BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03110.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896277 jgi|Araly1|896277|Al_scaffold_0005_243 839 0.0
Ahg471578 jgi|Araly1|471578|fgenesh2_kg.1__1532__AT1G14170.3 357 9e-98
> Ahg896277 jgi|Araly1|896277|Al_scaffold_0005_243
Length=1410
Score = 839 bits (454), Expect = 0.0
Identities = 593/658 (90%), Gaps = 17/658 (3%)
Strand=Plus/Plus
Query 1 CTGTGTATCGTTACTTGTGTCTTGTGA-GAAGAGCAGGGAG--TTCTTGGGAGAGGTGGT 57
|||||||||||||| |||||| ||||| ||| ||||||||| || ||||||||||||||
Sbjct 53 CTGTGTATCGTTACCTGTGTCCTGTGAGGAA-AGCAGGGAGTATTATTGGGAGAGGTGGT 111
Query 58 GAGATTGCAAAATAGATTAGGTCTGAGACTAAAGCAAACATGAGGGTAAACGAGGCATTG 117
|| |||||||| |||||||||||||||| ||||||||||||||| | |||||||| ||
Sbjct 112 GAAATTGCAAAGCAGATTAGGTCTGAGACGAAAGCAAACATGAGGATTAACGAGGCTTTA 171
Query 118 CCTGGTTGTGATGAGCGTGTTGTGACTATATATTCTAATAGCGAGGAGA-GAAATCGTAT 176
|| |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 172 CCGGGTTGTGATGAGCGTGTTGTTACTATATATTCTAATAGCGAGGAGACG-AATCGTAT 230
Query 177 TGAAGATGACAATGAGGATTTTGTCTGTCCTGCTTTTGATGCTCTTTTCAAGGTTCATGA 236
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 231 TGAAGATG---ATGAGGATTTTGTTTGTCCTGCTTTTGATGCTCTTTTCAAGGTTCATGA 287
Query 237 TATGGTTGTTGTTGAAGAATTTGACGATGATGATGATTATAATGACAATGATGAGTATAG 296
|||| |||||| ||||||||||||| |||||| ||||||| || || |||||||||||||
Sbjct 288 TATGATTGTTGCTGAAGAATTTGACAATGATGGTGATTATGATAACGATGATGAGTATAG 347
Query 297 TGAGGGACAAACAGTTGTTACTGTGAGGATGCTTGTGCCTTCTGATCAAATTGGTTATCT 356
|| | |||||||| |||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 348 TGCGAGACAAACA---GTTACTGTGAGGATGCTTGTTCCTTCGGATCAAATTGGTTGCCT 404
Query 357 TATTGGCAAAGGTGGACCAA-TTATTCAAACGCTGCGTAATGACACTAATGCTCAGATTC 415
|||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 405 TATTGGGAAAGGTGGA-CAAGTTATTCAAAAACTGCGTAATGACACTAATGCTCAGATTC 463
Query 416 GTGTTAGAAATGATAATCTACCCATGTGTGCTTTGGCATTGAGTCATGATGAGCTTCTTC 475
|||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 464 GTGTTATAAATGATAATCTTCCCATTTGTGCTTTGGCTTTGAGTCATGATGAGCTTCTTC 523
Query 476 AGATAATTGGAGATCCTTCTGCTGTTAGAGAAGCTCTTTACCAAGTTGCCTTTCTGCTTT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGATAATTGGAGATCCTTCTGCTGTTAGAGAAGCTCTTTACCAAGTTGCCTTTCTGCTTT 583
Query 536 ATAATAATCCGTCACGATTTTAGAACTACTTTCTGTCTTCCTCTAGTAGTACACTGCAAC 595
|| ||||||||||||| ||| ||||||||||||||||||| ||||||| | ||||| |
Sbjct 584 ATGATAATCCGTCACGCTTTCAGAACTACTTTCTGTCTTCTTCTAGTAC--C-CTGCAGC 640
Query 596 ATCAACCTGGTAGAATTCTGATGAATCCTGCAGTAACGACCTCTCATAAAAATTGCTC 653
||||||||||| ||||||| |||| ||||||| |||||| ||||| ||||||| |||
Sbjct 641 ATCAACCTGGTGGAATTCTAATGAGTCCTGCAATAACGAGTTCTCACAAAAATTACTC 698
Score = 453 bits (245), Expect = 1e-126
Identities = 277/292 (95%), Gaps = 3/292 (1%)
Strand=Plus/Plus
Query 646 AATTGCTCGTGAGAATGAGGAGATGGTCCAAATAACAGGAAGTCTTGATGCAGCAATCAA 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 AATTGCTCGTGAGAATGAGGAGATGGTCCAAATAACAGGAAGTCTTGATGCAGCAATCAA 1178
Query 706 AGCTCTTACACAAGTGATGCTGCGTTTAAGAGCCAATGTATTTGACATGGATCGTGGTCT 765
