BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02790.1 Length=2067 Score E Sequences producing significant alignments: (Bits) Value Ahg484185 jgi|Araly1|484185|fgenesh2_kg.5__177__AT2G02790.1 3101 0.0 > Ahg484185 jgi|Araly1|484185|fgenesh2_kg.5__177__AT2G02790.1 Length=2044 Score = 3101 bits (1679), Expect = 0.0 Identities = 1930/2050 (94%), Gaps = 21/2050 (1%) Strand=Plus/Plus Query 1 GTGTAATTTCTCACTGTAACCACtttttggttttttAGGTCACTGCTCCGACG-AAGACC 59 ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| | Sbjct 1 GTGTAATTTCTTACTGTATCCACTTTTTGGTTTTTTAGGTCACTGCTCCGACGAAAGAGC 60 Query 60 CTTCTAACAAGACAACATTTTGAAGAACATAACAGTAACGATTCGCTACATTGTTTCTAT 119 |||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| Sbjct 61 CTTCTAACAAGACAACATTTTGAAGAACGTAAGAGTAACGATTCGGTACATTGTTTCTAT 120 Query 120 TTTTGTAGCAAGTTTCTAATTGTAGCCATTAGAAAAGATGGGAAAGACTCCAAGTCCTGG 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTTGTAGCAACTTTCTAATTGTAGCCATTAGAAAAGATGGGAAAGACTCCAAGTCCTGG 180 Query 180 TAAATGGATCAAGTCTCTTCTTGGAAAGAAGTCATCGAAATCGAGTTTGGAGAAAGGAGG 239 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 181 TAAATGGATCAAGTCTCTTCTTGGGAAGAAGTCATCCAAATCGAGTTTGGAGAAAGGAGG 240 Query 240 CGAAAAATTGAGATCTGCAAAGAAAGAAGAGCTTGTGGTGAAGGTGAAGGATAATAATGT 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CGAAAAATTGAGATCTGCAAAGAAAGAAGAGCTTGTGGTGAAGGTGAAGGATAATAATGT 300 Query 300 CTCAAAGTTACCTACCGAACCACCTGTAGTTTCATCACAAGAAGTTGCAGCTACTCAAAC 359 ||| ||||||||| | ||||| |||| | ||||||| ||||||||||||||||||||| | Sbjct 301 CTCCAAGTTACCTTCTGAACCGCCTGCAATTTCATCTCAAGAAGTTGCAGCTACTCAATC 360 Query 360 TGTGGTCGTTCCTGATGTTGTAATTGCTGAGAAGCAACTAAGTGGAGACATTGAAGGCGA 419 ||| || |||||||||||||| ||| | |||||||| | ||| ||||||||||||||| | Sbjct 361 TGTAGTAGTTCCTGATGTTGTCATTACCGAGAAGCAGCCAAGCGGAGACATTGAAGGCAA 420 Query 420 TGAGTCATCGAATGTGAATCTTGAGTCAGGGAATGACTCTGAAGAAGTCAAGCTTGAAGA 479 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 421 TGAGTCATCGAATGTGAATCTTGAGTCAGGGAATGACTCTGAAGAAGGAAAGCTTGAAGA 480 Query 480 AGCTGCTACAAAGGTTCAAGCTGCTTTGAGAGCTCAGCAGGCCCGTGAAGAATCTCAGAA 539 ||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||||| Sbjct 481 AGCTGCTACAAAGGTTCAAGCTGCTCTCCGAGCTCATCAGGCCCGTGAAGAATTTCAGAA 540 Query 540 CCTCAAAGGTATCACAAGGGTGCAAGCAGTTATCCGTGGTCACTTGGTCAGAAGACAAGC 599 |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 541 CCTCAAAGGTATCATAAGGCTGCAAGCAGTTATCCGTGGTCACTTGGTTAGAAGACAAGC 600 Query 600 