BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02540.1 Length=1205 Score E Sequences producing significant alignments: (Bits) Value Ahg484166 jgi|Araly1|484166|fgenesh2_kg.5__158__AT2G02540.1 1474 0.0 Ahg920334 jgi|Araly1|920334|scaffold_101615.1 302 5e-81 > Ahg484166 jgi|Araly1|484166|fgenesh2_kg.5__158__AT2G02540.1 Length=1081 Score = 1474 bits (798), Expect = 0.0 Identities = 958/1031 (93%), Gaps = 27/1031 (3%) Strand=Plus/Plus Query 128 TTATTCTCAAGAAAGGTTTCATTTTGAGATAAAGTTTGCTGCTCTTTCTGGTTG-TGGAT 186 |||||||||||||| |||||||||| ||||||||||||||||| |||||||||| | ||| Sbjct 4 TTATTCTCAAGAAAAGTTTCATTTTAAGATAAAGTTTGCTGCTTTTTCTGGTTGTTAGAT 63 Query 187 AGATCAAAAGAATGGAGATTGCAAGTCAAGAAGATCCTATTCCAATAAACACTAGTTATG 246 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 64 AGATCAAGAGAATGGAGATTGCAAGTCAAGATGATCCTATTCCAATAAACACTAGTTACG 123 Query 247 GTAATAGTGGAGGTGGGCATGGGAACATG----A--A-C--CATCATCATCATGCCAATT 297 |||||||||| |||||||||||||||||| | | | ||||||||||||||||||| Sbjct 124 GTAATAGTGGTGGTGGGCATGGGAACATGATCCATCATCTTCATCATCATCATGCCAATT 183 Query 298 CTGCACCATCATCTCTCAACATTACTACTTCAAACCCACTACTAGTCTCCTCAAATAGTA 357 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 184 CTGCACCATCATCTCTCAACATGACTACTTCAAACCCACTACTAGTCTCCTCAAATGGTA 243 Query 358 ATGGTCTTGGTAAAAATCATGATCATTCTCATCATCATCATGTGGGTTACAACATCATGG 417 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 244 ATGGTCTTGGCAAAAATCATGAACATTCTCATCATCATCATGTGGGTTACAACATCATGG 303 Query 418 T----TAC--CAACATCAAGAAAGAGAAGCCTGTGGTGATAAAGTACAAGGAATGCCTAA 471 | || |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 304 TCAGCAACAACAACATCAAGAAAGAGAAGCCTGTGGTGATCAAGTACAAGGAATGCCTAA 363 Query 472 AGAACCATGCAGCTACCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTATGCCAA 531 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 AGAATCATGCAGCTACCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTATGCCAA 423 Query 532 GTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGCTCAGTTTGCAACTGCCATAGAAACT 591 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 424 GTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGTTCAGCTTGCAACTGCCATAGAAACT 483 Query 592 TTCATAGAAGAGAAACCGAAGGTGAAGAGAAAACATTCTTTTCCCCTTACCTCAACCACC 651 | ||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 484 TCCATAGAAGAGAAATTGAAGGTGAACAAAAAACCTTCTTTTCCCCTTACCTCAACCACC 543 Query 652 ACCAACCACCTCCGCAGCAGAGAAAACTCATGTTCCACCACAAGATGATCAAATCACCAT 711 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 ACCAACTACCTCCGCCGCAGAGAAAACTCATGTTCCACCACAAGATGATCAAATCACCAT 603 Query 712 TACCACAACAAATGATAATGCCTA-TTGGCGTTACAACCGCTGGATCCAACTCAGAGTCA 770 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 604 TACCACAACAAATGATAATGCC-AGTTGGCGTTACAACCGCTGGATCCAACTCAGAGTCA 662 Query 771 GAGGATCTTATGGAGGAAGAAGGCGGAGGAAGCTTGACATTCCGGCAGCCACCACCACCA 830 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 663 GAGGATCTTATGGAGGAAGAGGGCGGAGGAAGCTTGACATTCCGGCAACCACCACCACCA 722 Query 831 CCATCACCGTATAGTTACGGACATAATCAGAAGAAAAGGTTTAGGACAAAGTTTACACAA 890 ||| || |||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 723 CCACCATCGTATAGTTACGGACATAATCAGAAGAAGAGGTTTAGGACAAAGTTTACTCAA 782 Query 891 GAGCAAAAGGAGAAGATGATTAGTTTTGCGGAAAGAGTTGGTTGGAAGATTCAGAGACAA 950 ||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||| Sbjct 