BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02955.1 Length=2444 Score E Sequences producing significant alignments: (Bits) Value Ahg896256 jgi|Araly1|896256|Al_scaffold_0005_222 1652 0.0 Ahg943611 jgi|Araly1|943611|scaffold_604155.1 411 2e-113 > Ahg896256 jgi|Araly1|896256|Al_scaffold_0005_222 Length=2097 Score = 1652 bits (894), Expect = 0.0 Identities = 1113/1220 (91%), Gaps = 9/1220 (1%) Strand=Plus/Plus Query 140 ATGATCTGCACG-GAGTGCGAAAACGACGCCTTTGACGAAGAAGACGACGGATATTACTA 198 ||| |||||| | |||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGCTCTGCA-GAGAGTGCGACAACGACGCCTTTGACGAAGAAGACGACGGATATTTCTA 59 Query 199 CTGCCAACGATGCGGTGTTCAGGTTGAAAATCTGATCCAAACCGGCGTCGACGACGGCGA 258 |||| ||||||| |||||||||| |||| |||| |||||||||||||||||||| ||||| Sbjct 60 CTGCAAACGATGTGGTGTTCAGGCTGAAGATCTTATCCAAACCGGCGTCGACGATGGCGA 119 Query 259 TTTAATCGGTGAAGGTGGAGGTACTCAGGGCGCTCTGTATAACCCCAAACATCGCCGGAC 318 ||||||||||||||||||||||||||| ||||| | ||| |||||| | ||||||| || Sbjct 120 TTTAATCGGTGAAGGTGGAGGTACTCACGGCGCAATATATGACCCCAGATATCGCCGTAC 179 Query 319 TGA-ACCACAACCAATCACTCCTTCACAGCCTCGTTTTACAGATGACACAAGCCGTTACT 377 | | | |||||||| ||||||||||||||||||||| ||||||||||||| |||||| Sbjct 180 T-ATAACACAACCAGTCACTCCTTCACAGCCTCGTTACACAGATGACACAATACGTTACA 238 Query 378 CTCAGTTTAAATCTCAGTTTGAATCTGAAAACG-G--GAATAAGGAATTGCCCCGGGAAG 434 |||| |||||||||||| |||||||||||| || | ||| ||||| |||||| | |||| Sbjct 239 CTCATTTTAAATCTCAGCTTGAATCTGAAATCGAGAAGAAGAAGGATTTGCCCAGTGAAG 298 Query 435 TGAAGAGAGCGCCTGACAGTTATGTCGATAAAGAGCCAACGGAGCCTGTGGATTTTGCAG 494 ||||||||| |||||| | |||| |||| |||||||||||||||||||||||||||| || Sbjct 299 TGAAGAGAGAGCCTGAGATTTATCTCGAGAAAGAGCCAACGGAGCCTGTGGATTTTGGAG 358 Query 495 CAGAGACTTTGAGTTATGAGAATTATTACGATGAAGCAAGAGATAGATATGTTAAAGCTT 554 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 359 CAGAGACTTTAAGTTATGAGGATTATTACGATGAAGCAAGAGATAGATATGTTAAAGCTT 418 Query 555 TTCTTATGATGATCACTTATCAGTGTGATGCTTTGGTTGACAAGTTTAATGTCACTCCTT 614 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TTCTTATGATGATTACTTATCAGTGTGATGCTTTGGTTGACAAGTTTAATGTCACTCCTT 478 Query 615 TGATTATTGGTTTGGTTGGACCTATCTCTTTGCGTTATGTGGCTCTCTCTGGCGTCTACC 674 ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 479 TGATTATTGGTTTGGTTGGACCTATCTCTTTACGTTACGTGGCTCTCTCTGGCGTTTACG 538 Query 675 ATAAAGATTGGGCCAATAACGCCATTCGTGATTCCGAGCATCAGTCAGAAGATGGTGAAG 734 || | |||||||| |||| ||||||||||||||||| | ||| |||||||||||||||| Sbjct 539 ATGATGATTGGGCGGATAAAGCCATTCGTGATTCCGAACTTCAATCAGAAGATGGTGAAG 598 Query 735 TAAAAGATGCTAAGAGGCTTAAAAGACACAAAGCTGAGCCGCGTAACATAGATGGTAAAA 794 |||||||||||||| ||| ||||| ||| ||||| ||||| |||||| |||||||||||| Sbjct 599 TAAAAGATGCTAAGCGGCCTAAAACACAGAAAGCCGAGCCTCGTAACTTAGATGGTAAAA 658 Query 795 GAGCAGTGACGATATGGTTTGGTATACTTAAAAAGACTATGCCTTTATCGAGTTCTTTGG 854 ||||||||||||||||| || || | |||||||||||| ||||||||||||||||||||| Sbjct 