BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02710.1 Length=1582 Score E Sequences producing significant alignments: (Bits) Value Ahg484176 jgi|Araly1|484176|fgenesh2_kg.5__168__AT2G02710.2 1818 0.0 > Ahg484176 jgi|Araly1|484176|fgenesh2_kg.5__168__AT2G02710.2 Length=1622 Score = 1818 bits (984), Expect = 0.0 Identities = 1322/1474 (90%), Gaps = 68/1474 (5%) Strand=Plus/Plus Query 79 CtttttttCAATGAAAACATTTTCTTGATTCCTGATTTCAAATTTCACA-ATCTGGATTT 137 ||||||| | |||||||||||||||||||||| ||||||||||||| || | |||| ||| Sbjct 198 CTTTTTTCCCATGAAAACATTTTCTTGATTCCCGATTTCAAATTTC-CATACCTGGGTTT 256 Query 138 CGTGTTTCGAATTCACTTTGAAGAAAAAGTTTCTCAATTTCGCCTGAAAACCCACATGGG 197 |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 257 GGTGTTTCGGATTCACTTTGAAGAAAAAGTTTTTCAATTTCGCCTCAAAACCCACATGGG 316 Query 198 ATTGGAACTAAACACTAGACTGACAAGAAGAAG-AAGAGTAATCA-TCATCGAGTGTTTA 255 ||||| |||||||||| ||||||||| ||| || ||||||||| | |||||||||||||| Sbjct 317 ATTGGCACTAAACACTGGACTGACAACAAG-AGCAAGAGTAAT-AGTCATCGAGTGTTTA 374 Query 256 TTACGATTATGTCCTTAACGAAATCTTCAGAATCAGTTTTCACTgaagaagaagaagaag 315 |||||||||||||| | | || | ||| | | || | |||||||| Sbjct 375 TTACGATTATGTCC-T--C--AA----C-GAA--A-TCTT--C---------AGAAGAAG 410 Query 316 aTTCCTTTAGCGGTCGATACACGT-TATGGATCAAAGAAGCATTAGAGGAGCTTCCACAC 374 ||||||||| |||||||||||| | ||||||||| |||||| ||||| |||||||| ||| Sbjct 411 ATTCCTTTAACGGTCGATACAC-TCTATGGATCACAGAAGCTTTAGAAGAGCTTCCTCAC 469 Query 375 AATTTCACAATCACCGACCCGTTTATTTCGGGTCACCCGATTGTTTTCGCGAGCTTAGGG 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 AATTTCACAATCACCGACCCGTTTATTTCGGGTCACCCGATTGTTTTCGCGAGCTTAGGG 529 Query 435 TTTTTGAAAATGACTGGCTATTCACGAGAAGAAGTGATCGGAAGAAACGGTAAAGTTTTT 494 ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| Sbjct 530 TTTTTGAAAATGACTGGGTATTCACGAGAAGAAGTCATCGGAAGAAACGGGAAAGTTTTT 589 Query 495 CAAGGACCTAAGACTAATCGAAGATCGATCATGGAGATTCGTGAAGCGATTCGTGAAGAG 554 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 590 CAAGGACCTAAGACTAATCGAAGATCGATCATGGAGATTCGTGAAGCTATTCGTGAAGAG 649 Query 555 AGATCAGTGCA-AGTGAGCTTGTTGAATTATCGTAAATCTGGGTCTCCGTTTTGGATGTT 613 ||||| || | || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 650 AGATCTGT-TATGGTTAGCTTGTTGAATTATCGTAAATCTGGATCTCCGTTTTGGATGTT 708 Query 614 GTTTCATATGTGTCCTGTTTTTGGGAAAGATGATGGTAAAGTCACCAATTTTGTGGCGGT 673 |||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 709 GTTTCATATGAGTCCTGTTTTTGGGAGAGATGATGGTAAAGTCATCAATTTTGTGGCGGT 768 Query 674 TCAGGTCCCGATTTCGGGACGAGAACATCATCGGAAGAAGTTGAGAAATGTCGGAGATTT 733 |||||||||||||||||||| || | | |||| | | | || |||||||| | Sbjct 769 TCAGGTCCCGATTTCGGGACAAG-A-A-CATC-G--G-A----AG----CTCGGAGATAT 813 Query 734 GTCGTCGGATAC-TTCT---CCGACATTTGGTTCTTGTCGAAGAGAGGTTTGTTTTGGTA 789 |||||||||| | |||| | |||||||||||||||||||||||||||||||||| Sbjct 814 GTCGTCGGAT-CATTCTGAGTTGGTGTTTGGTTCTTGTCGAAGAGAGGTTTGTTTTGGTA 