGGTGGAAGCCTGTTCGAGTTATGGTAATCCTAT-C-TA---A-GATGTTCTTT 685
|||||||||||||| ||| ||||||||||||||||||||| | || | |||||||||
Sbjct 178 GTTTTGTGGTGGAACCCTATTCGAGTTATGGTAATCCTATTCCTATCTAAGATGTTCTTA 237
Query 686 GCAGGTGTTTCATTGTTCG-CTGCCCTTGGATTTTTACTTTATGGTGGAAGGCTTTTCCT 744
||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||
Sbjct 238 GCAGGTGTTTCATTGTTCGTC-GCCCTTGGATTTTTACTTTACGGTGGAAGGCTTTTGCT 296
Query 745 AATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGG 804
||||||||| || ||||||||||||||||||||||| | |||||| || ||||||||||
Sbjct 297 AATGTTGCATCGCTTTCCAGTAGAATCTAAAGGGCGTAGAAAAAAGATGAAAGAGGTTGG 356
Query 805 TTACGTGACAACCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGC 864
|| |||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 357 TTGTGTGACAACAATATGCTTTACGGGTTTCCTCATCCGATGTATCATGATGTGCTTTGC 416
Query 865 TGCTTTCGATGAGGGGGCAAACCTTGATGTGTTAGATCACCCCATCCTTAA-CTTCATAT 923
||||||| | ||||| ||||||||||||||| | ||||| ||||||||||| || |||||
Sbjct 417 TGCTTTCTACGAGGGCGCAAACCTTGATGTGATGGATCATCCCATCCTTAATCT-CATAT 475
Query 924 ATTACCTGTTGGTAGAGATATTACCCTCCTCTCTGGTCCTCTTCATCTTGAGAAAGCTAC 983
||||| |||||||||||||||| || | ||||| || || ||||||||||||| ||||
Sbjct 476 ATTACTTGTTGGTAGAGATATTGCCGTTTTCTCTCGTTCTGTTCATCTTGAGAACCCTAC 535
Query 984 CACCAAAACGAGGCAT-TACAC 1004
||||||||||| ||| |||||
Sbjct 536 CACCAAAACGA--CATGTACAC 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5