659 GAGCAGTGACGATATGGGTTAGTCTGCTTAAAAAGACTCTGCCTTTATCGAGTTCTTTGG 718 Query 855 TGATATCTTTCCTTGCTTGTCACCAAGCGGGAGCGCCTGTTCTACCCACGGATATTGTGA 914 ||||||||| |||||||||||||| |||||||| || |||||||| ||||||||||||| Sbjct 719 CGATATCTTTTCTTGCTTGTCACCATGCGGGAGCACCGGTTCTACCAACGGATATTGTGA 778 Query 915 GATGGGCACGAGAAGGAAAGCTTCCGTATTTGTCTTGTTTTCTCGATATTAGAGAGCAAA 974 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 779 GATGGGCACGAGAAGGAAAGCTTCCGTATTTGTCTTGTTTTATCGATATTCGAGAGCAAA 838 Query 975 TGGGAGAGCGATCAGCTGCGTGTCCGGTGAAAGTAAGTATAATGGCTAGGCCTTTTCAGG 1034 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 839 TGGGAGAGCGATCAGCTGCGTGTCCGGTGAAAACAAGCATAATGGCTAGGCCTTTTCAGA 898 Query 1035 TTATTTCTGCTCAGATGTTGGAAGCACGAGCCTCTGTG-ATTGCTGATACTATTGGTTTG 1093 |||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||| Sbjct 899 TTATTTCTGCTCAGATGTTGGAAGCAGGAGCCGCT-TGCATTGCTGATATTATTGGTTTG 957 Query 1094 CCTTTGCCTCCTGTGAATTTCTATGGTATAGCTTCAAACTATATAAAGCAGTTATCTATT 1153 |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 958 CCTTTGCCTCCTGTAAATTTCTATGGTATAGCGTCAAACTATATAAAGCGGTTATCTATT 1017 Query 1154 CCTGAGGACAAGATTCTTGATCTGGCGCGTCTTATACAGAACTGGTCATTGCCTCCTGAG 1213 |||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||| || Sbjct 1018 CCTGAGGATAAGATTCTTGAACTGGTGCGTCTTATACAGAACTGGTCACTGCCTCCAGAA 1077 Query 1214 TTATATTTATCGACGAATGAGCAGAAGCTTCCTAGCCGTGTGTGTGTCATGTCTATTCTG 1273 || ||| |||||| |||||||| ||||||||||| ||| |||||||||||||||||||| Sbjct 1078 TTGTATCTATCGAAGAATGAGCTGAAGCTTCCTACCCGGGTGTGTGTCATGTCTATTCTT 1137 Query 1274 ATTGTAGCTATTCGGATGCTTTATAACATAAATGGTTTGGGTGTGTGGGAACGGAGTTTG 1333 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 ATTGTAGCTATACGGATGCTTTATAACATAAATGGTTTGGGTGTGTGGGAACGGAGTTTG 1197 Query 1334 GGGTTTGTCAATGCTAGTGA 1353 | |||||| ||||||||||| Sbjct 1198 GAGTTTGTTAATGCTAGTGA 1217 Score = 1048 bits (567), Expect = 0.0 Identities = 721/789 (91%), Gaps = 36/789 (5%) Strand=Plus/Plus Query 1387 GAAAGCAACTGAATTCGATACTC-AGGAGCTTCTGAAGAACCTTGAAGCTAAATATCATG 1445 ||||||||| |||||||||| | |||||||||||||||||||||||||||||||| ||| Sbjct 1311 GAAAGCAACCAAATTCGATAC-CAAGGAGCTTCTGAAGAACCTTGAAGCTAAATATTATG 1369 Query 1446 AGGTCGCTGCAGAAACCCTTGAATCCGAGAAGGATCTGGTGTCATATCTATCGCTCGGGA 1505 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1370 AGGTCGCTGCAGAAACCCTTGAATCCGAGAAGGATCTGCTGTCATATCTATCGCTCGGGA 1429 Query 1506 AAAACGAGTTCTTTGCTGGTTTAGAAGAAGATTCACCTGACGATACATACAGAATTGTTG 1565 |||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| Sbjct 1430 AAAACGAGTTCTTTGCTGGTTTGGAAGAAGATTTACCTGACGATACATACAGAACTGTTG 1489 Query 1566 ATAACTTGTGGAATGGTTATCCAAAAGACGAGGATATT-GAA---TGT----CT--ACCC 1615 ||||| |||||||||||||||||||||| |||||| || ||| ||| || |||| Sbjct 1490 ATAACCTGTGGAATGGTTATCCAAAAGAGGAGGAT-TTCGAACGGTGTAGGACTCCACCC 1548 Query 1616 