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1179 AGCTCTTACGCAAGTGATGCTGCGATTAAGAGCCAATGTATTTGACATGGATCGTGGTCT 1238
Query 766 TGTCTTGCTTCCAACTTTATTTCCTTATATTTCTCAAACAATATAGACTTCGAGCAAGTC 825
|||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |
Sbjct 1239 TGTCTTGCTTCCAACTTTCTTTCCTTATATTTCTCAAACAATAGAGACTTCAAGCAAGCC 1298
Query 826 TAGGCACAGAAAAGGCGAGAACCATCCTCATGGTTCAGAGGAATTTGCTAGGAATGAAGA 885
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1299 TAGGCACAGAAAAGGCGAGAACCATCCTCATGGTTCCGAGGAAATTGCTAGGAATGAAGA 1358
Query 886 CTATGGT---CAAATGAACGTAAATTCCCCAATAAGAAACCGAGTTTATTGA 934
||||||| |||| |||| |||| ||||||| |||||||||||||||||||
Sbjct 1359 CTATGGTAGTCAAACGAACTTAAAGTCCCCAAGAAGAAACCGAGTTTATTGA 1410
> Ahg471578 jgi|Araly1|471578|fgenesh2_kg.1__1532__AT1G14170.3
Length=1706
Score = 357 bits (193), Expect = 9e-98
Identities = 471/599 (79%), Gaps = 44/599 (7%)
Strand=Plus/Plus
Query 1 CTGTGTATCGTTACTTGTGTCTTGTG-AGAAGAGCAGGGAG--TTCTTGGG-AGAGGTGG 56
||||||| || |||||||| | ||| | |||| | ||||| || | ||| || |||||
Sbjct 313 CTGTGTACCGCTACTTGTGCCCCGTGAAAAAGA-CCGGGAGCATTATCGGGAAG-GGTGG 370
Query 57 TGAGATTGCAAAATAGATTAGGTCTGAGACTAAAGCAAACATGAGGGTAAACGAGGCATT 116
||||| || || |||| |||||||| || ||| ||||||||||| |||||||||| ||
Sbjct 371 CGAGATCGCTAAGCAGATAAGGTCTGATACAAAATCAAACATGAGGATAAACGAGGCTTT 430
Query 117 GCCTGGTTGTGATGAGCGTGTTGTGACTATATATTCTAATAGCGAGGAG-AGAAATCGTA 175
|| |||||||| ||||||||||| || |||||||| | || |||||| | |||| |
Sbjct 431 ACCCGGTTGTGAAGAGCGTGTTGTTACCATATATTCCACTAATGAGGAGTTG-AATCATT 489
Query 176 TTGAAGATGACAATGAG-GATTTTGTCTGTCCTGCTTTTGATGCTCTTTTCAAGGTTCAT 234
||| ||||| ||| | || |||| ||||||||||| |||||||||||||||||||||
Sbjct 490 TTGGAGATG---ATG-GTGAGCTTGTTTGTCCTGCTTTAGATGCTCTTTTCAAGGTTCAT 545
Query 235 GATATGGTTGTTGTTGAAGAATTTGAC-GATGATGATGATTATAATGACAATGATGAGT- 292
|| |||||||| | | | | || ||| |||||||| |||||| ||||||| |
Sbjct 546 GACATGGTTGTAG-CG--G-A---CACTGATCATGATGATGGTAATGATGATGATGA-TC 597
Query 293 ATAGTGAGGGACAAACAGTTGTTACTGTGAGGATGCTTGTGCCTTCTGATCAAATTGGTT 352
| |||| |||||| | |||||||| |||||||| || || ||||| ||||||||||
Sbjct 598 TTGGTGAAAAACAAAC-G--GTTACTGTTAGGATGCTCGTACCGTCTGACCAAATTGGTT 654
Query 353 ATC-TTATTGGCAAAGGTGGACCAA-TTATTCA-AACGCTGCGTAATGACACTAATGCTC 409
| |||| || ||||| || ||| | || || || ||||||||||| || |||||||
Sbjct 655 -GCGTTATCGGGAAAGGAGG-GCAAGTCATCCAGAA-TCTGCGTAATGAAACCAATGCTC 711
Query 410 AGATTCGTGTTA-GAAATGATAATCTACCCAT-GTGTGCTTTGGCATTGAGTCATGATGA 467
|||||||||| | ||| ||| ||||| || | ||||||||| | ||||||||||||||
Sbjct 712 AGATTCGTGTCATCAAA-GATCATCTA-CCTTCTTGTGCTTTGACTTTGAGTCATGATGA 769
Query 468 GCTTCTTCAGATAATTGGAGATCCTTCTGCT-GTTAGAGAAGCTCTTTACCAAGTTGCCT 526
||||||||||||||||||||| |||| || | ||||||||||||||||| ||||| || |
Sbjct 770 GCTTCTTCAGATAATTGGAGAACCTT-TGGTTGTTAGAGAAGCTCTTTATCAAGTAGC-T 827
Query 527 TTC-TGCTTTATAATAATCCGTCACGATTTTAGA-ACT-ACTTTCTGTCTTCCTCTAGT 582
| | ||||| || ||||||||||||||||| | | ||| ||| |||||||| || |||
Sbjct 828 TCCCTGCTTCATGATAATCCGTCACGATTTCA-ACACTTACTC-CTGTCTTCTTCAAGT 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5