TGTTGCTACTTACTCGTGCATTTGGGGAATTGTGAAAGTACAAGCACTTGTTCGCGGGAA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGTTGCTACTTACTCGTGCATTTGGGGAATTGTGAAAGTACAAGCACTTGTTCGCGGGAA 660 Query 660 GAAAGCTAGATCTTCAGAAACCGTGGCTCAACTTCAGAAAACAAATACGGAAACCGAGAC 719 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 661 GAAAGCTAGATCTTCAGAAACCGTGGCTCAACTCCAGAAAACAAATACGGAAACCGAGAC 720 Query 720 TTCTGAAACTTTGCAAGGAAGCACATACAGTTGGATGGAGAACCCTACAAAGCTCTCAAT 779 ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct 721 TTCTGAAGCTTTGCAAGGAAGCACTTACAGTTGGATGGAGAATCCTACAAAGCTCTCCAT 780 Query 780 GATTGATAAGCTTTTGGTTTCGTCACCAACAACATTGCCTCTGAAGATCCAGTATAGTCC 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GATTGATAAGCTTTTGGTTTCGTCACCAACAACATTGCCTCTGAAGATCCAGTATAGTCC 840 Query 840 TGAAGATCCTAACTCAGCCAAGGTGTGGCTTGGACGCTGGACGCAGTTGCAGGTTTGGGC 899 ||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 841 TGAGGATCCTAACTCAGCCAAGGTGTGGCTTGGACGCTGGACGCAATTACAGGTTTGGGC 900 Query 900 TCCTGGTCCAT-TGGTGGTTAAGAATCTGGTACCAAAATCTCAGACAAAGAAGCGAAGTT 958 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TCCTGGTCC-TCTGGTGGTTAAGAATCTGGTACCAAAATCTCAGACAAAGAAGCGAAGTT 959 Query 959 TTCAAGCAGTCGAAGCGGAAAAGGGAAAACTTAAGAGAGGTGTCAGGAAACCAACCGGTG 1018 ||||| |||| ||| ||||||||||||||||||||| |||||||| ||||||| |||||| Sbjct 960 TTCAAACAGTTGAAACGGAAAAGGGAAAACTTAAGAAAGGTGTCAAGAAACCATCCGGTG 1019 Query 1019 TTTCAACTACTGCAAACAGCTCTACTAGCCGTTCAACAGCTGACAACGAAAAGCCTAAGC 1078 ||||| ||| | |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1020 GTTCAAATACGGGGAACAGCTCGAGTAGCCGTTCAACAGCTGACAACGAAAAGCCTAAGC 1079 Query 1079 GAACTGTGAGGAAGGCCTCCACACTTGGTAAAGAACTTTCGAA-AATCGAGAACGACAAG 1137 |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| Sbjct 1080 GAACTGTGAGGAAGGCCTCCACACTTGGTAAAGAACTTTC-AAGAATCGAGAATGACAAG 1138 Query 1138 TCTAAGCAGAGTTCAAGAAAAAGTACTAGCGCCATAAAGGAAGGGTCTTCAGTGGAGGTT 1197 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 1139 TCTAAGCAGAGTTCAAGGAAAAGTACTAGCGCCATAAAGGAAGGGTCTTCAGTGGATGTT 1198 Query 1198 AAAGATGAGAAGCCTAGGATTAGTCATAAAAA-GGCTTCACTTTCTAATGGGATAGGGAA 1256 ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| Sbjct 1199 AAAGATGAGAAGCCTAGAATTAGTC-TAAAAAAGGCTTCACTTTCTAATGGGATAGGGAA 1257 Query 1257 AGCTACCCGCAAATCAGCTGAGAAGAAGAAAGAGATTGCAGATGCAGTGCAGAAAGAATT 1316 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1258 AGCTACCCGCAAATCCGCTGAGAAGAAGAAAGAGATTGCAGATTCAGTGCAGAAAGAATT 1317 Query 1317 GCCTATTGAAGAGGTTTCAGTTTCTTTAGTTGATGCTCCTGAAGATGAAAAGATGAATCT 1376 | |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| Sbjct 1318 