AAGAGGGGGAGAGACTGGGACGATGATGTATCACTTAACCAACTTTCATTATACGATAGC 1675 |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 1549 AAGAGGGGGAGAGACTGGGATGATGATGTATCACTTAACCAACTTTCATTAGAAGATAGC 1608 Query 1676 AGATTTAGCGATGGAAACAATCCTTGTAGTAGCTCTTCAAGGAGAAACGAAAGTGTATCA 1735 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1609 AAATTTAGCGATGGAAACAATCCTTGTAGTAGCCCTTCAAGGAGAAACGAAAGTGTATCA 1668 Query 1736 ATAGG-TCTTGATTTATCTTCTTCAGAACACCGAGAATCATCATCACCAGAGAA-----A 1789 || || || |||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 1669 AT-GGATCGTGATTTATCTTCTTCAGAACACGGAGAATCATCATCACCAGAGAATCCTCA 1727 Query 1790 T--T-AA-AAGAG--A-T---------AGCGATAAAAAGACTAATTACAGACATGGGAGA 1833 | | || ||||| | | |||||||||||||||||| |||||||||||||| Sbjct 1728 TCATCAAGAAGAGAAATTAAAGGAAAGAGCGATAAAAAGACTAATAACAGACATGGGAGA 1787 Query 1834 TGACTTGTTCTGTTACATACCACCTCGTGTGAAGGTAAAGAGACTAGACTATCTTCAGTA 1893 | |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || || Sbjct 1788 TAACTTGTTCTGTTACTTACCACCTCGTGTGAAGGTAAAGAGACTAGATTATCTACAATA 1847 Query 1894 CGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCATGCAGATTACTACATTCT 1953 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1848 TGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCACGCAGATTACTACATTCT 1907 Query 1954 TTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATGCATAGAGGTGTGTT 2013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1908 TTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATGCATAGAGGTGTGTT 1967 Query 2014 GAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAGGTTTTGCATCTAAC 2073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1968 GAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAGGTTTTGCATCTAAC 2027 Query 2074 TCGACCTCTTATGACATGTAAACACTGTTGTGATGATGGGAATATTGGAGAAGATCAAGA 2133 || |||| ||||||||||| | ||||||||||||| ||||||| ||||||||||||||| Sbjct 2028 TCCACCTTTTATGACATGTGACCACTGTTGTGATGGTGGGAATGCTGGAGAAGATCAAGA 2087 Query 2134 TGATTGATA 2142 ||||| ||| Sbjct 2088 TGATTCATA 2096 > Ahg943611 jgi|Araly1|943611|scaffold_604155.1 Length=1683 Score = 411 bits (222), Expect = 2e-113 Identities = 473/589 (80%), Gaps = 37/589 (6%) Strand=Plus/Plus Query 779 AACATAGATGGTAAAAGAGCAGTGACGATATGGTTTGGTATA-CTTAAAAAGACTATGCC 837 ||| || |||| ||||||||||| ||||||||||| || | ||||||||| || |||| Sbjct 457 AACTTATATGGAAAAAGAGCAGTAACGATATGGTTAAGT-CAGCTTAAAAAGTCTCTGCC 515 Query 838 TTTATCGAGTTCTTTGG-TGATATCTTTCCTTGCTTGTCACCAAGCGGGAGCGCCTGTTC 896 ||||||| |||||||| | |||||||||||||||||||| |||| ||| | Sbjct 516 TTTATCGTCTTCTTTGGCT-CTATCTTTCCTTGCTTGTCACAAAGCTGGA--------AC 566 Query 897 TACCCACGGATATTGTGAGATGGGCACGAGAAGGAAAGCTTCCGTAT-TTGTCTTGTTTT 955 |||||||||||| || |||||||||||| |||||||| |||||||| || |||| |||| Sbjct 567 -ACCCACGGATATAGTTAGATGGGCACGACAAGGAAAGTTTCCGTATCTT-TCTTCTTTT 624 Query 956 CTCGATATTAGAGAGCAAATGGGAGAGC-GATCAGCTGCGTGTCCGGTGAAAGTAAGTAT 