BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02930.1 Length=939 Score E Sequences producing significant alignments: (Bits) Value Ahg490313 jgi|Araly1|490313|fgenesh2_kg.6__3447__AT4G02520.1 1341 0.0 Ahg484202 jgi|Araly1|484202|fgenesh2_kg.5__194__AT4G02520.1 1194 0.0 > Ahg490313 jgi|Araly1|490313|fgenesh2_kg.6__3447__AT4G02520.1 Length=966 Score = 1341 bits (726), Expect = 0.0 Identities = 868/932 (93%), Gaps = 27/932 (3%) Strand=Plus/Plus Query 10 TACTTGTGTGTTATTTCATCACCTTCACCTTCAACATCAAACATCACATCTCTTTCTCTT 69 ||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 21 TACTTGTGTCTTATTTCACCACCTTCACCTTCAACATCAAACATCACA------TCTC-- 72 Query 70 TTATCTCTTTTTCTCGGTCTTCAAAGAGTTTCTTAGTTACCAAATCAATGGCAGGTATCA 129 ||| ||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 73 TTA---------CTCAGTCTTCAAAGAGTTTCTTAGTAACCAAATCAATGGCAGGTATCA 123 Query 130 AAGTTTTCGGACACCCAGCTTCCACTT-CCACCAGGAGAGTCCTCATCGCCCTCCATGAG 188 |||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||| Sbjct 124 AAGTTTTCGGACACCCAGCTTCCA-TTGCCACCAGGAGAGTCCTCATCGCCCTCCACGAG 182 Query 189 AAAAACCTCGACTTTGAGCTCGTTCATGTTGAACTCAAAGACGGTGAGCACAAGAAGGAG 248 || |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 183 AAGAACCTCGACTTTGAGCTCGTTCATATCGAACTCAAAGACGGTGAGCACAAGAAGGAG 242 Query 249 CCTTTCCTCTCCCGCAACCCTTTTGGTCAAGTTCCAGCCTTTGAAGATGGAGACCTCAAG 308 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 243 CCTTTCCTCTCCCGCAACCCTTTTGGACAAGTTCCAGCCTTTGAAGATGGAGACGTCAAG 302 Query 309 CTCTTCGAATCAAGAGCGATTACTCAGTACATAGCTCACCGA-TACGAAAACCAAGGAAC 367 |||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| Sbjct 303 CTCTTCGAATCAAGAGCGATTACTCAGTACATAGCTCACC-AGTATGAAAACCAAGGAAC 361 Query 368 CAACCTTCTCCCAGCTGACTCCAAGAACATAGCTCAGTATGCAATCATGTCCATTGGAAT 427 ||||||||||| ||| ||||||||||||||| ||||||| ||||||||| |||||||||| Sbjct 362 CAACCTTCTCCAAGCCGACTCCAAGAACATATCTCAGTACGCAATCATGGCCATTGGAAT 421 Query 428 ACAAGTAGAAGCTCATCAGTTCGATCCC-GTGGCTTCAAAGCTTGCTTGGGAACAAGTAT 486 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| Sbjct 422 GCAAGTAGAAGCTCATCAGTTCGA-CCCAGTGGCTTCAAAGCTTGCTTGGGAACAATTAT 480 Query 487 TCAAGTTCAACTATGGCTTGAACACAGACCAAGCCGTTGTTGCAGAAGAAGAAGCTAAGT 546 |||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 481 TCAAGTCCATCTACGGCTTGACCACAGACCAAGCCGTTGTTGCAGAAGAAGAAGCTAAGT 540 Query 547 TAGCCAAGGTCCTTGATGTCTACGAGGCTAGGCTGAAGGAGTTCAAGTATTTGGCTGGTG 606 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 541 TAGCCAAGGTCCTTGATGTCTACGAGGCTAGGTTGAAGGAGTTCAAGTACTTGGCTGGTG 600 Query 607 AAACTTTCACTTTGACCGATCTTCACCACATTCCCGTGATTCAATACCTGCTCGGAACTC 666 | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 601 ACACTTTCACTTTGACTGATCTTCACCACATTCCCGCGATTCAATACCTGCTCGGAACTC 660 Query 667 CCACCAAGAAGCTCTTCACGGAGCGTCCACGTGTCAACGAGTGGGTGGCTGAGATCACCA 726 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 661 CCACCAAGAAGCTCTTCACCGAGCGTCCACGTGTCAACGAGTGGGTGGCTGAGATCACCA 720 Query 727 AGAGGCCAGCTTCAGAGAAGGTTCTGTGAGAAATTTCTAAAAGGACAAAAGTGGTTTTGC 786 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 721 AGAGGCCAGCTTCAGAGAAGGTTCTGTGAGAAATTTCTAAAAGGAAAAAA-TGGTTTTGC 779 Query 787 TTCAGTCACAGTAATAATGCT-ACAAGTAAATAAGCGTCTGCCTCATTGCCCAGTTTCTC 845 ||||||||||||||||||||| | || |||||||||| || |||||||||||| |||||| Sbjct 