BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02390.3 Length=962 Score E Sequences producing significant alignments: (Bits) Value Ahg896178 jgi|Araly1|896178|Al_scaffold_0005_144 1099 0.0 Ahg935980 jgi|Araly1|935980|scaffold_500171.1 712 0.0 > Ahg896178 jgi|Araly1|896178|Al_scaffold_0005_144 Length=684 Score = 1099 bits (595), Expect = 0.0 Identities = 657/687 (96%), Gaps = 3/687 (0%) Strand=Plus/Plus Query 117 ATGGCGAATTCCGGCGAAGAGAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCT 176 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGAATTCCGGCGCTGAGAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCT 60 Query 177 CATCGTGTCCGTATCGCCCTCGCTTTGAAAGGGCTTGATTATGAGTATATACCAGTGAAT 236 ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 61 CATCGTGTCCGCATCGCCCTCGCTTTAAAAGGTCTTGATTATGAGTATATACCAGTGAAT 120 Query 237 TTGCTCAAGGGTGATCAATTCGATTCAGTTTATCGTTTTGATCTTCAAGATTTCAAGAAG 296 ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 121 TTGATCAAGGGTGATCAATTCGATCCAGTTTATCGTTTTGATCTTCAAGATTTCAAGCAG 180 Query 297 ATCAATCCAATGGGAACTGTACCAGCTCTGGTGGATGGAGATGTTGTGATTAATGATTCT 356 |||||||||||||| ||||||||||| || || ||||| ||||| ||||||||||||||| Sbjct 181 ATCAATCCAATGGGTACTGTACCAGCGCTTGTTGATGGCGATGTCGTGATTAATGATTCT 240 Query 357 TTTGCGATAATAATGTATCTGGATGAGAAGTACCCTGAGCCACCTTTGTTACCTCGTGAC 416 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 241 TTTGCGATAATAATGTATCTGGATGAGAAGTATCCTGAGCCACCTCTGTTACCTCGTGAC 300 Query 417 CTCCATAAACGAGCTGTGAATTACCAGGCAATGAGTATTGTCTTGTCTGGCATACAGCCT 476 |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 301 ATCCATAAACGGGCTGTGAATTACCAGGCGATGAGTATTGTCTTGTCTGGCATACAACCT 360 Query 477 CATCAAAATCTGGCTGTTATTAGGTATATCGAGGAAAAGATAAATGTGGAGGAGAAGACT 536 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 361 CATCAAAATCTGGCTGTTATTAGGTATATCGAGGAAAAGATAAATGCGGAGGAGAAGACT 420 Query 537 GCCTGGGTTAATAATGCTATCACAAAAGGATTTACAGCTCTCGAGAAACTGTTGGTGAAT 596 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GCTTGGGTTAATAATGCTATCACAAAAGGATTTACAGCTCTCGAGAAACTGTTGGTGAAT 480 Query 597 TGCGCTGGGAAACATGCGACTGGTGATGAAATTTACCTGGCTGATCTCTTTCTAGCACCA 656 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGCGCTGGGAAACATGCAACTGGTGATGAAATTTACCTGGCTGATCTCTTTCTAGCACCA 540 Query 657 CAGATCCACGGAGCAATCAACAGATTCCAGATTAACATGGAACCGTACCCAACTCTTGCA 716 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 541 CAGATCCACGGAGCAATCAACAGATTCCAGATTAACATGGAACCATACCCAACTCTTGCA 600 Query 717 AAATGTTACGAATCATACAACGAACTGCCTGCGTTTCAAAATGCACTACCGGAAAAGCAG 776 |||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 601 AAATGTTATGAATCATACAACGAACTGCCTTCGTTTCAAAATGCACTCCCGGAAAAGCAG 660 Query 777 CCAGATGCTCCTTCTTCCACCATCTGA 803 |||||||||||||| | ||||||||| Sbjct 661 CCAGATGCTCCTTC--C-ACCATCTGA 