1014 ||| | ||| |||||||||||||||| | |||||||||||||||| ||| ||||| | Sbjct 625 CTCAAGATTCGAGAGCAAATGGGAGA-CAGATCAGCTGCGTGTCCTGTGTCTGTAAGCGT 683 Query 1015 AATGGCT-AGGCCTTTTCAGGTTATTTCTGCTCAGATG-TTGGAAGCACGAGCCT-CTGT 1071 || | | | |||| |||| || |||||||||||| | || ||||| | || | || | Sbjct 684 GAT-GTTCAAGCCTAGTCAGATTGTTTCTGCTCAGA-GATTAGAAGCTCAAG-TTGCT-T 739 Query 1072 -GATTGCTGATACT-ATTGGTTTGCCTTTGCCTCCTGTGAATTTCTATGGTATAGCTTCA 1129 |||||||||| | || |||||||||||||||||||||||||||||||||||||| ||| Sbjct 740 CCATTGCTGATA-TCATCGGTTTGCCTTTGCCTCCTGTGAATTTCTATGGTATAGCGTCA 798 Query 1130 AACTATATAAAGCAGTTATCTATTCCTGAGGACAAGATTCTTGATCTGG-CGCGTCT-TA 1187 |||||| || ||| ||| |||||||| |||| ||| |||||||||||| | ||||| | Sbjct 799 AACTATCTAGAGCGGTTGTCTATTCCCAAGGAGAAGGTTCTTGATCTGGTC-CGTCTCT- 856 Query 1188 TACAGAACTGGTCATTGCCT-CCTGAGTTATATTTATCGACGAATGAGCAGAAGCTTCCT 1246 |||| ||||||||| || || || || || ||| |||| | ||| | || | |||||| Sbjct 857 TACACAACTGGTCAATGTCTTCC-GATTTGTATCTATCAAAGAACGTGCTCAGGCTTCCC 915 Query 1247 AGC-CGTGTGTGTGTCATGTCTATTCTGATTGTAGCTATTCGGATGCTTTATAACATAAA 1305 | | ||||| | ||||||||||||| | || ||||||||||||||||||||||| || || Sbjct 916 A-CTCGTGTCTATGTCATGTCTATTATTATCGTAGCTATTCGGATGCTTTATAATATCAA 974 Query 1306 TGGTTTGGGTGTGTGGGAACGGAGTTTGGGGTTTG-TCAATGCTAGTGA 1353 |||||| ||||| ||||||| || ||||| |||| | |||||||||| Sbjct 975 TGGTTTTGGTGTATGGGAACAAAGCTTGGG-TTTGCTTGATGCTAGTGA 1022 Score = 381 bits (206), Expect = 1e-104 Identities = 280/316 (89%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 1763 CACC-GAGAATCATCATCAC-CAGAGAAATTAAAAGAGATAGCGATAAAAAGACTAATTA 1820 |||| || |||||| ||||| |||||||| || |||| |||||||| ||||||||| | Sbjct 1328 CACCAGATAATCATAATCACGAAGAGAAATCCAAGGAGAAAGCGATAAGAAGACTAATAA 1387 Query 1821 CAGACATG-GGAGATGACTTGTTCTGTTACATACCACCTCGTGTGAAGGTAAAGAGACTA 1879 |||||||| || || | |||||| |||||||| |||||||||||||||||||||||| Sbjct 1388 CAGACATGAGG-GACAATTTGTTCCAATACATACCGCCTCGTGTGAAGGTAAAGAGACTA 1446 Query 1880 GACTATCTTCAGTACGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCATGCA 1939 ||||||||||| || ||||||||||| || |||||||||||||||||||||| |||||| Sbjct 1447 GACTATCTTCAATATGTGAGGAAAAATGATGATGGAGCATTGATATACGCGGGTCATGCG 1506 Query 1940 GATTACTACATTCTTTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATG 1999 ||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||| Sbjct 1507 GATTACTACATTCTTTTACGGGTTTGTGCTATGGTCGCTGAGATTGATGCAAGGAATATG 1566 Query 2000 CATAGAGGTGTGTTGAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAG 2059 |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| Sbjct 1567 CATAGAAGTGTGTTGAGCTTTGAGAGAAGATTGGCTTGGATCGAGAAAAAGATAGATCAT 1626 Query 2060 GTTTTGCATCTAACTC 2075 |||||||||||||||| Sbjct 1627 GTTTTGCATCTAACTC 1642 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92102212410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5