872 Query 790 ATTTCGTGTGTCAGGATCGAGCTTTACCAGTGGAATGTGATGATGATGAACAAGGATTAG 849 ||||||| |||| | | ||||| ||||||||||||||||||||| | |||||||||| Sbjct 873 GTTTCGTGCATCAGAAACAAGCTTCACCAGTGGAATGTGATGATGA-G--CAAGGATTAG 929 Query 850 AGGATTGGGAACAGTGTGAAGCGAGTGAGTCCGAGAAGCTGAAAGCTACGGAAGCTATTA 909 ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||| Sbjct 930 AGGATTGGGAACACTGTGAAGCGAGTGAGTCTGAGAAGCTGAAAGCTGTGGAAGCAATTA 989 Query 910 ACAATGTGTTATCTATCTTAGTGCATTACAGCGAGTTGAGTGGTAGATTAGTCTGCGGAA 969 |||||||||||||||| ||| || ||||||| ||||||||||||||||||||||||||| Sbjct 990 ACAATGTGTTATCTATTTTAACGCGTTACAGCAAGTTGAGTGGTAGATTAGTCTGCGGAA 1049 Query 970 AGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGCTCGTCGTTAGTTATTTCTCTCGGTA 1029 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1050 AGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGTTCGTCGTTGGTTATTTCTCTCGGTA 1109 Query 1030 GAATCAAACAAAGTTTCGTATTAACCAATCCATGCTTACCAGACATGCCTATCATTTATG 1089 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 1110 GAATCAAACAAAGTTTCGTATTAACCAATCCATGCTTACCCGACATGCCTATCGTTTATG 1169 Query 1090 CGAGTGATGCCTTTTTGACACTGACCGGTTACAAGAGACAGGAAGTGTTGGGACAAAACT 1149 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1170 CGAGTGATTCCTTTTTGACACTGACCGGTTACAAGAGACAGGAAGTGTTGGGTCAAAACT 1229 Query 1150 GTAGATTTCTGAGTGGGGTTGATACTGATTCCTCAGTACTATACGAGATGAAGGAATGCA 1209 | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1230 GCAGATTTCTGAGTGGGGTTGATACCGATTCCTCAGTACTATACGAGATGAAGGAGTGCA 1289 Query 1210 TCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGTAACAGAAAAGATAAGA 1269 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1290 TCTTAAAGGGACAATCATGCACAGTTCAAATACTAAATTACAGTAACAGAAAAGATAAGA 1349 Query 1270 GCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGACAGCAT 1329 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1350 GCTCATTCTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGACAGCAT 1409 Query 1330 ATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTAAAGAGCTGAGAC 1389 |||||||||||||||| || |||| |||||||||||||||||||| |||||||||||||| Sbjct 1410 ATTTTGTGGGTGTTCAGGTGGAAGGAAGTTGTAGAAATACTGAAAGTAAAGAGCTGAGAC 1469 Query 1390 CAGAGACGAGACAACTGAGTGTTGTCGGTGCGGTTAGAGTTGCGGTTAGAAGCTCATTGA 1449 ||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1470 CAGAGACAAGGCAACTGAGTGTGGTCGGTGCGGTTAGAGTTGCGGTTAGGAGCTCATTGA 1529 Query 1450 TGGTGACATGCTAATATACGCCAGAAAGAAAATG-CGTC---GACTTA---G-AGAA--G 1499 |||| |||||||||| |||||| ||||||||||| | || || | | |||| | Sbjct 1530 TGGTAACATGCTAATGTACGCCCGAAAGAAAATGTC-TCTTAGAAAGAAAAGTAGAAAAG 1588 Query 1500 AGTCTAAAGTGAATTGGACATACATCTTTACTAT 1533 ||| | | |||||||||| ||||||||||||||| Sbjct 1589 AGTATGATGTGAATTGGATATACATCTTTACTAT 1622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59268421220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5