684 > Ahg935980 jgi|Araly1|935980|scaffold_500171.1 Length=688 Score = 712 bits (385), Expect = 0.0 Identities = 592/688 (86%), Gaps = 29/688 (4%) Strand=Plus/Plus Query 137 GAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCTCATCGTGTCCGTATCGCCCT 196 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 26 GAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCTCATCGCGTCCGTATCGCCCT 85 Query 197 CGCTTTGAAAGGGCTTGATTATGAGTATATACCAGTGAATTTGCTC-AAGGGTGATCAAT 255 | |||| ||||| ||||||||||| ||||||||||||| ||||||| ||||| | | Sbjct 86 CACTTTAAAAGGACTTGATTATGAATATATACCAGTGATTTTGCTCAAAGGG-G----A- 139 Query 256 TCGATTCAGTTTATCGTTTTGATCTTCAAGATTTCAAGAAGATCAATCCAATGGGAACTG 315 || | | | || |||| | |||||||||| |||||||||||||||| |||| Sbjct 140 TC-A---A---T-TC-----GATC--C-AGATTTCAAGCAGATCAATCCAATGGGCACTG 183 Query 316 TACCAGCTCTGGTGGATGGAGATGTTGTGATTAATGATTCTTTTGCGATAATAATGTATC 375 ||||||| || || ||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct 184 TACCAGCGCTTGTTGATGGTGATGTTGTGATTAATGATTCTTTCGCAATAATAATGTATC 243 Query 376 TGGATGAGAAGTACCCTGAGCCACCTTTGTTACCTCGTGACCTCCATAAACGAGCTGTGA 435 ||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||| || | Sbjct 244 TGGATGATAAGTATCCTGAGCCACCGCTGTTACCAAGTGACCTCCATAAACGAGCGGTAA 303 Query 436 ATTACCAGGCAATGAGTATTGTCTTGTCTGGCATACAGCCTCATCAAAATCTGGCTGTTA 495 |||||||||| | |||||||||| ||| ||| ||||| |||||||||||| |||| || Sbjct 304 ATTACCAGGCGACGAGTATTGTCATGTGTGGTATACAACCTCATCAAAATATGGCACTTT 363 Query 496 TTAGGTATATCGAGGAAAAGATAAATGTGGAGGAGAAGACTGCCTGGGTTAATAATGCTA 555 |||||||| |||||||||||||||||| |||||||| ||||| ||| ||| || |||| Sbjct 364 TTAGGTATCTCGAGGAAAAGATAAATGCCGAGGAGAAAACTGCTTGGATTACCAACGCTA 423 Query 556 TCACAAAAGGATTTACAGCTCTCGAGAAACTGTTGGTGAATTGCGCTGGGAAACATGCGA 615 ||||||||||||| |||||||||||||| |||||||||| ||||||||| ||| | |||| Sbjct 424 TCACAAAAGGATTCACAGCTCTCGAGAATCTGTTGGTGAGTTGCGCTGGAAAATACGCGA 483 Query 616 CTGGTGATGAAATTTACCTGGCTGATCTCTTTCTAGCACCACAGATCCACGGAGCAATCA 675 ||||||||||| ||||| |||| ||||| |||||||||||||||||||||| |||| ||| Sbjct 484 CTGGTGATGAAGTTTACTTGGCCGATCTTTTTCTAGCACCACAGATCCACGCAGCATTCA 543 Query 676 ACAGATTCCAGATTAACATGGAACCGTACCCAACTCTTGCAAAATGTT-ACGAATCATAC 734 ||||||||||||||||||||||||| ||||| ||||||||||| | || |||| |||||| Sbjct 544 ACAGATTCCAGATTAACATGGAACCATACCCGACTCTTGCAAAGT-TTCACGAGTCATAC 602 Query 735 AACGAACTGCCTGCGTTTCAAAATGCACTACCGGAAAAGCAGCCAGATGCTCCTTCTTCC 794 |||||||||||||| |||||||||||| | || || || ||||||||| ||||||| Sbjct 603 AACGAACTGCCTGCATTTCAAAATGCAGTCCCAGAGAACCAGCCAGATACTCCTTCG--- 659 Query 795 ACCATCTGATTCTGTGAACCCATAAGCT 822 |||||||||||||| ||||| |||||| Sbjct 660 ACCATCTGATTCTGCGAACCG-TAAGCT 686 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35721173229 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5