GTCTATTGAAGAGGTTTCAGCTTCTGTAGCTGATGCTCCTGAAGATGAAAAGATGAATCT 1377 Query 1377 TATCCCTGTAACAATTTCGAAAGAGTCTGATCTCGATAAAGATGAGAAGTCACTGGTCCT 1436 |||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||| Sbjct 1378 TATCCCTGAAACAATTTTGAAAGAGTCTGATCTCGATAAAGATGAGAAATCACCGGTCCT 1437 Query 1437 GGATAAGCCGGAGCAAGATGAACTCAGGACTGCCGAGAGAGATGATAAAGCTGAAGAGGA 1496 |||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 1438 GGATAACCCGGAGCAAGAGGAACTCAAGACTGCCGAGAGAGATGATAAAGCTGAAGAGGA 1497 Query 1497 ACTCAAGACTGCAGAGAGAGATGATAGTGCTGAAGAGAAAATCCAGGAGCCAGACGCGCA 1556 |||||||||||| ||||||||||| | ||||||||| ||||||| |||||||||| ||| Sbjct 1498 ACTCAAGACTGCCGAGAGAGATGAGAAAGCTGAAGAGGAAATCCAAGAGCCAGACGTGCA 1557 Query 1557 GATAAGCTCTGAGAATGGAAATGTTGCTTCTGAGAACACAAAGCCAAGCGATAGACGAGC 1616 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1558 GATAAGCTCTGAGAATGGAAATGTTGCTTCTGAGAACACAAAGCCAAGCGATAGGCGAGC 1617 Query 1617 TTCATTACCTGCAAAGATTGAAAATCATCATCAAGACGATGGGCTTACACAGAGTGGGAG 1676 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1618 TTCATTACCTGCAAAAATTGAGAATCATCATCAAGACGATGGGCTTACACAGAGTGGGAG 1677 Query 1677 AAAAATCCCAAGCTATATGGCTCCAACTGCATCTGCAAAGGCAAGAATAAGAGGACAAGG 1736 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1678 AAAAATCCCAAGCTACATGGCTCCAACTGCATCTGCAAAGGCAAGAATAAGAGGACAAGG 1737 Query 1737 GTCTCCGAGGATAGCTCAAGAGAAGCCTGAGAAAAATGGGACAACACGGCGCCACTCTCT 1796 ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1738 GTCTCCGAGAATTGCTCAAGAGAAGCCTGAGAAAAACGGGACAACACGGCGCCACTCTCT 1797 Query 1797 TCCTCCTGCAGCCAATGGTAAGCTGAGTACAATGTCTCCAAGAGCTCACAGACTTCTCAT 1856 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1798 TCCTCCTGCAGCCAATGGTAAGCTGAGTACAATGTCTCCAAGGGCTCACAGACTTCTCAT 1857 Query 1857 AGCTTCAGCCAAAGGATCAATGAACAGTGACAGATCTTTTTCATCTTCCAAGGACATTGG 1916 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1858 AGCTTCAGCTAAAGGATCAATGAACAGTGACAGATCTTTTTCGTCTTCCAAGGACATTGG 1917 Query 1917 TGGTAAGAGGTTTAAACCTATAACTA-T-A--CACAAGCCTTTTTGTCAATTTCTTTTAC 1972 ||||||||||||||||||||||| || | | ||||||||| || |||| ||||||| Sbjct 1918 TGGTAAGAGGTTTAAACCTATAATTAATTATACACAAGCCTCTT---CAATAACTTTTAC 1974 Query 1973 A-T-T--A-T--CTACATCCTTTTAACAAATTTAGTTCATGTTTATATCAGACAAGTCGA 2025 | | | | | |||||| ||||||||| |||| |||||||||||| ||||||||||||| Sbjct 1975 ACTATCTAGTATCTACATACTTTTAACACATTTCGTTCATGTTTATTTCAGACAAGTCGA 2034 Query 2026 CGAAAGCTGA 2035 |||||||||| Sbjct 2035 CGAAAGCTGA 2044 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77742190045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5