783 GAGCAAAAGGAAAAGATGATGAGTTTTGCGGAGAGAGTTAGTTGGAAGATTCAGAGACAA 842 Query 951 GAGGAATCTGTTGTTCAACAGCTTTGTCAAGAGATTGGAATTAGGAGAAGAGTTCTTAAA 1010 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 843 GAGGAATCTGTTGTTCAACAGCTTTGTCAAGAGATCGGAATTAGGAGAAGAGTTCTTAAA 902 Query 1011 GTTTGGATGCACAACAACAAACAAAATCTCTCCAAGAAGAGCAACAAC------GTTAGT 1064 ||||||||||||||||||||||| ||||| |||||||||||||||||| |||| | Sbjct 903 GTTTGGATGCACAACAACAAACACAATCTATCCAAGAAGAGCAACAACAACAACGTTAAT 962 Query 1065 AACAATGTCGACCTTTCTGCTGGTAATAACGACA-T--TACTGAAAATCTTGCTTCTACT 1121 |||||||| || ||||||||||||||||| || | |||||||||| ||||||||| | Sbjct 963 AACAATGTTGAGCTTTCTGCTGGTAATAATAACGCTACTACTGAAAATTTTGCTTCTATT 1022 Query 1122 AATCCTTAGTT 1132 ||||||||||| Sbjct 1023 AATCCTTAGTT 1033 > Ahg920334 jgi|Araly1|920334|scaffold_101615.1 Length=991 Score = 302 bits (163), Expect = 5e-81 Identities = 481/626 (77%), Gaps = 55/626 (9%) Strand=Plus/Plus Query 448 TGATAAAGTACAAGGAATGCCTAAAGAACCATGCAGCTA-CCATGGGAGGCAATGCCATT 506 |||||||||||||||| || || |||||||||||||| | | |||||||||||||||| | Sbjct 292 TGATAAAGTACAAGGAGTGTCTCAAGAACCATGCAGC-AGCTATGGGAGGCAATGCCACT 350 Query 507 GATGGTTGTGGAGAGTTTATGCCAAGTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGC 566 ||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct 351 GATGGGTGTGGAGAGTTTATGCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGC 410 Query 567 TCAGTTTGCAACTGCCATAGAAACTTTCATAGAAGAGAAACCGAAGGTGAAGAGAAAACA 626 |||| |||||| ||||| |||||||| ||||||| |||| ||||| ||| | | | Sbjct 411 TCAGCTTGCAATTGCCACAGAAACTTCCATAGAAAAGAAGTGGAAGGCGAACCGGCAGC- 469 Query 627 TTCTTTTCCCCTTACCTCAACCACCACCAACCACCTCCGCAGCAGAGAAAACTCATGTTC 686 | | || || || | |||||||||| ||||| || | || ||| |||||| || Sbjct 470 TACCG--CCATTTCCC-CTT--ACCACCAACCGCCTCCACACC-GA-AAA-CTCATGCTC 521 Query 687 CACCACAAGATGATCAAATCA-CCATTACCACAACAAATGATAATGCCTATTGGCGT-T- 743 ||||| | | ||||| ||| |||| ||||| |||||||| ||||| ||||| || | Sbjct 522 AACCACCACAAGATCAGGTCAGCCATG-CCACACCAAATGATCATGCCCATTGGAGTCTC 580 Query 744 -A-CAACCG---C-TGGATC-CAACTCAGAGTCAGAGGATCTT-ATGGAGGAAGAAGGCG 795 | | |||| | || || |||||| ||||| ||||| ||| ||||||||||| |||| Sbjct 581 TAACTACCGGTACATGCATAACAACTCCGAGTCCGAGGA-CTTTATGGAGGAAGATGGCG 639 Query 796 GAGGAAGCTTGACATTCCGGCAGCCACCACCACCACCATCACCGTATAGTTACGGACATA 855 | | | || ||| |||| | | | | |||| ||| | | | ||| | Sbjct 640 TA--A--C----CA--CCG-CAGCTAG-ATCGCTACCAA-ACC-T---GCCAT--ACA-A 679 Query 856 ATCAGAAGAAAAGGTTTAGGACAAAGTTTACACAAGAGCAAAAGGAGAAGATGATTAGTT 915 |||||||| ||||||||||||||||| || | || ||||||||||||||| | |||| Sbjct 680 C-CAGAAGAAGAGGTTTAGGACAAAGTTCACGCCGGAACAAAAGGAGAAGATGCTGAGTT 738 Query 916 TTGCGGA-AAGAGTTGGTTGGAAGATTCAGAGACAAGAGGAATCTGTTGTTCAACAGCTT 974 |||| || || |||||| ||||| || || || ||||| || | |||||||||| || || Sbjct 739 TTGCTGAGAA-AGTTGGATGGAAAATACAAAGGCAAGAAGATTGTGTTGTTCAA-AGGTT 796 Query 975 T-GTCAAG-AGATTGGAATTAGGAGAAGAGTTCTTAAAGTTTGGATGCACAACAACAA-A 1031 | | | || |||||||| | | ||||||||| ||||| |||||||||||||||||||| | Sbjct 797 TTG-CGAGGAGATTGGAGTGAAGAGAAGAGTCCTTAAGGTTTGGATGCACAACAACAAGA 855 Query 1032 -CAAAATCTCTCCAAGAAGAGCAACA 1056 | | | |||||||||||| ||||| Sbjct 856 TCCAT-T-TCTCCAAGAAGAACAACA 879 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44985042060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5