BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02410.1
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484159 jgi|Araly1|484159|fgenesh2_kg.5__151__AT2G02410.1 1626 0.0
> Ahg484159 jgi|Araly1|484159|fgenesh2_kg.5__151__AT2G02410.1
Length=1169
Score = 1626 bits (880), Expect = 0.0
Identities = 975/1018 (96%), Gaps = 17/1018 (2%)
Strand=Plus/Plus
Query 1 ATGATATTATCCACTAGTTTTATAGACTTTTCaaaaaaaGGAGAGAA--TTTTCAATTCT 58
|||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||
Sbjct 1 ATGATATTATCCACTAGTTTTATAGACTTTTC-AAAAAAGAAGA-AATGTTTTCAATTCT 58
Query 59 TCAGTAGTCAAATAGATGAAGACCGCCGGAGCGCCGCCGCAGAGAGGTGGTTCCTCTTCC 118
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 59 TCAGTAGTCAAATAGATGAAAACCGCCGGAGCGCCGCCGCATAGAGGTGG------TTCC 112
Query 119 TCCTCCGCCGTATACTTTAACTGGTCTTCATCATCTTGTTCTTACGATAGCTGTAGAGTT 178
||| ||| | | |||||| ||||||||||||||||||| || | |||||| |||||||||
Sbjct 113 TCCGCCG-C-T-TACTTTTACTGGTCTTCATCATCTTGCTCCTCCGATAGTTGTAGAGTT 169
Query 179 TTGGTGGTGAAGATGGGAGGAAAAAGCAAGAAGCCTCATCAATCTTCTTCTTTTAAGG-- 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 TTGGTGGTGAAGATGGGAGGAAAAAGCAAGAAGCCTCATCAATCTTCTTCTTTTAAGGTC 229
Query 237 -AGTCAGAGCCAGAACCACCGAGAATCAAATCCAATGTTAAGCATAACTTGCAGCTTCTC 295
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 230 CATTCAGAGCCAGAACCACCGAGAATCAAATCCAATGTTAAGCACAACTTGCAGCTTCTG 289
Query 296 AAGTTATGGAAGGAGTTTCAGAGCAGAGGATCTGGCATGGCTAAGCCAGCGACTAGTTAC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 AAGTTATGGAAGGAGTTTCAGAGCAGAGGATCTGGCATGGCTAAGCCAGCGACTAGTTAC 349
Query 356 AGGAAGAAGAAAGTAGAGAAAGACGAGTTACCGGATGATAGCGAGCTCTACCGGGATCCT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 AGGAAGAAGAAAGTAGAGAAAGACGAGTTACCGGATGATAGCGAGCTCTACCGGGATCCT 409
Query 416 ACAAATACGCTTTACTACACGAACCAAGGTCTATTGGATGACGCAGTTCCGGTTTTGCTT 475
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 410 ACAAATACGCTTTACTACACGAACCAAGGTCTATTGGATGATGCAGTTCCGGTTTTGCTT 469
Query 476 GTTGATGGTTATAATGTGTGTGGATATTGGATGAAGTTAAAGAAACATTTCATGAAAGGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GTTGATGGTTATAATGTGTGTGGATATTGGATGAAGTTAAAGAAACATTTCATGAAAGGA 529
Query 536 AGGCTTGACGTTGCTCGGCAGAAGTTAGTTGATGAACTTGTGTCCTTCAGTATGGTTAAA 595
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AGGCTTGATGTTGCTCGGCAGAAGTTAGTTGATGAACTTGTGTCCTTCAGTATGGTTAAA 589
Query 596 GAGGTTAAGGTAGTGGTTGTGTTTGATGCTCTCATGTCTGGTCTTCCTACTCACAAGGAA 655
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 590 GAGGTTAAGGTAGTGGTTGTGTTTGATGCTCTCATGTCTGGTCTCCCTACTCACAAGGAA 649
Query 656 GACTTTGCAGGTGTTGATGTGATTTTCTCAGGAGAAACTTGTGCTGACGCTTGGATTGAA 715
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 650 GATTTTGCAGGTGTTGATGTGATTTTCTCAGGAGAAACTTGCGCTGACGCTTGGATTGAA 709
Query 716 AAGGAGGTGGTTGCATTGAGAGAAGATGGATGCCCCAAGGTTTGGGTTGTAACATCTGAT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AAGGAGGTGGTTGCATTGAGAGAAGATGGATGCCCCAAGGTTTGGGTTGTAACATCTGAT 769
Query 776 GTCTGTCAACAACAAGCAGCACATGGAGCGGGAGCTTATATTTGGAGTAGCAAGGCATTG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 770 GTCTGTCAACAACAAGCAGCACATGGAGCGGGAGCTTATATTTGGAGTAGCAAGGCACTG 829
Query 836 GTTTCTGAGATTAAATCGATGCATAAGGAGGTTGAGAAAATGATGCAAGAAACAAGGTCA 895
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 830 GTTTCTGAGATCAAATCAATGCATAAGGAGGTTGAGAGAATGATGCAAGAAACAAGGTCA 889
Query 896 ACATCTTTCCAAGGGAGATTGCTTAAACACAATCTTGATTCTGAAGTCGTTGATGCTCTT 955
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 890 ACATCTTTCCAAGGGAGATTGCTGAAACACAATCTTGATTCTGAAGTCGTGGATGCTCTT 949
Query 956 AAAGATCTTAGAGACAAATTATCAGAAAACGAAACAAAGAGATGACAAAAAG-ACCAA 1012
|||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 950 AAAGATCTAAGAGACAAATTATCAGAAAACGAGACAAAGAGATGACAACAAGGACCAA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5