780 TTCAGTCACAGTAATAATGCTTA-AATTAAATAAGCGGCTACCTCATTGCCCAATTTCTC 838 Query 846 AGTACTTTCTTTCTGTTGTATCCTCTGTTTTTGTTTCAGCTTATGTGAGTGTGTGTACGT 905 |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 839 AGTATTTTCTTTCTGTTGTATCCTCTGTTTTTGTTTCAG-TTATGTGAGTGTGTGTATGT 897 Query 906 TCTTGAGAGTATCTTAGGCAAAAACTATATAT 937 ||||||||||||||| |||||||||||| ||| Sbjct 898 TCTTGAGAGTATCTTTGGCAAAAACTATTTAT 929 > Ahg484202 jgi|Araly1|484202|fgenesh2_kg.5__194__AT4G02520.1 Length=931 Score = 1194 bits (646), Expect = 0.0 Identities = 703/731 (96%), Gaps = 2/731 (0%) Strand=Plus/Plus Query 39 TTCAACATCAAACATCACATCTCTTTCTCTTTTATCTCTTTTTCTCGGTCTTCAAAGAGT 98 |||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 35 TTCAACATCAGACATCACATCTCTTACTCTTTTGTCTCTTTTTCTCGGTCTTCAAAGAGT 94 Query 99 TTCTTAGTTACCAAATCAATGGCAGGTATCAAAGTTTTCGG-ACACCCAGCTTCCACTTC 157 |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||| Sbjct 95 TTCTTAGTAACCAACTCAATGGCAGGTATCAAAGTTTTCGGAAC-CCCAGCTTCCACTTC 153 Query 158 CACCAGGAGAGTCCTCATCGCCCTCCATGAGAAAAACCTCGACTTTGAGCTCGTTCATGT 217 |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 154 AACCAGGAGAGTCCTCATCGCTCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCATGT 213 Query 218 TGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGTCA 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 TGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGTCA 273 Query 278 AGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTA 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 AGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTA 333 Query 338 CATAGCTCACCGATACGAAAACCAAGGAACCAACCTTCTCCCAGCTGACTCCAAGAACAT 397 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 334 CATAGCTCACCGATACGAAAACCAAGGAACCAACCTTCTCCAAGCTGACTCCAAGAACAT 393 Query 398 AGCTCAGTATGCAATCATGTCCATTGGAATACAAGTAGAAGCTCATCAGTTCGATCCCGT 457 ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| Sbjct 394 AGCTCAGTATGCAATCATGGCCATTGGACTGGAAGTAGAAGCTCATCAGTTCGATCCCGT 453 Query 458 GGCTTCAAAGCTTGCTTGGGAACAAGTATTCAAGTTCAACTATGGCTTGAACACAGACCA 517 ||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||| Sbjct 454 GGCTTCAAAGCTTGCTTGGGAACAAGTATACAAGCTCATCTATGGCTTGACCACAGACCA 513 Query 518 AGCCGTTGTTGCAGAAGAAGAAGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAGGCTAG 577 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 514 AGCCGTTGTTGCAGAAGAAGAAGCTAAGTTGGCCAAGGTCCTTGATGTCTACGAGGCTAG 573 Query 578 GCTGAAGGAGTTCAAGTATTTGGCTGGTGAAACTTTCACTTTGACCGATCTTCACCACAT 637 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 574 GCTCAAGGAGTTCAAGTATTTGGCTGGTGACACTTTCACTTTGACCGATCTTCACCACAT 633 Query 638 TCCCGTGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACGGAGCGTCCACG 697 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 634 TCCCGTGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGTCCACG 693 Query 698 TGTCAACGAGTGGGTGGCTGAGATCACCAAGAGGCCAGCTTCAGAGAAGGTTCTGTGAGA 757 ||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| Sbjct 694 TGTCAACGAGTGGGTCGCTGAGATCACCAACAGGCCAGCTTCCCAGAAGGTTCAGTGAGA 753 Query 758 AATTTCTAAAA 768 ||||||||||| Sbjct 754 AATTTCTAAAA 764 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34844346138 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5